Wall clock time and date at job start Tue Mar 31 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 110.05842 * 2 1 4 4 C 1.54266 * 110.02945 * 238.58626 * 2 1 3 5 5 C 1.54898 * 104.19500 * 217.10653 * 4 2 1 6 6 C 1.54889 * 102.74464 * 37.94145 * 5 4 2 7 7 C 1.53876 * 110.03250 * 121.41895 * 2 1 3 8 8 H 1.08995 * 110.07277 * 238.59430 * 7 2 1 9 9 N 1.46498 * 110.03151 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00268 * 203.62320 * 9 7 2 11 11 O 1.21353 * 119.99414 * 359.97438 * 10 9 7 12 12 C 1.49448 * 120.00712 * 179.97438 * 10 9 7 13 13 O 1.21353 * 119.99400 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00494 * 179.97438 * 12 10 9 15 15 C 1.46493 * 120.00393 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47400 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 H 1.08995 * 109.46781 * 298.58333 * 1 2 3 26 26 H 1.09003 * 109.46818 * 58.57870 * 1 2 3 27 27 H 1.08994 * 109.46894 * 178.58248 * 1 2 3 28 28 H 1.08993 * 109.47241 * 181.41804 * 3 2 1 29 29 H 1.08997 * 109.47045 * 301.41952 * 3 2 1 30 30 H 1.09004 * 109.46620 * 61.41352 * 3 2 1 31 31 H 1.08999 * 110.48794 * 98.42989 * 4 2 1 32 32 H 1.09005 * 110.48589 * 335.77885 * 4 2 1 33 33 H 1.08996 * 110.75276 * 279.63177 * 5 4 2 34 34 H 1.08997 * 110.75489 * 156.25191 * 5 4 2 35 35 H 1.09009 * 110.48528 * 203.37765 * 6 5 4 36 36 H 1.09004 * 110.49075 * 80.74149 * 6 5 4 37 37 H 0.97000 * 120.00382 * 23.61649 * 9 7 2 38 38 H 0.97000 * 119.99567 * 359.97438 * 14 12 10 39 39 H 1.09004 * 109.46794 * 59.99777 * 15 14 12 40 40 H 1.09000 * 109.47559 * 300.00254 * 15 14 12 41 41 H 1.09004 * 109.47066 * 60.00265 * 16 15 14 42 42 H 1.08994 * 109.47405 * 300.00096 * 16 15 14 43 43 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 3.3137 -1.5008 -0.7192 6 6 2.8874 -1.9407 0.7034 7 6 2.0572 -0.7536 1.2337 8 1 2.6865 -0.0959 1.8332 9 7 0.9360 -1.2457 2.0380 10 6 1.1083 -1.4994 3.3505 11 8 2.1924 -1.3207 3.8657 12 6 -0.0355 -2.0009 4.1712 13 8 -1.1197 -2.1791 3.6560 14 7 0.1369 -2.2551 5.4834 15 6 -0.9844 -2.7461 6.2881 16 6 -0.5240 -2.9527 7.7324 17 6 -1.6774 -3.4584 8.5600 18 1 -2.6424 -3.6170 8.1015 19 6 -1.4993 -3.7245 9.9011 20 7 -2.5045 -4.1710 10.6221 21 14 0.1698 -3.4508 10.6939 22 1 0.2493 -2.0619 11.2134 23 1 0.3489 -4.4092 11.8140 24 1 1.2382 -3.6637 9.6846 25 1 -0.3633 0.4917 0.9024 26 1 -0.3633 0.5358 -0.8770 27 1 -0.3633 -1.0273 -0.0254 28 1 3.1444 1.4262 -0.0254 29 1 1.6762 1.9622 -0.8770 30 1 1.7175 1.9471 0.9024 31 1 2.3297 -0.0536 -2.0255 32 1 1.3142 -1.4660 -1.5967 33 1 4.1710 -0.8291 -0.6752 34 1 3.5324 -2.3679 -1.3423 35 1 3.7638 -2.1039 1.3309 36 1 2.2771 -2.8427 0.6571 37 1 0.0695 -1.3888 1.6262 38 1 1.0037 -2.1130 5.8951 39 1 -1.3367 -3.6936 5.8803 40 1 -1.7946 -2.0172 6.2654 41 1 -0.1714 -2.0053 8.1404 42 1 0.2859 -3.6818 7.7548 43 1 -2.3792 -4.3578 11.5656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259886069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:49 Heat of formation + Delta-G solvation = -112.450581 kcal Electronic energy + Delta-G solvation = -22241.079213 eV Core-core repulsion = 18898.535780 eV Total energy + Delta-G solvation = -3342.543433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.95178 -40.50333 -39.12942 -36.92092 -35.11204 -34.62163 -33.20882 -32.13890 -29.22176 -28.36013 -27.40769 -25.71678 -24.45727 -22.68547 -21.90503 -21.25228 -20.29832 -19.09749 -19.03058 -17.95056 -17.11617 -16.92512 -16.47417 -16.24137 -15.94007 -15.91580 -15.43404 -15.11136 -14.64021 -14.56457 -14.42451 -13.98966 -13.72860 -13.41280 -13.25135 -13.08768 -13.00898 -12.78400 -12.46785 -12.23926 -12.20584 -12.01220 -11.87195 -11.79274 -11.60102 -11.52404 -11.45168 -11.37771 -10.80105 -10.71855 -10.30774 -10.21651 -8.31351 -6.38214 0.30019 1.31054 1.38933 1.40467 1.51729 2.09775 2.35475 2.64482 3.03880 3.35761 3.46103 3.59549 3.82338 4.24722 4.27349 4.32753 4.33547 4.36923 4.37097 4.46286 4.70629 4.70979 4.77700 4.81239 4.92765 4.96007 4.97087 5.02219 5.11602 5.18257 5.24453 5.27379 5.32351 5.35460 5.36174 5.40407 5.49811 5.57601 5.92177 6.19440 6.33987 6.66832 6.73218 6.91221 7.26468 8.84994 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036827 B = 0.002950 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.131800 B = 9488.001163 C = 9796.747426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.137 4.137 7 C 0.140 3.860 8 H 0.084 0.916 9 N -0.684 5.684 10 C 0.512 3.488 11 O -0.540 6.540 12 C 0.499 3.501 13 O -0.550 6.550 14 N -0.687 5.687 15 C 0.142 3.858 16 C -0.017 4.017 17 C -0.537 4.537 18 H 0.036 0.964 19 C 0.008 3.992 20 N -0.948 5.948 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.241 1.241 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.418 0.582 38 H 0.417 0.583 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.034 0.966 42 H 0.035 0.965 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.667 9.868 -26.405 31.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.072 4.072 3 C -0.195 4.195 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.176 4.176 7 C 0.036 3.964 8 H 0.102 0.898 9 N -0.340 5.340 10 C 0.292 3.708 11 O -0.418 6.418 12 C 0.280 3.720 13 O -0.428 6.428 14 N -0.339 5.339 15 C 0.019 3.981 16 C -0.055 4.055 17 C -0.575 4.575 18 H 0.054 0.946 19 C -0.190 4.190 20 N -0.588 5.588 21 Si 0.776 3.224 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.165 1.165 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.260 0.740 38 H 0.254 0.746 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.591 9.816 -26.236 31.135 hybrid contribution -0.030 -0.247 1.113 1.140 sum 13.561 9.569 -25.123 30.111 Atomic orbital electron populations 1.21957 0.94020 1.02085 1.02843 1.21428 0.96087 0.96177 0.93532 1.21899 1.01490 0.93783 1.02306 1.22501 0.97171 0.99049 0.96072 1.22447 0.98176 1.00675 0.94176 1.22800 0.99459 0.97448 0.97896 1.22069 0.86679 0.95931 0.91721 0.89812 1.46266 1.16338 1.64000 1.07358 1.19999 0.87730 0.78995 0.84044 1.90737 1.26691 1.52017 1.72336 1.20400 0.88704 0.79392 0.83541 1.90730 1.27288 1.52778 1.72025 1.45981 1.15942 1.63669 1.08331 1.21286 0.87611 0.98497 0.90724 1.19689 0.96712 0.97673 0.91381 1.21203 0.97017 1.44633 0.94647 0.94559 1.25992 1.01254 0.93907 0.97799 1.70055 1.33907 1.46559 1.08231 0.85623 0.79748 0.78566 0.78498 1.19052 1.21102 1.16470 0.93037 0.90219 0.92141 0.91713 0.90737 0.93453 0.89547 0.90845 0.90473 0.90226 0.91893 0.91559 0.74045 0.74589 0.92255 0.92212 0.94753 0.94652 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 7.04 71.98 0.51 -1.39 16 2 C -0.07 -0.88 0.94 -51.45 -0.05 -0.93 16 3 C -0.14 -1.49 8.15 71.98 0.59 -0.90 16 4 C -0.11 -1.02 5.90 31.67 0.19 -0.84 16 5 C -0.12 -1.23 6.91 31.89 0.22 -1.01 16 6 C -0.14 -2.22 6.52 31.67 0.21 -2.01 16 7 C 0.14 2.47 2.86 45.72 0.13 2.60 16 8 H 0.08 1.72 7.14 -2.39 -0.02 1.70 16 9 N -0.68 -14.96 4.50 -440.44 -1.98 -16.94 16 10 C 0.51 14.51 7.88 87.27 0.69 15.20 16 11 O -0.54 -17.07 16.16 -3.26 -0.05 -17.12 16 12 C 0.50 16.38 7.89 87.27 0.69 17.07 16 13 O -0.55 -20.20 16.48 -3.26 -0.05 -20.25 16 14 N -0.69 -23.28 5.55 -464.43 -2.58 -25.86 16 15 C 0.14 5.69 5.61 86.38 0.48 6.17 16 16 C -0.02 -0.75 4.15 29.85 0.12 -0.63 16 17 C -0.54 -30.38 9.66 25.60 0.25 -30.13 16 18 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 19 C 0.01 0.46 5.47 84.66 0.46 0.92 16 20 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 21 Si 0.95 42.96 27.47 68.60 1.88 44.85 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 25 H 0.05 0.78 7.71 -2.39 -0.02 0.76 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.76 6.92 -2.39 -0.02 0.74 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.58 7.84 -2.39 -0.02 0.56 16 32 H 0.07 0.67 7.84 -2.38 -0.02 0.65 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.07 1.15 8.05 -2.38 -0.02 1.14 16 37 H 0.42 8.50 5.24 -92.71 -0.49 8.01 16 38 H 0.42 12.83 7.94 -92.71 -0.74 12.09 16 39 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 40 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.03 1.46 7.58 -2.38 -0.02 1.44 16 42 H 0.04 1.52 7.19 -2.39 -0.02 1.51 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -67.94 346.86 1.73 -66.21 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.27 Total: 23.52 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 4.48 Total: 4.13 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -4.26 Total: -101.33 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.11 Total: -37.37 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.85 kcal Total: -67.94 1.73 -66.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259886069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.243 kcal (2) G-P(sol) polarization free energy of solvation -67.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds