Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47057 * 2 1 4 4 C 1.52994 * 109.46897 * 119.99943 * 2 1 3 5 5 C 1.53003 * 109.47057 * 174.99902 * 4 2 1 6 6 N 1.46501 * 109.47483 * 180.02562 * 5 4 2 7 7 C 1.46499 * 119.99912 * 270.00350 * 6 5 4 8 8 C 1.50700 * 109.47118 * 269.99711 * 7 6 5 9 9 H 1.08002 * 119.99971 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00102 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99673 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 119.99873 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47350 * 90.00493 * 12 10 8 14 14 H 1.48504 * 109.46866 * 209.99981 * 12 10 8 15 15 H 1.48495 * 109.47164 * 329.99677 * 12 10 8 16 16 C 1.34775 * 120.00049 * 89.99568 * 6 5 4 17 17 O 1.21275 * 119.99779 * 0.02562 * 16 6 5 18 18 C 1.50698 * 119.99733 * 180.02562 * 16 6 5 19 19 H 1.09002 * 115.56376 * 51.80741 * 18 16 6 20 20 C 1.52997 * 117.49765 * 197.49056 * 18 16 6 21 21 C 1.52996 * 60.00213 * 107.49190 * 20 18 16 22 22 H 1.08998 * 117.49685 * 107.48853 * 21 20 18 23 23 C 1.50707 * 117.50316 * 252.51411 * 21 20 18 24 24 N 1.34771 * 120.00046 * 201.88699 * 23 21 20 25 25 O 1.21281 * 119.99224 * 21.87855 * 23 21 20 26 26 H 1.09003 * 109.47229 * 300.00342 * 1 2 3 27 27 H 1.09001 * 109.47228 * 59.99974 * 1 2 3 28 28 H 1.08995 * 109.47376 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46685 * 240.00134 * 2 1 3 30 30 H 1.08998 * 109.47664 * 60.00127 * 3 2 1 31 31 H 1.08999 * 109.47116 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47123 * 300.00090 * 3 2 1 33 33 H 1.08997 * 109.47484 * 55.00257 * 4 2 1 34 34 H 1.08998 * 109.47427 * 294.99777 * 4 2 1 35 35 H 1.09001 * 109.47153 * 59.99760 * 5 4 2 36 36 H 1.08998 * 109.46900 * 300.00198 * 5 4 2 37 37 H 1.09006 * 109.47357 * 29.99615 * 7 6 5 38 38 H 1.08999 * 109.47390 * 149.99561 * 7 6 5 39 39 H 0.96999 * 119.99668 * 180.02562 * 11 10 8 40 40 H 1.09006 * 117.50225 * 0.02562 * 20 18 16 41 41 H 1.08998 * 117.51968 * 214.97388 * 20 18 16 42 42 H 0.96993 * 120.00093 * 359.97438 * 24 23 21 43 43 H 0.97000 * 119.99713 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8311 1.1880 6 7 4.0531 -1.5222 2.3838 7 6 4.4015 -0.7550 3.5823 8 6 5.8554 -0.3631 3.5228 9 1 6.4597 -0.6565 2.6771 10 6 6.4146 0.3692 4.5486 11 7 7.6833 0.7116 4.4964 12 14 5.3697 0.8761 6.0117 13 1 5.4390 -0.1758 7.0576 14 1 5.8791 2.1572 6.5636 15 1 3.9605 1.0500 5.5770 16 6 4.1818 -2.8638 2.3815 17 8 3.8937 -3.4988 1.3893 18 6 4.6835 -3.5747 3.6119 19 1 4.1641 -3.3334 4.5393 20 6 5.1957 -5.0063 3.4410 21 6 6.1831 -3.8660 3.6973 22 1 6.6502 -3.8163 4.6809 23 6 7.0454 -3.4198 2.5446 24 7 8.2003 -2.7664 2.7804 25 8 6.7000 -3.6490 1.4048 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6054 -1.7198 1.2952 34 1 1.7516 -0.1583 2.1369 35 1 3.9995 0.1675 1.1420 36 1 3.8531 -1.3940 0.3002 37 1 3.7850 0.1426 3.6311 38 1 4.2256 -1.3652 4.4682 39 1 8.0768 1.2264 5.2182 40 1 5.1702 -5.4338 2.4386 41 1 5.0135 -5.7069 4.2559 42 1 8.4763 -2.5830 3.6920 43 1 8.7554 -2.4796 2.0385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464918796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -65.913280 kcal Electronic energy + Delta-G solvation = -23727.986673 eV Core-core repulsion = 20387.461249 eV Total energy + Delta-G solvation = -3340.525424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.90124 -38.29715 -36.62050 -35.16305 -34.67641 -32.81696 -32.46693 -29.52520 -27.47517 -26.98421 -24.83120 -23.78928 -22.65664 -21.65697 -19.76965 -19.58147 -18.09961 -17.08790 -16.90692 -16.42914 -15.64580 -15.27297 -14.92932 -14.69818 -14.14285 -13.89259 -13.72959 -13.64333 -13.21559 -12.91062 -12.61508 -12.43560 -12.20995 -12.05355 -11.90564 -11.64422 -11.41479 -11.15356 -10.86419 -10.79205 -10.60534 -10.45315 -10.28690 -10.21242 -10.10127 -10.01108 -9.58332 -9.32458 -8.92881 -8.82664 -8.70742 -7.61143 -6.22299 -4.20773 2.98901 3.13100 3.23004 3.25365 3.57729 3.82178 4.10989 4.25423 4.55694 5.06843 5.07710 5.12016 5.15402 5.17993 5.29328 5.31105 5.54778 5.66153 5.71744 5.73142 5.86326 5.91230 5.99211 6.01615 6.03976 6.11486 6.15327 6.26467 6.40091 6.40810 6.48216 6.54928 6.65198 6.66005 6.75933 7.43902 7.49419 7.51066 8.10991 8.21990 8.47286 8.87174 9.02644 9.10292 9.39487 10.89577 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.007740 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.630788 B = 3616.552311 C = 5023.437720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.127 4.127 5 C 0.123 3.877 6 N -0.589 5.589 7 C 0.208 3.792 8 C -0.528 4.528 9 H 0.084 0.916 10 C 0.078 3.922 11 N -0.891 5.891 12 Si 0.865 3.135 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.266 1.266 16 C 0.548 3.452 17 O -0.546 6.546 18 C -0.141 4.141 19 H 0.126 0.874 20 C -0.131 4.131 21 C -0.155 4.155 22 H 0.122 0.878 23 C 0.554 3.446 24 N -0.833 5.833 25 O -0.544 6.544 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.030 0.970 38 H 0.026 0.974 39 H 0.263 0.737 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.403 0.597 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 -3.463 0.054 7.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.166 4.166 5 C -0.001 4.001 6 N -0.319 5.319 7 C 0.086 3.914 8 C -0.567 4.567 9 H 0.102 0.898 10 C -0.125 4.125 11 N -0.529 5.529 12 Si 0.692 3.308 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.191 1.191 16 C 0.335 3.665 17 O -0.424 6.424 18 C -0.163 4.163 19 H 0.144 0.856 20 C -0.169 4.169 21 C -0.177 4.177 22 H 0.140 0.860 23 C 0.338 3.662 24 N -0.394 5.394 25 O -0.422 6.422 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.232 0.768 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.657 -3.896 -1.019 7.780 hybrid contribution 0.069 0.984 1.423 1.732 sum -6.588 -2.912 0.405 7.214 Atomic orbital electron populations 1.21818 0.95613 1.01426 1.01270 1.21047 0.95310 0.96370 0.98595 1.21902 1.01745 0.95806 1.01219 1.22003 0.96746 1.00394 0.97454 1.21329 0.92546 0.97655 0.88531 1.47755 1.63622 1.05529 1.15035 1.19790 0.97331 0.91447 0.82823 1.21444 0.93264 1.34336 1.07621 0.89771 1.24807 0.94741 0.95306 0.97650 1.69877 1.11583 1.38461 1.32995 0.87030 0.81461 0.78661 0.83650 1.20114 1.21154 1.19098 1.19228 0.77417 0.82178 0.87639 1.90600 1.51110 1.66231 1.34467 1.22051 0.95479 0.99197 0.99574 0.85633 1.23006 0.99444 0.90011 1.04410 1.22094 0.91082 1.04846 0.99643 0.86002 1.19309 0.80950 0.76929 0.89004 1.43531 1.23633 1.59831 1.12395 1.90768 1.71518 1.57046 1.22849 0.92919 0.93047 0.92901 0.91205 0.92774 0.92007 0.93198 0.91998 0.92112 0.90401 0.90943 0.95171 0.95586 0.92664 0.86871 0.87792 0.76813 0.77361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.19 37.16 0.34 -1.34 16 2 C -0.09 -1.28 2.92 -90.62 -0.26 -1.54 16 3 C -0.15 -1.93 8.95 37.16 0.33 -1.60 16 4 C -0.13 -2.06 5.01 -26.73 -0.13 -2.19 16 5 C 0.12 2.37 5.16 -4.04 -0.02 2.35 16 6 N -0.59 -12.51 2.46 -175.06 -0.43 -12.94 16 7 C 0.21 4.53 4.06 -5.19 -0.02 4.51 16 8 C -0.53 -13.02 9.94 -34.44 -0.34 -13.36 16 9 H 0.08 2.34 7.68 -52.49 -0.40 1.93 16 10 C 0.08 1.94 5.47 -17.82 -0.10 1.85 16 11 N -0.89 -23.55 13.96 55.43 0.77 -22.77 16 12 Si 0.86 18.94 27.47 -169.99 -4.67 14.27 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 14 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.27 -5.67 6.54 56.52 0.37 -5.30 16 16 C 0.55 11.91 5.75 -10.99 -0.06 11.85 16 17 O -0.55 -13.25 15.38 -5.24 -0.08 -13.33 16 18 C -0.14 -2.59 4.83 -91.77 -0.44 -3.04 16 19 H 0.13 2.02 7.22 -51.93 -0.37 1.65 16 20 C -0.13 -2.09 9.56 -26.73 -0.26 -2.35 16 21 C -0.15 -2.70 6.19 -91.77 -0.57 -3.26 16 22 H 0.12 1.80 8.14 -51.93 -0.42 1.37 16 23 C 0.55 11.13 7.07 -10.98 -0.08 11.05 16 24 N -0.83 -14.66 8.82 31.22 0.28 -14.38 16 25 O -0.54 -13.07 15.55 -5.24 -0.08 -13.15 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.50 6.50 -51.93 -0.34 1.17 16 36 H 0.07 1.51 7.42 -51.93 -0.39 1.13 16 37 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 38 H 0.03 0.55 5.77 -51.93 -0.30 0.25 16 39 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 40 H 0.11 2.07 7.48 -51.93 -0.39 1.69 16 41 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.40 6.55 8.83 -40.82 -0.36 6.18 16 43 H 0.40 6.69 8.93 -40.82 -0.36 6.33 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -31.06 351.73 -7.54 -38.61 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -7.02 Total: 15.47 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.61 Total: 2.92 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.62 Total: -50.09 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.16 Total: -26.48 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.67 Total: 14.27 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.06 -7.54 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464918796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.305 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds