Wall clock time and date at job start Tue Mar 31 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47129 * 2 1 4 4 C 1.53002 * 109.47058 * 119.99574 * 2 1 3 5 5 H 1.08998 * 112.96711 * 173.74930 * 4 2 1 6 6 C 1.53949 * 113.76814 * 305.42453 * 4 2 1 7 7 C 1.53946 * 86.28771 * 137.90905 * 6 4 2 8 8 N 1.47575 * 86.12020 * 336.39485 * 7 6 4 9 9 C 1.34778 * 134.49384 * 204.64909 * 8 7 6 10 10 O 1.21350 * 119.99723 * 185.24275 * 9 8 7 11 11 C 1.49446 * 120.00137 * 5.23745 * 9 8 7 12 12 O 1.21350 * 120.00140 * 0.02562 * 11 9 8 13 13 N 1.34776 * 119.99975 * 180.02562 * 11 9 8 14 14 C 1.46503 * 120.00187 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47090 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46822 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.46972 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00271 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99754 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00432 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00094 * 179.97438 * 19 17 16 22 22 H 1.48513 * 109.46822 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47446 * 119.99460 * 21 19 17 24 24 H 1.48500 * 109.47243 * 240.00135 * 21 19 17 25 25 H 1.08998 * 109.47059 * 64.34496 * 1 2 3 26 26 H 1.08998 * 109.47066 * 184.33851 * 1 2 3 27 27 H 1.09000 * 109.47110 * 304.34304 * 1 2 3 28 28 H 1.08998 * 109.47421 * 239.99747 * 2 1 3 29 29 H 1.08995 * 109.47126 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46645 * 299.99731 * 3 2 1 31 31 H 1.08998 * 109.47176 * 59.99597 * 3 2 1 32 32 H 1.09000 * 113.74404 * 23.56805 * 6 4 2 33 33 H 1.08996 * 113.74130 * 252.25083 * 6 4 2 34 34 H 1.09003 * 113.77106 * 90.69424 * 7 6 4 35 35 H 1.09004 * 113.77083 * 222.08996 * 7 6 4 36 36 H 0.97004 * 120.00001 * 359.97438 * 13 11 9 37 37 H 1.09000 * 109.46594 * 300.00247 * 14 13 11 38 38 H 1.08996 * 109.46745 * 59.99359 * 14 13 11 39 39 H 1.08994 * 109.47343 * 299.99497 * 15 14 13 40 40 H 1.09000 * 109.47081 * 60.00410 * 15 14 13 41 41 H 1.09006 * 109.47326 * 300.00236 * 16 15 14 42 42 H 1.08995 * 109.47191 * 59.99679 * 16 15 14 43 43 H 0.96996 * 120.00052 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1223 -0.8500 1.2540 6 6 1.4769 -0.1554 2.5657 7 6 1.3210 -1.6204 3.0121 8 7 1.2908 -1.9505 1.5741 9 6 0.7829 -2.9665 0.8486 10 8 0.9944 -3.0249 -0.3449 11 6 -0.0407 -4.0212 1.5140 12 8 -0.2525 -3.9626 2.7075 13 7 -0.5482 -5.0374 0.7887 14 6 -1.3561 -6.0710 1.4408 15 6 -1.8058 -7.0988 0.4005 16 6 -2.6489 -8.1786 1.0818 17 6 -3.0913 -9.1913 0.0572 18 1 -2.8007 -9.0761 -0.9765 19 6 -3.8681 -10.2644 0.4394 20 7 -4.2226 -10.4045 1.6981 21 14 -4.4172 -11.5193 -0.8307 22 1 -3.8899 -11.1363 -2.1652 23 1 -3.8976 -12.8599 -0.4589 24 1 -5.9009 -11.5591 -0.8781 25 1 -0.3633 0.4449 -0.9263 26 1 -0.3633 -1.0247 0.0777 27 1 -0.3633 0.5798 0.8485 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 0.5294 0.3705 2.4476 33 1 2.2062 0.4061 3.1496 34 1 2.1920 -2.0153 3.5353 35 1 0.3837 -1.8247 3.5296 36 1 -0.3792 -5.0840 -0.1654 37 1 -0.7613 -6.5665 2.2082 38 1 -2.2317 -5.6120 1.8998 39 1 -2.4006 -6.6030 -0.3665 40 1 -0.9303 -7.5579 -0.0587 41 1 -2.0537 -8.6744 1.8487 42 1 -3.5243 -7.7199 1.5414 43 1 -4.7688 -11.1596 1.9670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341849957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:48 Heat of formation + Delta-G solvation = -55.500172 kcal Electronic energy + Delta-G solvation = -22035.748767 eV Core-core repulsion = 18695.674889 eV Total energy + Delta-G solvation = -3340.073878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15113 -39.43531 -37.77083 -35.60952 -34.68212 -33.33281 -31.23418 -30.10064 -27.45029 -27.19048 -26.35863 -24.51345 -22.89416 -21.91136 -20.81383 -20.37154 -18.82209 -17.78268 -16.98594 -16.56521 -16.34653 -15.80657 -15.48301 -15.04559 -14.58549 -14.42755 -14.27376 -13.71124 -13.60261 -13.45179 -12.86928 -12.73552 -12.49082 -12.31683 -12.01315 -11.87788 -11.80234 -11.78484 -11.53930 -11.28010 -11.18155 -10.93014 -10.75935 -10.57940 -10.56114 -9.90261 -9.68185 -9.29485 -9.10725 -9.04733 -8.92260 -8.38455 -6.03009 -4.05883 1.48719 2.15747 3.26506 3.30046 3.37340 3.39024 3.42285 4.02838 4.40318 4.43868 4.46755 4.57529 4.60036 4.79731 4.91983 5.07917 5.25710 5.28013 5.32461 5.33059 5.41587 5.55092 5.60379 5.60829 5.62318 5.69850 5.78924 5.85890 6.01789 6.07913 6.08618 6.30379 6.54646 6.72552 6.95511 7.22782 7.34722 7.61859 7.73328 7.76085 7.95629 8.11259 8.36959 9.00904 9.58542 11.08344 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039848 B = 0.002641 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.501736 B =10598.481951 C =11022.904677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C -0.142 4.142 4 C 0.141 3.859 5 H 0.097 0.903 6 C -0.155 4.155 7 C 0.108 3.892 8 N -0.617 5.617 9 C 0.529 3.471 10 O -0.521 6.521 11 C 0.502 3.498 12 O -0.524 6.524 13 N -0.693 5.693 14 C 0.115 3.885 15 C -0.122 4.122 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.410 0.590 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.489 24.239 0.913 27.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.200 4.200 4 C 0.039 3.961 5 H 0.114 0.886 6 C -0.192 4.192 7 C -0.014 4.014 8 N -0.354 5.354 9 C 0.313 3.687 10 O -0.397 6.397 11 C 0.282 3.718 12 O -0.401 6.401 13 N -0.345 5.345 14 C -0.007 4.007 15 C -0.160 4.160 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.246 0.754 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.244 23.925 1.130 27.370 hybrid contribution -0.240 -0.978 -1.064 1.465 sum 13.005 22.947 0.066 26.376 Atomic orbital electron populations 1.21829 0.94576 1.02183 1.01478 1.21215 0.96789 0.96174 0.97705 1.21747 1.00970 0.95017 1.02224 1.23037 0.96410 0.81125 0.95523 0.88570 1.23736 1.02892 0.96668 0.95949 1.23261 1.03836 0.92044 0.82298 1.49929 1.54106 1.21354 1.09977 1.20014 0.80819 0.81275 0.86594 1.90753 1.59394 1.74893 1.14636 1.20012 0.81434 0.83143 0.87224 1.90722 1.58963 1.75964 1.14406 1.46081 1.51040 1.24275 1.13141 1.21822 0.94167 0.87805 0.96912 1.21924 1.00509 0.96345 0.97269 1.19037 0.94400 0.91925 0.95981 1.21239 1.31881 1.08095 0.94769 0.92520 1.25031 0.96120 0.98051 0.95294 1.69972 1.37275 1.30421 1.15663 0.86519 0.78379 0.81298 0.81700 1.19722 1.20987 1.20990 0.92611 0.92633 0.92599 0.90014 0.92516 0.92214 0.92314 0.88393 0.89419 0.89383 0.88425 0.75399 0.91181 0.91185 0.92447 0.92454 0.96207 0.96202 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.56 37.16 0.32 -1.02 16 2 C -0.10 -0.83 2.65 -90.62 -0.24 -1.07 16 3 C -0.14 -0.81 9.05 37.16 0.34 -0.47 16 4 C 0.14 1.14 4.16 -66.86 -0.28 0.86 16 5 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 6 C -0.15 -0.93 6.93 -25.80 -0.18 -1.11 16 7 C 0.11 0.92 7.86 -2.98 -0.02 0.90 16 8 N -0.62 -6.91 2.88 -171.69 -0.49 -7.41 16 9 C 0.53 7.56 6.43 -11.59 -0.07 7.48 16 10 O -0.52 -8.29 16.32 5.50 0.09 -8.20 16 11 C 0.50 7.94 7.89 -11.59 -0.09 7.85 16 12 O -0.52 -9.11 14.99 5.50 0.08 -9.03 16 13 N -0.69 -10.90 5.55 -60.73 -0.34 -11.24 16 14 C 0.11 2.02 5.67 -4.04 -0.02 2.00 16 15 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.67 5.54 -51.93 -0.29 0.38 16 27 H 0.06 0.45 6.44 -51.93 -0.33 0.11 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.28 7.63 -51.93 -0.40 -0.11 16 32 H 0.10 0.59 6.21 -51.93 -0.32 0.27 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.96 7.20 -51.93 -0.37 0.59 16 36 H 0.41 5.96 7.94 -40.82 -0.32 5.63 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -32.42 350.79 -7.68 -40.10 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.08 Total: 0.07 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -0.95 Total: -0.09 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.10 Total: -44.72 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.17 Total: -17.23 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.42 -7.68 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341849957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.398 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds