Wall clock time and date at job start Tue Mar 31 2020 05:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50703 * 119.99779 * 2 1 4 4 C 1.30997 * 120.00415 * 180.02562 * 2 1 3 5 5 C 1.50696 * 120.00415 * 179.97438 * 4 2 1 6 6 C 1.50703 * 119.99806 * 359.97438 * 4 2 1 7 7 C 1.50700 * 109.46962 * 95.00116 * 6 4 2 8 8 O 1.21280 * 120.00210 * 359.97438 * 7 6 4 9 9 N 1.34781 * 120.00044 * 180.02562 * 7 6 4 10 10 C 1.46494 * 119.99862 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46928 * 179.97438 * 10 9 7 12 12 O 1.42899 * 113.41348 * 313.20372 * 11 10 9 13 13 C 1.53496 * 114.20479 * 180.02562 * 11 10 9 14 14 N 1.47066 * 87.98324 * 220.34620 * 13 11 10 15 15 C 1.36944 * 136.05683 * 207.08528 * 14 13 11 16 16 H 1.08004 * 119.99874 * 6.90177 * 15 14 13 17 17 C 1.38808 * 119.99887 * 186.89762 * 15 14 13 18 18 N 1.31620 * 119.99758 * 172.36849 * 17 15 14 19 19 Si 1.86803 * 120.00116 * 352.64805 * 17 15 14 20 20 H 1.48502 * 109.46980 * 175.03997 * 19 17 15 21 21 H 1.48501 * 109.46832 * 295.03703 * 19 17 15 22 22 H 1.48495 * 109.47214 * 55.03946 * 19 17 15 23 23 C 1.47058 * 87.88471 * 27.34220 * 14 13 11 24 24 H 1.09004 * 109.47107 * 269.99876 * 1 2 3 25 25 H 1.09001 * 109.47376 * 29.99900 * 1 2 3 26 26 H 1.08994 * 109.47329 * 150.00068 * 1 2 3 27 27 H 1.08996 * 109.47466 * 240.00013 * 3 2 1 28 28 H 1.08993 * 109.47181 * 0.02562 * 3 2 1 29 29 H 1.09008 * 109.46951 * 120.00090 * 3 2 1 30 30 H 1.09004 * 109.47107 * 269.99812 * 5 4 2 31 31 H 1.09004 * 109.47450 * 29.99532 * 5 4 2 32 32 H 1.09001 * 109.47376 * 149.99788 * 5 4 2 33 33 H 1.09004 * 109.47046 * 335.00453 * 6 4 2 34 34 H 1.08998 * 109.47194 * 215.00304 * 6 4 2 35 35 H 0.96997 * 119.99638 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.47149 * 60.00719 * 10 9 7 37 37 H 1.08998 * 109.47686 * 300.00064 * 10 9 7 38 38 H 0.96703 * 113.99848 * 46.79570 * 12 11 10 39 39 H 1.09007 * 113.46615 * 105.56627 * 13 11 10 40 40 H 1.08998 * 113.52551 * 335.13818 * 13 11 10 41 41 H 0.96999 * 119.99710 * 5.38439 * 18 17 15 42 42 H 1.09001 * 113.46851 * 87.44175 * 23 14 13 43 43 H 1.09001 * 113.47037 * 217.87480 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1620 -1.1344 -0.0005 5 6 3.6690 -1.1344 -0.0011 6 6 1.4086 -2.4396 -0.0005 7 6 1.2642 -2.9362 -1.4160 8 8 1.7270 -2.2934 -2.3344 9 7 0.6197 -4.0942 -1.6614 10 6 0.4789 -4.5767 -3.0375 11 6 -0.2860 -5.9018 -3.0375 12 8 0.1878 -6.8310 -2.0606 13 6 -0.4954 -6.5076 -4.4322 14 7 -1.8546 -6.8782 -4.0102 15 6 -2.7607 -7.8489 -4.3450 16 1 -2.4760 -8.6447 -5.0174 17 6 -4.0451 -7.8101 -3.8200 18 7 -4.9594 -8.6513 -4.2546 19 14 -4.4782 -6.5588 -2.5024 20 1 -5.9293 -6.6426 -2.1979 21 1 -3.6970 -6.8448 -1.2723 22 1 -4.1527 -5.1942 -2.9895 23 6 -1.8149 -5.7439 -3.0752 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 2.8871 1.3630 -0.8899 28 1 1.5521 2.1336 0.0005 29 1 2.8871 1.3629 0.8901 30 1 4.0319 -1.1342 -1.0289 31 1 4.0326 -0.2445 0.5127 32 1 4.0326 -2.0245 0.5124 33 1 0.4204 -2.2886 0.4342 34 1 1.9561 -3.1752 0.5886 35 1 0.2492 -4.6081 -0.9269 36 1 1.4668 -4.7279 -3.4724 37 1 -0.0686 -3.8407 -3.6263 38 1 0.3190 -6.4464 -1.1831 39 1 0.1458 -7.3658 -4.6335 40 1 -0.4760 -5.7698 -5.2344 41 1 -4.7168 -9.3486 -4.8838 42 1 -2.1434 -4.8040 -3.5188 43 1 -2.2979 -5.9513 -2.1203 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699916462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:27 Heat of formation + Delta-G solvation = -12.630303 kcal Electronic energy + Delta-G solvation = -22557.200836 eV Core-core repulsion = 19218.985935 eV Total energy + Delta-G solvation = -3338.214901 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.24100 -39.19189 -37.27251 -35.28290 -34.13355 -32.30402 -31.40697 -30.02687 -28.80875 -26.98923 -25.63711 -25.55446 -23.93720 -21.52950 -20.73571 -19.65781 -18.04334 -17.41179 -17.13367 -16.40847 -16.01966 -15.83739 -15.12712 -14.76227 -14.57953 -14.46808 -14.06998 -13.83013 -13.47822 -13.25951 -13.14154 -12.91061 -12.69959 -12.56441 -12.34300 -12.28218 -12.12353 -11.86404 -11.64294 -11.50529 -11.04924 -10.93479 -10.56650 -10.33738 -10.11392 -9.94776 -9.24707 -9.22502 -8.94186 -8.88230 -8.66331 -7.17672 -6.33268 -3.23499 1.87411 2.56974 3.13614 3.34936 3.39968 3.61291 4.22268 4.42326 4.54535 4.57028 4.66111 4.71235 4.82495 4.88584 5.02991 5.06865 5.20137 5.26051 5.33926 5.44945 5.47529 5.48744 5.53112 5.65917 5.69314 5.72697 5.77217 5.83311 5.88078 6.03119 6.09652 6.13595 6.30329 6.33397 6.43662 6.50919 6.78600 7.05817 7.33612 7.82569 8.13764 8.22570 8.96389 9.48002 10.32263 11.19726 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027434 B = 0.003711 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.390559 B = 7544.037704 C = 8124.471211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.108 4.108 7 C 0.516 3.484 8 O -0.531 6.531 9 N -0.731 5.731 10 C 0.107 3.893 11 C 0.071 3.929 12 O -0.519 6.519 13 C 0.139 3.861 14 N -0.618 5.618 15 C -0.300 4.300 16 H 0.084 0.916 17 C -0.026 4.026 18 N -0.935 5.935 19 Si 1.073 2.927 20 H -0.295 1.295 21 H -0.294 1.294 22 H -0.288 1.288 23 C 0.077 3.923 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.396 0.604 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.362 0.638 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.261 0.739 42 H 0.054 0.946 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.313 17.137 12.115 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.126 4.126 3 C -0.169 4.169 4 C -0.118 4.118 5 C -0.170 4.170 6 C -0.148 4.148 7 C 0.302 3.698 8 O -0.407 6.407 9 N -0.385 5.385 10 C -0.018 4.018 11 C 0.028 3.972 12 O -0.322 6.322 13 C 0.012 3.988 14 N -0.345 5.345 15 C -0.426 4.426 16 H 0.102 0.898 17 C -0.225 4.225 18 N -0.577 5.577 19 Si 0.906 3.094 20 H -0.222 1.222 21 H -0.223 1.223 22 H -0.215 1.215 23 C -0.049 4.049 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.231 0.769 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.209 0.791 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.164 17.543 11.741 25.421 hybrid contribution 1.028 -0.585 -0.187 1.197 sum 15.192 16.958 11.554 25.531 Atomic orbital electron populations 1.20892 0.92396 1.02667 1.01703 1.21374 0.95548 0.94641 1.01063 1.20786 0.99757 0.94558 1.01818 1.20754 0.95487 0.92657 1.02927 1.20791 0.92004 1.01875 1.02327 1.20792 1.02560 0.96920 0.94501 1.20586 0.77582 0.80301 0.91328 1.90707 1.47539 1.56110 1.46359 1.46015 1.58629 1.24290 1.09616 1.21923 1.01401 0.95418 0.83079 1.23304 0.93497 0.87238 0.93187 1.86684 1.87764 1.36755 1.21001 1.22338 0.88132 0.97389 0.90958 1.45701 1.15088 1.29407 1.44331 1.20128 0.91960 1.02822 1.27692 0.89823 1.25731 0.90674 1.03800 1.02259 1.70916 1.32558 1.19529 1.34723 0.83652 0.74949 0.75170 0.75583 1.22194 1.22279 1.21520 1.23492 0.93126 0.92772 0.95491 0.91492 0.91824 0.91905 0.91554 0.92250 0.91682 0.91107 0.91811 0.92367 0.88039 0.88333 0.76895 0.90604 0.90046 0.79145 0.92495 0.92668 0.92888 0.92890 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.07 36.00 0.33 -0.72 16 2 C -0.13 -1.18 6.05 -101.07 -0.61 -1.80 16 3 C -0.11 -0.87 8.76 36.01 0.32 -0.56 16 4 C -0.12 -1.13 4.55 -101.07 -0.46 -1.59 16 5 C -0.11 -0.98 9.54 36.00 0.34 -0.63 16 6 C -0.11 -0.94 5.19 -29.03 -0.15 -1.09 16 7 C 0.52 6.18 7.60 -10.98 -0.08 6.10 16 8 O -0.53 -8.43 16.03 5.56 0.09 -8.34 16 9 N -0.73 -8.18 5.34 -60.29 -0.32 -8.50 16 10 C 0.11 1.46 5.43 -4.04 -0.02 1.44 16 11 C 0.07 1.19 1.74 -89.97 -0.16 1.03 16 12 O -0.52 -8.64 13.56 -35.23 -0.48 -9.12 16 13 C 0.14 2.76 8.10 -8.52 -0.07 2.69 16 14 N -0.62 -15.40 3.69 -184.62 -0.68 -16.09 16 15 C -0.30 -8.82 11.08 -15.06 -0.17 -8.99 16 16 H 0.08 2.59 8.05 -52.48 -0.42 2.17 16 17 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 18 N -0.93 -29.86 13.70 55.49 0.76 -29.10 16 19 Si 1.07 26.86 25.13 -169.99 -4.27 22.58 16 20 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 21 H -0.29 -6.92 6.64 56.52 0.38 -6.55 16 22 H -0.29 -6.66 6.13 56.52 0.35 -6.32 16 23 C 0.08 1.59 5.14 -8.39 -0.04 1.55 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 26 H 0.06 0.60 6.27 -51.93 -0.33 0.28 16 27 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.06 0.41 7.94 -51.93 -0.41 0.00 16 29 H 0.06 0.43 7.37 -51.92 -0.38 0.04 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.46 6.44 -51.93 -0.33 0.13 16 32 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.10 0.74 6.26 -51.93 -0.33 0.41 16 34 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.40 3.43 6.95 -40.82 -0.28 3.14 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.17 7.89 -51.93 -0.41 0.76 16 38 H 0.36 4.16 7.21 45.56 0.33 4.49 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.26 8.23 8.73 -40.82 -0.36 7.88 16 42 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 43 H 0.06 1.16 4.67 -51.93 -0.24 0.92 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -36.33 343.34 -6.83 -43.16 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.22 Total: 3.69 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.87 Total: -3.45 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.24 Total: -53.69 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.39 Total: -17.46 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -4.27 Total: 22.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.33 -6.83 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699916462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.527 kcal (2) G-P(sol) polarization free energy of solvation -36.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds