Wall clock time and date at job start Tue Mar 31 2020 05:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00240 * 2 1 4 4 C 1.53001 * 109.47122 * 263.08089 * 3 2 1 5 5 H 1.08990 * 112.96520 * 312.33978 * 4 3 2 6 6 C 1.53947 * 113.76669 * 180.65628 * 4 3 2 7 7 C 1.53943 * 86.29265 * 222.09146 * 6 4 3 8 8 N 1.47584 * 86.11608 * 23.60943 * 7 6 4 9 9 C 1.36940 * 134.49539 * 155.35510 * 8 7 6 10 10 H 1.07992 * 119.99977 * 153.52190 * 9 8 7 11 11 C 1.38813 * 119.99626 * 333.52635 * 9 8 7 12 12 N 1.31617 * 120.00016 * 167.56048 * 11 9 8 13 13 Si 1.86798 * 120.00126 * 347.55024 * 11 9 8 14 14 H 1.48504 * 109.47025 * 83.94814 * 13 11 9 15 15 H 1.48503 * 109.47222 * 203.94460 * 13 11 9 16 16 H 1.48490 * 109.47537 * 323.94799 * 13 11 9 17 17 C 1.34777 * 120.00135 * 179.97438 * 2 1 3 18 18 O 1.21286 * 119.99875 * 175.21734 * 17 2 1 19 19 C 1.50698 * 120.00137 * 354.94058 * 17 2 1 20 20 C 1.53002 * 110.45677 * 59.52265 * 19 17 2 21 21 C 1.54508 * 110.51139 * 182.12998 * 19 17 2 22 22 C 1.54479 * 104.06159 * 118.64749 * 21 19 17 23 23 O 1.44432 * 104.80509 * 23.97557 * 22 21 19 24 24 C 1.44639 * 105.36668 * 319.56610 * 23 22 21 25 25 H 1.09001 * 109.47404 * 212.37742 * 1 2 3 26 26 H 1.08996 * 109.47601 * 332.38250 * 1 2 3 27 27 H 1.09004 * 109.47005 * 92.38212 * 1 2 3 28 28 H 1.09009 * 109.46882 * 23.08000 * 3 2 1 29 29 H 1.08991 * 109.47626 * 143.07772 * 3 2 1 30 30 H 1.08996 * 113.74781 * 336.44260 * 6 4 3 31 31 H 1.09004 * 113.73554 * 107.74973 * 6 4 3 32 32 H 1.08997 * 113.76922 * 137.90978 * 7 6 4 33 33 H 1.09000 * 113.77280 * 269.20157 * 7 6 4 34 34 H 0.96995 * 120.00358 * 180.02562 * 12 11 9 35 35 H 1.09003 * 109.46712 * 57.82108 * 20 19 17 36 36 H 1.08998 * 109.47124 * 177.81992 * 20 19 17 37 37 H 1.08994 * 109.47065 * 297.82614 * 20 19 17 38 38 H 1.08996 * 110.51001 * 237.28725 * 21 19 17 39 39 H 1.08999 * 110.51125 * 0.02562 * 21 19 17 40 40 H 1.08994 * 110.37501 * 142.81043 * 22 21 19 41 41 H 1.09004 * 110.37382 * 265.03616 * 22 21 19 42 42 H 1.08995 * 110.34257 * 281.59061 * 24 23 22 43 43 H 1.08997 * 110.50615 * 159.18140 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.6030 1.6235 -1.4320 5 1 3.0583 0.7885 -1.9643 6 6 3.3965 2.9379 -1.5446 7 6 2.5366 3.2341 -2.7865 8 7 1.5456 2.3136 -2.1960 9 6 0.1896 2.1610 -2.3108 10 1 -0.2620 1.1959 -2.1349 11 6 -0.6044 3.2468 -2.6534 12 7 -1.8596 3.0601 -3.0027 13 14 0.1083 4.9731 -2.6186 14 1 0.8175 5.2417 -3.8954 15 1 -0.9891 5.9584 -2.4451 16 1 1.0633 5.0917 -1.4877 17 6 2.1389 -1.1672 0.0005 18 8 3.3486 -1.1690 -0.0871 19 6 1.3898 -2.4697 0.1162 20 6 0.4012 -2.6227 -1.0415 21 6 2.3748 -3.6597 0.1479 22 6 2.1197 -4.3217 1.5201 23 8 0.7723 -3.9371 1.8706 24 6 0.6531 -2.5519 1.4715 25 1 -0.3634 -0.8679 0.5503 26 1 -0.3634 0.9105 0.4764 27 1 -0.3633 -0.0427 -1.0268 28 1 1.5604 2.0561 0.4029 29 1 3.0906 1.1727 0.6173 30 1 3.2247 3.6266 -0.7173 31 1 4.4539 2.7944 -1.7671 32 1 2.1946 4.2672 -2.8479 33 1 2.9722 2.8743 -3.7186 34 1 -2.4144 3.8187 -3.2425 35 1 0.9392 -2.5697 -1.9880 36 1 -0.1032 -3.5858 -0.9637 37 1 -0.3364 -1.8215 -0.9976 38 1 2.1560 -4.3582 -0.6597 39 1 3.4036 -3.3059 0.0803 40 1 2.1956 -5.4059 1.4383 41 1 2.8275 -3.9472 2.2596 42 1 1.1334 -1.9038 2.2045 43 1 -0.3950 -2.2782 1.3508 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316609783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:47 Heat of formation + Delta-G solvation = -2.592988 kcal Electronic energy + Delta-G solvation = -24017.815531 eV Core-core repulsion = 20680.035881 eV Total energy + Delta-G solvation = -3337.779650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78825 -38.77486 -37.82844 -35.25060 -33.53565 -32.33208 -30.12468 -28.79167 -27.91213 -26.79588 -26.19996 -23.57721 -23.11435 -22.80799 -21.24005 -19.24242 -18.56586 -17.20284 -16.99119 -16.38754 -15.82887 -15.57744 -15.23846 -14.93472 -14.68309 -14.11468 -14.08038 -13.55151 -13.23899 -13.00276 -12.82039 -12.47730 -12.43712 -12.20491 -11.89722 -11.80761 -11.43922 -11.31007 -11.24297 -11.10608 -10.93714 -10.83851 -10.71323 -10.42589 -10.28920 -9.85637 -9.74589 -9.42276 -9.36281 -8.67600 -8.23535 -7.00564 -5.98317 -3.35671 2.81782 3.25931 3.32084 3.42295 3.46183 3.87195 4.32257 4.50819 4.63947 4.66556 4.71702 4.92015 5.08729 5.14222 5.26019 5.32653 5.36075 5.52134 5.59477 5.64718 5.69799 5.73385 5.78634 5.84163 5.89095 5.95333 5.96876 6.05936 6.07250 6.18276 6.21063 6.34464 6.36902 6.43819 6.45082 6.63500 6.82784 7.09272 7.37043 7.73570 8.31313 8.41435 8.66781 9.61320 10.35657 11.18039 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026527 B = 0.005231 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.269206 B = 5351.219415 C = 5960.313588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.594 5.594 3 C 0.121 3.879 4 C 0.135 3.865 5 H 0.058 0.942 6 C -0.148 4.148 7 C 0.098 3.902 8 N -0.618 5.618 9 C -0.231 4.231 10 H 0.094 0.906 11 C 0.025 3.975 12 N -0.916 5.916 13 Si 0.894 3.106 14 H -0.288 1.288 15 H -0.304 1.304 16 H -0.273 1.273 17 C 0.524 3.476 18 O -0.546 6.546 19 C -0.112 4.112 20 C -0.150 4.150 21 C -0.142 4.142 22 C 0.045 3.955 23 O -0.373 6.373 24 C 0.059 3.941 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.424 -9.799 8.330 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.324 5.324 3 C -0.002 4.002 4 C 0.028 3.972 5 H 0.075 0.925 6 C -0.187 4.187 7 C -0.027 4.027 8 N -0.346 5.346 9 C -0.358 4.358 10 H 0.112 0.888 11 C -0.174 4.174 12 N -0.560 5.560 13 Si 0.726 3.274 14 H -0.216 1.216 15 H -0.232 1.232 16 H -0.199 1.199 17 C 0.311 3.689 18 O -0.424 6.424 19 C -0.116 4.116 20 C -0.207 4.207 21 C -0.180 4.180 22 C -0.031 4.031 23 O -0.292 6.292 24 C -0.018 4.018 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.471 -9.857 8.326 14.435 hybrid contribution 0.341 1.266 -0.451 1.386 sum 6.812 -8.591 7.875 13.499 Atomic orbital electron populations 1.22425 0.78918 1.02384 1.03595 1.47665 1.07478 1.05651 1.71632 1.21854 0.96284 0.84165 0.97916 1.22656 0.88773 0.94286 0.91500 0.92477 1.23602 0.97578 0.98209 0.99303 1.22805 0.89779 0.95332 0.94742 1.46283 1.01546 1.38476 1.48331 1.18742 0.78085 0.95693 1.43274 0.88845 1.25052 0.94879 0.97703 0.99755 1.69741 1.06863 1.30826 1.48566 0.86700 0.76990 0.85489 0.78258 1.21574 1.23221 1.19882 1.20153 0.87563 0.84905 0.76283 1.90626 1.14138 1.86996 1.50669 1.22081 0.97142 0.94021 0.98351 1.22144 0.98630 1.03560 0.96355 1.23018 1.01363 0.95519 0.98098 1.23436 0.84250 1.00342 0.95110 1.89145 1.30512 1.26114 1.83415 1.23622 1.01365 0.84047 0.92736 0.91848 0.90440 0.90178 0.89570 0.90965 0.90311 0.92176 0.93796 0.94063 0.92704 0.91796 0.91341 0.90032 0.90178 0.88180 0.89022 0.92242 0.91935 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 7.81 59.84 0.47 1.52 16 2 N -0.59 -9.79 2.89 -181.57 -0.52 -10.32 16 3 C 0.12 2.11 5.22 -4.04 -0.02 2.09 16 4 C 0.14 2.64 4.47 -66.86 -0.30 2.34 16 5 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 6 C -0.15 -2.64 7.86 -25.81 -0.20 -2.84 16 7 C 0.10 2.07 7.56 -2.97 -0.02 2.05 16 8 N -0.62 -14.34 3.20 -170.75 -0.55 -14.89 16 9 C -0.23 -6.08 10.39 -15.06 -0.16 -6.23 16 10 H 0.09 2.52 5.16 -52.49 -0.27 2.25 16 11 C 0.02 0.69 5.50 -17.43 -0.10 0.59 16 12 N -0.92 -26.97 13.97 55.49 0.78 -26.20 16 13 Si 0.89 22.23 24.73 -169.99 -4.20 18.03 16 14 H -0.29 -7.16 6.97 56.52 0.39 -6.77 16 15 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 16 H -0.27 -6.55 6.88 56.52 0.39 -6.16 16 17 C 0.52 8.55 6.33 -10.99 -0.07 8.48 16 18 O -0.55 -10.31 15.02 5.55 0.08 -10.22 16 19 C -0.11 -1.49 0.69 -154.09 -0.11 -1.60 16 20 C -0.15 -1.91 7.93 37.16 0.29 -1.62 16 21 C -0.14 -1.72 6.32 -25.16 -0.16 -1.87 16 22 C 0.05 0.49 7.64 37.93 0.29 0.78 16 23 O -0.37 -4.76 11.65 -35.23 -0.41 -5.17 16 24 C 0.06 0.71 5.57 37.94 0.21 0.93 16 25 H 0.06 0.78 3.41 -51.93 -0.18 0.60 16 26 H 0.08 1.22 7.82 -51.93 -0.41 0.82 16 27 H 0.08 1.43 4.76 -51.93 -0.25 1.18 16 28 H 0.09 1.53 7.80 -51.92 -0.40 1.13 16 29 H 0.07 1.18 7.71 -51.93 -0.40 0.78 16 30 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.98 3.71 -51.93 -0.19 0.79 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.07 4.39 -51.93 -0.23 0.84 16 38 H 0.08 0.87 7.73 -51.93 -0.40 0.47 16 39 H 0.10 1.35 6.50 -51.93 -0.34 1.01 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.76 7.86 -51.93 -0.41 0.35 16 43 H 0.10 1.12 6.14 -51.93 -0.32 0.81 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -31.16 322.07 -6.17 -37.33 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.33 Total: 1.95 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 0.13 Total: 4.63 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.30 Total: -51.40 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.33 Total: -15.39 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.20 Total: 18.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.16 -6.17 -37.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316609783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.741 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds