Wall clock time and date at job start Tue Mar 31 2020 05:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 112.85085 * 2 1 4 4 C 1.53778 * 113.61377 * 228.69184 * 2 1 3 5 5 H 1.09005 * 113.61187 * 105.39025 * 4 2 1 6 6 N 1.46897 * 113.61872 * 334.56938 * 4 2 1 7 7 C 1.53957 * 87.11297 * 220.08831 * 4 2 1 8 8 C 1.53783 * 113.61443 * 131.19569 * 2 1 3 9 9 H 1.09009 * 113.61210 * 25.35060 * 8 2 1 10 10 C 1.50701 * 113.61577 * 254.53284 * 8 2 1 11 11 O 1.21279 * 119.99905 * 23.63203 * 10 8 2 12 12 N 1.34772 * 119.99718 * 203.63418 * 10 8 2 13 13 C 1.47023 * 125.65168 * 359.97305 * 12 10 8 14 14 C 1.54323 * 107.27409 * 178.98827 * 13 12 10 15 15 C 1.55166 * 102.93985 * 337.80953 * 14 13 12 16 16 O 1.42904 * 111.00016 * 277.42889 * 15 14 13 17 17 C 1.50696 * 111.00434 * 153.57610 * 15 14 13 18 18 H 1.07997 * 119.99973 * 241.44926 * 17 15 14 19 19 C 1.37877 * 120.00215 * 61.45279 * 17 15 14 20 20 N 1.31515 * 119.99700 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00265 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47115 * 89.99892 * 21 19 17 23 23 H 1.48500 * 109.46973 * 209.99764 * 21 19 17 24 24 H 1.48495 * 109.46873 * 329.99745 * 21 19 17 25 25 C 1.47429 * 125.64419 * 180.02562 * 12 10 8 26 26 H 1.08996 * 109.47418 * 288.80472 * 1 2 3 27 27 H 1.09001 * 109.46755 * 48.80594 * 1 2 3 28 28 H 1.09003 * 109.47083 * 168.79988 * 1 2 3 29 29 H 1.08997 * 109.47582 * 177.11648 * 3 2 1 30 30 H 1.08999 * 109.47430 * 297.12125 * 3 2 1 31 31 H 1.09000 * 109.47117 * 57.12003 * 3 2 1 32 32 H 1.00900 * 111.00066 * 179.97438 * 6 4 2 33 33 H 1.00897 * 110.99990 * 303.95470 * 6 4 2 34 34 H 1.08994 * 113.62028 * 270.84680 * 7 4 2 35 35 H 1.09001 * 113.66610 * 139.88820 * 7 4 2 36 36 H 1.08995 * 109.88298 * 59.56999 * 13 12 10 37 37 H 1.09002 * 110.01049 * 298.47599 * 13 12 10 38 38 H 1.08993 * 110.72290 * 219.44438 * 14 13 12 39 39 H 1.09002 * 110.72195 * 96.16335 * 14 13 12 40 40 H 0.96706 * 113.99855 * 298.54182 * 16 15 14 41 41 H 0.97003 * 119.99963 * 179.97438 * 20 19 17 42 42 H 1.08997 * 110.37047 * 85.24339 * 25 12 10 43 43 H 1.09000 * 110.36796 * 322.91726 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9301 -1.0584 5 1 2.5638 -0.4007 -1.9148 6 7 1.2680 -2.0416 -1.4477 7 6 3.1928 -1.3159 0.0025 8 6 2.1460 -0.9281 1.0603 9 1 1.4939 -1.7515 1.3517 10 6 2.7253 -0.1938 2.2420 11 8 2.3276 0.9177 2.5196 12 7 3.6853 -0.7725 2.9903 13 6 4.2563 -2.1089 2.7676 14 6 5.3336 -2.3330 3.8495 15 6 5.7050 -0.8877 4.2748 16 8 6.6539 -0.3161 3.3721 17 6 6.2223 -0.8570 5.6898 18 1 5.6985 -0.2886 6.4440 19 6 7.3643 -1.5546 6.0216 20 7 8.0019 -2.2472 5.1032 21 14 8.0060 -1.5161 7.7756 22 1 7.4000 -2.6295 8.5489 23 1 9.4833 -1.6669 7.7656 24 1 7.6449 -0.2211 8.4063 25 6 4.3359 -0.1707 4.1684 26 1 -0.3634 0.3312 0.9728 27 1 -0.3633 0.6769 -0.7733 28 1 -0.3633 -1.0081 -0.1996 29 1 3.2110 1.3462 0.0517 30 1 1.8336 1.9267 -0.9146 31 1 1.7511 1.9613 0.8630 32 1 1.7098 -2.6252 -2.1423 33 1 0.9918 -2.5833 -0.6425 34 1 4.0725 -0.6724 0.0024 35 1 3.4432 -2.3768 0.0046 36 1 4.7095 -2.1581 1.7775 37 1 3.4780 -2.8668 2.8569 38 1 6.1993 -2.8464 3.4313 39 1 4.9238 -2.8896 4.6924 40 1 7.4948 -0.7921 3.3320 41 1 8.8056 -2.7378 5.3366 42 1 3.7420 -0.3525 5.0640 43 1 4.4788 0.8993 4.0176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576372147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:06 Heat of formation + Delta-G solvation = -65.819446 kcal Electronic energy + Delta-G solvation = -23785.740861 eV Core-core repulsion = 20445.219506 eV Total energy + Delta-G solvation = -3340.521355 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85733 -38.58927 -36.94178 -34.31611 -32.25672 -32.24492 -30.71003 -29.49259 -28.31138 -27.19250 -25.85180 -24.46374 -22.60499 -22.04723 -19.90437 -19.17771 -17.78755 -17.28853 -16.80600 -15.74130 -15.34028 -15.07398 -14.96321 -14.83290 -14.20461 -14.15783 -13.67251 -13.32321 -13.12112 -12.89480 -12.51978 -12.24531 -12.09763 -11.90337 -11.82863 -11.60054 -11.38815 -11.34281 -11.17849 -10.90843 -10.79882 -10.63967 -10.50228 -10.24911 -10.21242 -10.03800 -9.41734 -9.05047 -8.79674 -8.70552 -8.24914 -7.94525 -6.31569 -4.39549 3.11842 3.17404 3.25262 3.29542 3.59025 4.23786 4.24546 4.38472 4.60063 4.70983 4.85391 4.96240 5.20726 5.36911 5.50139 5.55168 5.56420 5.67976 5.71578 5.83286 5.84796 5.90604 6.00637 6.02021 6.10462 6.18205 6.26799 6.30426 6.42206 6.47787 6.62793 6.68289 6.87429 6.97829 6.98900 7.25983 7.26609 7.31198 7.70207 7.99710 8.18839 8.62793 8.71888 9.27442 9.36103 10.75815 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035549 B = 0.004301 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.447513 B = 6507.941858 C = 6815.407270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.050 4.050 3 C -0.129 4.129 4 C 0.075 3.925 5 H 0.091 0.909 6 N -0.825 5.825 7 C -0.161 4.161 8 C -0.124 4.124 9 H 0.107 0.893 10 C 0.533 3.467 11 O -0.549 6.549 12 N -0.605 5.605 13 C 0.100 3.900 14 C -0.137 4.137 15 C 0.249 3.751 16 O -0.582 6.582 17 C -0.536 4.536 18 H 0.064 0.936 19 C 0.074 3.926 20 N -0.896 5.896 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.119 3.881 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.342 0.658 33 H 0.340 0.660 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.380 0.620 41 H 0.268 0.732 42 H 0.070 0.930 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.123 -2.753 -10.552 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.051 4.051 3 C -0.186 4.186 4 C -0.037 4.037 5 H 0.109 0.891 6 N -0.354 5.354 7 C -0.201 4.201 8 C -0.145 4.145 9 H 0.125 0.875 10 C 0.321 3.679 11 O -0.429 6.429 12 N -0.337 5.337 13 C -0.023 4.023 14 C -0.175 4.175 15 C 0.208 3.792 16 O -0.391 6.391 17 C -0.574 4.574 18 H 0.082 0.918 19 C -0.129 4.129 20 N -0.535 5.535 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.002 4.002 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.229 0.771 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.233 -1.266 -10.841 14.962 hybrid contribution 1.776 -1.364 1.551 2.724 sum -8.457 -2.630 -9.290 12.835 Atomic orbital electron populations 1.21571 0.93547 1.02189 1.01147 1.21726 0.96012 0.94706 0.92671 1.21706 1.00343 0.94271 1.02288 1.22642 0.91597 0.93314 0.96163 0.89083 1.58677 1.44681 1.15035 1.16976 1.23758 0.98101 1.01854 0.96411 1.22814 0.98987 0.99680 0.93039 0.87513 1.19958 0.78999 0.85992 0.82923 1.90603 1.61390 1.19823 1.71036 1.48624 1.37419 1.18011 1.29654 1.22195 0.96359 0.83263 1.00493 1.23181 0.96660 1.01473 0.96221 1.19603 0.84443 0.86751 0.88389 1.86148 1.28720 1.58249 1.65966 1.21455 1.10737 1.30908 0.94301 0.91754 1.24979 0.96014 0.93923 0.98001 1.69718 1.18845 1.31436 1.33483 0.86423 0.77983 0.78673 0.83964 1.20465 1.21014 1.19662 1.22349 0.93219 0.98506 0.86152 0.92919 0.92772 0.91698 0.93078 0.93269 0.89555 0.84473 0.84615 0.89091 0.91012 0.92343 0.93278 0.89617 0.91468 0.77073 0.92251 0.91221 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.02 37.16 0.34 -1.17 16 2 C -0.05 -0.64 1.17 -153.70 -0.18 -0.82 16 3 C -0.13 -1.83 7.65 37.16 0.28 -1.55 16 4 C 0.08 0.81 4.64 -66.81 -0.31 0.50 16 5 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 6 N -0.83 -7.28 8.31 -3.90 -0.03 -7.31 16 7 C -0.16 -1.95 5.14 -25.82 -0.13 -2.09 16 8 C -0.12 -1.71 2.82 -90.96 -0.26 -1.97 16 9 H 0.11 1.32 7.67 -51.92 -0.40 0.93 16 10 C 0.53 9.85 6.77 -10.99 -0.07 9.78 16 11 O -0.55 -11.67 14.07 5.56 0.08 -11.60 16 12 N -0.60 -11.80 3.33 -170.52 -0.57 -12.37 16 13 C 0.10 1.77 6.12 -3.06 -0.02 1.75 16 14 C -0.14 -2.88 5.38 -24.89 -0.13 -3.02 16 15 C 0.25 5.92 0.87 -89.62 -0.08 5.84 16 16 O -0.58 -14.62 13.16 -35.23 -0.46 -15.08 16 17 C -0.54 -13.85 8.27 -34.44 -0.28 -14.13 16 18 H 0.06 1.67 7.79 -52.49 -0.41 1.26 16 19 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 20 N -0.90 -22.71 10.76 55.43 0.60 -22.11 16 21 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C 0.12 2.67 6.08 -2.53 -0.02 2.65 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.70 6.55 -51.93 -0.34 0.36 16 29 H 0.05 0.78 7.16 -51.93 -0.37 0.41 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.43 6.28 -51.93 -0.33 1.10 16 32 H 0.34 2.44 9.08 -39.29 -0.36 2.08 16 33 H 0.34 2.83 7.67 -39.29 -0.30 2.53 16 34 H 0.09 1.28 7.56 -51.93 -0.39 0.88 16 35 H 0.07 0.78 7.82 -51.93 -0.41 0.37 16 36 H 0.06 0.98 6.50 -51.93 -0.34 0.64 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.89 7.55 -51.93 -0.39 1.50 16 39 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 40 H 0.38 9.48 7.57 45.56 0.34 9.83 16 41 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 42 H 0.07 1.52 8.03 -51.93 -0.42 1.11 16 43 H 0.07 1.66 8.04 -51.93 -0.42 1.24 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -27.75 331.99 -7.55 -35.30 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -6.18 Total: 15.64 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -0.96 Total: -2.46 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.00 Total: -41.79 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.39 Total: -26.68 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.75 -7.55 -35.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576372147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.521 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds