Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47057 * 2 1 4 4 C 1.52994 * 109.46897 * 119.99943 * 2 1 3 5 5 C 1.53003 * 109.47057 * 174.99902 * 4 2 1 6 6 N 1.46501 * 109.47483 * 180.02562 * 5 4 2 7 7 C 1.46499 * 119.99912 * 270.00350 * 6 5 4 8 8 C 1.50700 * 109.47118 * 269.99711 * 7 6 5 9 9 H 1.08002 * 119.99971 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00102 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99673 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 119.99873 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47350 * 90.00493 * 12 10 8 14 14 H 1.48504 * 109.46866 * 209.99981 * 12 10 8 15 15 H 1.48495 * 109.47164 * 329.99677 * 12 10 8 16 16 C 1.34775 * 120.00049 * 89.99568 * 6 5 4 17 17 O 1.21275 * 119.99779 * 0.02562 * 16 6 5 18 18 C 1.50698 * 119.99733 * 180.02562 * 16 6 5 19 19 H 1.09002 * 115.56376 * 51.80741 * 18 16 6 20 20 C 1.52997 * 117.49765 * 197.49056 * 18 16 6 21 21 C 1.52996 * 60.00213 * 107.49190 * 20 18 16 22 22 H 1.08998 * 117.49685 * 107.48853 * 21 20 18 23 23 C 1.50707 * 117.50316 * 252.51411 * 21 20 18 24 24 N 1.34771 * 120.00046 * 201.88699 * 23 21 20 25 25 O 1.21281 * 119.99224 * 21.87855 * 23 21 20 26 26 H 1.09003 * 109.47229 * 300.00342 * 1 2 3 27 27 H 1.09001 * 109.47228 * 59.99974 * 1 2 3 28 28 H 1.08995 * 109.47376 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46685 * 240.00134 * 2 1 3 30 30 H 1.08998 * 109.47664 * 60.00127 * 3 2 1 31 31 H 1.08999 * 109.47116 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47123 * 300.00090 * 3 2 1 33 33 H 1.08997 * 109.47484 * 55.00257 * 4 2 1 34 34 H 1.08998 * 109.47427 * 294.99777 * 4 2 1 35 35 H 1.09001 * 109.47153 * 59.99760 * 5 4 2 36 36 H 1.08998 * 109.46900 * 300.00198 * 5 4 2 37 37 H 1.09006 * 109.47357 * 29.99615 * 7 6 5 38 38 H 1.08999 * 109.47390 * 149.99561 * 7 6 5 39 39 H 0.96999 * 119.99668 * 180.02562 * 11 10 8 40 40 H 1.09006 * 117.50225 * 0.02562 * 20 18 16 41 41 H 1.08998 * 117.51968 * 214.97388 * 20 18 16 42 42 H 0.96993 * 120.00093 * 359.97438 * 24 23 21 43 43 H 0.97000 * 119.99713 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8311 1.1880 6 7 4.0531 -1.5222 2.3838 7 6 4.4015 -0.7550 3.5823 8 6 5.8554 -0.3631 3.5228 9 1 6.4597 -0.6565 2.6771 10 6 6.4146 0.3692 4.5486 11 7 7.6833 0.7116 4.4964 12 14 5.3697 0.8761 6.0117 13 1 5.4390 -0.1758 7.0576 14 1 5.8791 2.1572 6.5636 15 1 3.9605 1.0500 5.5770 16 6 4.1818 -2.8638 2.3815 17 8 3.8937 -3.4988 1.3893 18 6 4.6835 -3.5747 3.6119 19 1 4.1641 -3.3334 4.5393 20 6 5.1957 -5.0063 3.4410 21 6 6.1831 -3.8660 3.6973 22 1 6.6502 -3.8163 4.6809 23 6 7.0454 -3.4198 2.5446 24 7 8.2003 -2.7664 2.7804 25 8 6.7000 -3.6490 1.4048 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6054 -1.7198 1.2952 34 1 1.7516 -0.1583 2.1369 35 1 3.9995 0.1675 1.1420 36 1 3.8531 -1.3940 0.3002 37 1 3.7850 0.1426 3.6311 38 1 4.2256 -1.3652 4.4682 39 1 8.0768 1.2264 5.2182 40 1 5.1702 -5.4338 2.4386 41 1 5.0135 -5.7069 4.2559 42 1 8.4763 -2.5830 3.6920 43 1 8.7554 -2.4796 2.0385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464918796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -86.456619 kcal Electronic energy + Delta-G solvation = -23728.877499 eV Core-core repulsion = 20387.461249 eV Total energy + Delta-G solvation = -3341.416250 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47251 -39.92129 -37.97171 -36.60674 -36.31876 -34.43548 -34.29906 -31.03171 -29.19027 -28.01280 -26.27514 -25.19677 -24.44646 -23.09098 -21.15040 -20.87881 -19.70311 -18.90804 -18.56093 -17.93938 -17.28003 -16.80721 -16.44975 -16.04848 -15.85044 -15.29944 -15.22611 -15.00280 -14.61339 -14.51276 -14.27133 -13.92973 -13.65773 -13.55344 -13.15702 -12.96555 -12.76577 -12.65994 -12.44124 -12.18240 -12.08820 -11.78506 -11.62212 -11.55428 -11.49845 -11.47071 -11.35619 -10.97436 -10.67675 -10.55671 -10.38657 -9.32383 -8.14693 -6.18087 1.43689 1.44438 1.49736 1.55118 1.94549 2.27235 2.43506 2.68815 3.12775 3.17807 3.69097 3.85679 3.90151 3.91902 3.99269 4.06323 4.15153 4.30226 4.37712 4.55562 4.65903 4.71431 4.76434 4.82027 4.82622 4.87040 4.90765 4.95474 5.02348 5.10924 5.13765 5.20377 5.30467 5.45883 5.48676 5.57075 5.80945 6.01153 6.35582 6.63119 6.71941 6.87215 7.38160 7.48596 7.51370 8.98915 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.007740 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.630788 B = 3616.552311 C = 5023.437720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.113 4.113 5 C 0.122 3.878 6 N -0.594 5.594 7 C 0.214 3.786 8 C -0.524 4.524 9 H 0.043 0.957 10 C 0.037 3.963 11 N -0.926 5.926 12 Si 0.923 3.077 13 H -0.258 1.258 14 H -0.295 1.295 15 H -0.253 1.253 16 C 0.538 3.462 17 O -0.582 6.582 18 C -0.160 4.160 19 H 0.156 0.844 20 C -0.107 4.107 21 C -0.159 4.159 22 H 0.156 0.844 23 C 0.543 3.457 24 N -0.822 5.822 25 O -0.594 6.594 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.263 0.737 40 H 0.083 0.917 41 H 0.155 0.845 42 H 0.411 0.589 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.990 -3.397 2.355 8.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.152 4.152 5 C -0.001 4.001 6 N -0.324 5.324 7 C 0.092 3.908 8 C -0.563 4.563 9 H 0.061 0.939 10 C -0.163 4.163 11 N -0.565 5.565 12 Si 0.748 3.252 13 H -0.183 1.183 14 H -0.222 1.222 15 H -0.177 1.177 16 C 0.327 3.673 17 O -0.463 6.463 18 C -0.181 4.181 19 H 0.174 0.826 20 C -0.145 4.145 21 C -0.181 4.181 22 H 0.173 0.827 23 C 0.329 3.671 24 N -0.382 5.382 25 O -0.475 6.475 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.173 0.827 42 H 0.241 0.759 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -8.355 -3.822 1.306 9.281 hybrid contribution 0.709 0.992 0.600 1.358 sum -7.646 -2.831 1.906 8.373 Atomic orbital electron populations 1.21770 0.93545 1.01798 1.02479 1.21051 0.96984 0.96374 0.96830 1.21874 1.00610 0.95478 1.02426 1.21873 0.93936 1.00228 0.99146 1.21366 0.94906 0.96573 0.87266 1.47894 1.63482 1.05782 1.15242 1.19705 0.95424 0.91964 0.83704 1.21388 0.94290 1.34292 1.06288 0.93862 1.25427 0.95623 0.95144 1.00131 1.70008 1.13282 1.39320 1.33938 0.86087 0.80333 0.78165 0.80614 1.18303 1.22176 1.17712 1.19900 0.76726 0.82200 0.88488 1.90571 1.52648 1.66863 1.36194 1.22215 0.96073 1.00779 0.99018 0.82644 1.23114 0.97103 0.89615 1.04665 1.22259 0.90316 1.05699 0.99812 0.82654 1.19921 0.81399 0.76494 0.89276 1.43492 1.23047 1.58688 1.12932 1.90745 1.72676 1.59096 1.24993 0.92212 0.91335 0.92986 0.91997 0.92289 0.93758 0.91263 0.93137 0.91450 0.90944 0.93576 0.94714 0.93487 0.92734 0.89826 0.82720 0.75851 0.77313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.19 71.98 0.66 -2.29 16 2 C -0.09 -2.47 2.92 -10.80 -0.03 -2.50 16 3 C -0.15 -3.63 8.95 71.98 0.64 -2.99 16 4 C -0.11 -3.64 5.01 30.59 0.15 -3.48 16 5 C 0.12 4.85 5.16 86.38 0.45 5.30 16 6 N -0.59 -25.29 2.46 -826.15 -2.03 -27.32 16 7 C 0.21 9.00 4.06 85.63 0.35 9.35 16 8 C -0.52 -25.64 9.94 25.60 0.25 -25.39 16 9 H 0.04 2.46 7.68 -2.91 -0.02 2.44 16 10 C 0.04 1.79 5.47 84.66 0.46 2.25 16 11 N -0.93 -48.82 13.96 21.45 0.30 -48.52 16 12 Si 0.92 37.16 27.47 68.60 1.88 39.05 16 13 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 14 H -0.30 -12.34 7.11 99.48 0.71 -11.63 16 15 H -0.25 -9.60 6.54 99.48 0.65 -8.95 16 16 C 0.54 23.44 5.75 87.66 0.50 23.94 16 17 O -0.58 -29.12 15.38 7.31 0.11 -29.01 16 18 C -0.16 -5.53 4.83 -11.54 -0.06 -5.58 16 19 H 0.16 4.39 7.22 -2.39 -0.02 4.37 16 20 C -0.11 -3.19 9.56 30.59 0.29 -2.89 16 21 C -0.16 -5.25 6.19 -11.54 -0.07 -5.32 16 22 H 0.16 4.02 8.14 -2.39 -0.02 4.00 16 23 C 0.54 22.05 7.07 87.66 0.62 22.67 16 24 N -0.82 -29.31 8.82 -173.53 -1.53 -30.84 16 25 O -0.59 -29.65 15.55 7.29 0.11 -29.53 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.23 6.56 -2.39 -0.02 1.22 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.07 2.91 6.50 -2.39 -0.02 2.89 16 36 H 0.05 2.05 7.42 -2.39 -0.02 2.03 16 37 H 0.03 1.44 7.13 -2.38 -0.02 1.43 16 38 H 0.05 1.81 5.77 -2.39 -0.01 1.79 16 39 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 40 H 0.08 3.04 7.48 -2.38 -0.02 3.02 16 41 H 0.16 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.41 13.23 8.83 -92.71 -0.82 12.41 16 43 H 0.40 13.91 8.93 -92.71 -0.83 13.08 16 Total: -1.00 -69.20 351.73 2.39 -66.81 By element: Atomic # 1 Polarization: 46.99 SS G_CDS: -0.68 Total: 46.30 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 4.23 Total: 13.06 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -3.26 Total: -106.68 kcal Atomic # 8 Polarization: -58.77 SS G_CDS: 0.23 Total: -58.54 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 1.88 Total: 39.05 kcal Total: -69.20 2.39 -66.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464918796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.648 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds