Wall clock time and date at job start Tue Mar 31 2020 06:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.53002 * 109.47327 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46910 * 305.00185 * 4 3 2 6 6 C 1.52994 * 109.47140 * 184.99712 * 4 3 2 7 7 N 1.46501 * 109.46921 * 64.99520 * 4 3 2 8 8 C 1.34778 * 120.00189 * 204.99830 * 7 4 3 9 9 O 1.21345 * 119.99684 * 0.02562 * 8 7 4 10 10 C 1.49449 * 120.00001 * 180.02562 * 8 7 4 11 11 O 1.21347 * 120.00228 * 5.09493 * 10 8 7 12 12 N 1.34774 * 120.00048 * 185.09256 * 10 8 7 13 13 C 1.46502 * 120.00331 * 185.04195 * 12 10 8 14 14 C 1.52996 * 109.47063 * 184.77839 * 13 12 10 15 15 C 1.50698 * 115.55121 * 294.81386 * 14 13 12 16 16 H 1.08003 * 119.99766 * 95.20398 * 15 14 13 17 17 C 1.37874 * 119.99926 * 274.92660 * 15 14 13 18 18 N 1.31507 * 120.00401 * 355.41780 * 17 15 14 19 19 Si 1.86807 * 119.99884 * 175.41717 * 17 15 14 20 20 H 1.48500 * 109.47157 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47138 * 120.00273 * 19 17 15 22 22 H 1.48505 * 109.47155 * 240.00161 * 19 17 15 23 23 C 1.53002 * 117.49906 * 80.48488 * 14 13 12 24 24 C 1.53002 * 117.49925 * 149.14404 * 14 13 12 25 25 H 1.09002 * 109.46706 * 60.00731 * 1 2 3 26 26 H 1.09003 * 109.46814 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47310 * 300.00294 * 1 2 3 28 28 H 1.08999 * 109.47310 * 239.99706 * 2 1 3 29 29 H 1.09002 * 109.46706 * 119.99269 * 2 1 3 30 30 H 1.08999 * 109.47247 * 59.99667 * 3 2 1 31 31 H 1.08996 * 109.47073 * 299.99518 * 3 2 1 32 32 H 1.09002 * 109.47230 * 60.00595 * 6 4 3 33 33 H 1.09000 * 109.47257 * 180.02562 * 6 4 3 34 34 H 1.09001 * 109.47605 * 300.00047 * 6 4 3 35 35 H 0.97003 * 120.00317 * 25.00629 * 7 4 3 36 36 H 0.97000 * 119.99834 * 5.03638 * 12 10 8 37 37 H 1.08991 * 109.46950 * 64.77719 * 13 12 10 38 38 H 1.09002 * 109.46795 * 304.77265 * 13 12 10 39 39 H 0.97005 * 120.00851 * 184.99676 * 18 17 15 40 40 H 1.09007 * 117.49900 * 214.99948 * 23 14 13 41 41 H 1.08994 * 117.50021 * 0.02562 * 23 14 13 42 42 H 1.09005 * 117.49794 * 359.97438 * 24 14 13 43 43 H 1.09000 * 117.49885 * 144.96827 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0799 2.8795 0.1263 7 7 4.0589 0.8585 -1.2508 8 6 5.2809 0.2920 -1.2981 9 8 5.9760 0.2652 -0.3038 10 6 5.7797 -0.3033 -2.5749 11 8 5.1253 -0.1954 -3.5911 12 7 6.9565 -0.9599 -2.5978 13 6 7.4989 -1.4472 -3.8685 14 6 8.7718 -2.2537 -3.6038 15 6 9.9301 -1.4729 -3.0384 16 1 10.0955 -1.4487 -1.9714 17 6 10.7820 -0.7941 -3.8836 18 7 10.6386 -0.9007 -5.1865 19 14 12.1402 0.2771 -3.1781 20 1 12.0892 0.2281 -1.6948 21 1 13.4582 -0.2236 -3.6445 22 1 11.9532 1.6779 -3.6343 23 6 8.6068 -3.7041 -3.1456 24 6 9.0944 -3.4000 -4.5644 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.7163 3.3140 1.0575 33 1 5.1699 2.8796 0.1263 34 1 3.7170 3.4689 -0.7158 35 1 3.5031 0.8796 -2.0456 36 1 7.4444 -1.1097 -1.7729 37 1 7.7330 -0.5996 -4.5124 38 1 6.7613 -2.0830 -4.3583 39 1 11.2809 -0.4825 -5.7811 40 1 9.3361 -4.0936 -2.4352 41 1 7.5914 -4.0839 -3.0331 42 1 8.3995 -3.5800 -5.3847 43 1 10.1444 -3.5891 -4.7877 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321714810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:51 Heat of formation + Delta-G solvation = -71.417276 kcal Electronic energy + Delta-G solvation = -22317.349593 eV Core-core repulsion = 18976.585498 eV Total energy + Delta-G solvation = -3340.764095 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34025 -38.45260 -36.81360 -36.71128 -33.90090 -33.18652 -31.97122 -30.94983 -27.08633 -26.93991 -25.46907 -23.78548 -21.92571 -21.19970 -20.87733 -19.96458 -19.51734 -17.99917 -16.79602 -16.15447 -15.71514 -15.46285 -14.90981 -14.71646 -14.65622 -14.30214 -13.93800 -13.85316 -13.36842 -13.10074 -12.93322 -12.70165 -12.45032 -12.33999 -11.88503 -11.73888 -11.62099 -11.29866 -11.18373 -10.99551 -10.96719 -10.95262 -10.86304 -10.51099 -10.25075 -9.61428 -9.22925 -9.17600 -9.07695 -8.53377 -8.38619 -8.18042 -6.08880 -4.18473 1.81060 2.71631 3.25965 3.35221 3.39271 3.61913 4.05638 4.36003 4.39631 4.68919 4.71937 4.93000 5.08897 5.15655 5.18882 5.25043 5.34369 5.35220 5.49980 5.54136 5.61779 5.75336 5.84066 5.94174 5.96162 6.03569 6.09847 6.28610 6.37259 6.40098 6.47874 6.66962 6.75268 7.00733 7.08455 7.26269 7.33663 7.50244 7.81326 7.88934 8.17345 8.31724 8.53490 8.84082 9.49345 10.98178 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.003810 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.109305 B = 7346.857877 C = 8096.655935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.127 4.127 4 C 0.139 3.861 5 H 0.091 0.909 6 C -0.166 4.166 7 N -0.702 5.702 8 C 0.509 3.491 9 O -0.519 6.519 10 C 0.494 3.506 11 O -0.542 6.542 12 N -0.667 5.667 13 C 0.159 3.841 14 C 0.021 3.979 15 C -0.500 4.500 16 H 0.062 0.938 17 C 0.073 3.927 18 N -0.876 5.876 19 Si 0.890 3.110 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.210 4.210 24 C -0.139 4.139 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.410 0.590 36 H 0.414 0.586 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.261 0.739 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 3.482 8.723 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.164 4.164 4 C 0.034 3.966 5 H 0.109 0.891 6 C -0.224 4.224 7 N -0.356 5.356 8 C 0.290 3.710 9 O -0.394 6.394 10 C 0.274 3.726 11 O -0.421 6.421 12 N -0.316 5.316 13 C 0.037 3.963 14 C 0.020 3.980 15 C -0.538 4.538 16 H 0.081 0.919 17 C -0.131 4.131 18 N -0.512 5.512 19 Si 0.718 3.282 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.247 4.247 24 C -0.178 4.178 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.246 0.754 36 H 0.250 0.750 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.270 3.657 8.534 18.732 hybrid contribution 0.830 0.590 0.186 1.035 sum -15.440 4.247 8.720 18.234 Atomic orbital electron populations 1.21768 0.95739 1.01722 1.01686 1.21565 0.95862 0.96471 1.02705 1.21937 0.93542 0.97736 1.03227 1.21088 0.93643 0.94670 0.87157 0.89101 1.22196 1.02504 0.95651 1.02034 1.45869 1.17192 1.58348 1.14198 1.20484 0.82230 0.79018 0.89284 1.90748 1.55662 1.57004 1.35996 1.19978 0.83171 0.80968 0.88527 1.90707 1.57021 1.59662 1.34715 1.45895 1.19639 1.52737 1.13341 1.21206 0.93802 0.98430 0.82886 1.19035 0.93208 0.85675 1.00067 1.20428 1.10290 1.29937 0.93099 0.91944 1.24987 0.97366 0.95910 0.94822 1.69993 1.35552 1.43666 1.01958 0.86563 0.81594 0.80525 0.79535 1.19553 1.21020 1.20928 1.23034 0.99540 1.02916 0.99230 1.22475 1.00529 1.04297 0.90455 0.92708 0.92722 0.92829 0.91577 0.91817 0.90239 0.91149 0.91530 0.91734 0.92285 0.75364 0.75020 0.90831 0.93430 0.92908 0.90215 0.91656 0.91745 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -1.02 5.82 -26.73 -0.16 -1.18 16 3 C -0.13 -0.94 4.75 -26.73 -0.13 -1.07 16 4 C 0.14 1.41 2.57 -67.93 -0.17 1.23 16 5 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 6 C -0.17 -1.61 9.48 37.15 0.35 -1.26 16 7 N -0.70 -8.76 4.52 -54.24 -0.25 -9.00 16 8 C 0.51 8.32 7.85 -11.59 -0.09 8.23 16 9 O -0.52 -9.53 16.16 5.50 0.09 -9.44 16 10 C 0.49 9.30 7.88 -11.59 -0.09 9.21 16 11 O -0.54 -11.00 16.47 5.50 0.09 -10.91 16 12 N -0.67 -13.43 5.46 -60.73 -0.33 -13.76 16 13 C 0.16 3.55 5.53 -4.04 -0.02 3.53 16 14 C 0.02 0.49 1.47 -155.66 -0.23 0.26 16 15 C -0.50 -13.00 8.59 -34.44 -0.30 -13.30 16 16 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 17 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 18 N -0.88 -24.11 12.65 55.43 0.70 -23.40 16 19 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.21 -4.39 9.96 -26.69 -0.27 -4.65 16 24 C -0.14 -3.16 9.14 -26.69 -0.24 -3.41 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.60 7.75 -51.93 -0.40 0.20 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.41 4.70 8.08 -40.82 -0.33 4.37 16 36 H 0.41 8.26 7.84 -40.82 -0.32 7.94 16 37 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 38 H 0.05 1.02 8.05 -51.93 -0.42 0.61 16 39 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 40 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -28.93 363.96 -7.64 -36.57 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -7.33 Total: 9.87 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.07 Total: -1.21 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.12 Total: -46.17 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.18 Total: -20.35 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.93 -7.64 -36.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321714810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.849 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds