Wall clock time and date at job start Tue Mar 31 2020 05:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50703 * 119.99779 * 2 1 4 4 C 1.30997 * 120.00415 * 180.02562 * 2 1 3 5 5 C 1.50696 * 120.00415 * 179.97438 * 4 2 1 6 6 C 1.50703 * 119.99806 * 359.97438 * 4 2 1 7 7 C 1.50700 * 109.46962 * 95.00116 * 6 4 2 8 8 O 1.21280 * 120.00210 * 359.97438 * 7 6 4 9 9 N 1.34781 * 120.00044 * 180.02562 * 7 6 4 10 10 C 1.46494 * 119.99862 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46928 * 179.97438 * 10 9 7 12 12 O 1.42899 * 113.41348 * 313.20372 * 11 10 9 13 13 C 1.53496 * 114.20479 * 180.02562 * 11 10 9 14 14 N 1.47066 * 87.98324 * 220.34620 * 13 11 10 15 15 C 1.36944 * 136.05683 * 207.08528 * 14 13 11 16 16 H 1.08004 * 119.99874 * 6.90177 * 15 14 13 17 17 C 1.38808 * 119.99887 * 186.89762 * 15 14 13 18 18 N 1.31620 * 119.99758 * 172.36849 * 17 15 14 19 19 Si 1.86803 * 120.00116 * 352.64805 * 17 15 14 20 20 H 1.48502 * 109.46980 * 175.03997 * 19 17 15 21 21 H 1.48501 * 109.46832 * 295.03703 * 19 17 15 22 22 H 1.48495 * 109.47214 * 55.03946 * 19 17 15 23 23 C 1.47058 * 87.88471 * 27.34220 * 14 13 11 24 24 H 1.09004 * 109.47107 * 269.99876 * 1 2 3 25 25 H 1.09001 * 109.47376 * 29.99900 * 1 2 3 26 26 H 1.08994 * 109.47329 * 150.00068 * 1 2 3 27 27 H 1.08996 * 109.47466 * 240.00013 * 3 2 1 28 28 H 1.08993 * 109.47181 * 0.02562 * 3 2 1 29 29 H 1.09008 * 109.46951 * 120.00090 * 3 2 1 30 30 H 1.09004 * 109.47107 * 269.99812 * 5 4 2 31 31 H 1.09004 * 109.47450 * 29.99532 * 5 4 2 32 32 H 1.09001 * 109.47376 * 149.99788 * 5 4 2 33 33 H 1.09004 * 109.47046 * 335.00453 * 6 4 2 34 34 H 1.08998 * 109.47194 * 215.00304 * 6 4 2 35 35 H 0.96997 * 119.99638 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.47149 * 60.00719 * 10 9 7 37 37 H 1.08998 * 109.47686 * 300.00064 * 10 9 7 38 38 H 0.96703 * 113.99848 * 46.79570 * 12 11 10 39 39 H 1.09007 * 113.46615 * 105.56627 * 13 11 10 40 40 H 1.08998 * 113.52551 * 335.13818 * 13 11 10 41 41 H 0.96999 * 119.99710 * 5.38439 * 18 17 15 42 42 H 1.09001 * 113.46851 * 87.44175 * 23 14 13 43 43 H 1.09001 * 113.47037 * 217.87480 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1620 -1.1344 -0.0005 5 6 3.6690 -1.1344 -0.0011 6 6 1.4086 -2.4396 -0.0005 7 6 1.2642 -2.9362 -1.4160 8 8 1.7270 -2.2934 -2.3344 9 7 0.6197 -4.0942 -1.6614 10 6 0.4789 -4.5767 -3.0375 11 6 -0.2860 -5.9018 -3.0375 12 8 0.1878 -6.8310 -2.0606 13 6 -0.4954 -6.5076 -4.4322 14 7 -1.8546 -6.8782 -4.0102 15 6 -2.7607 -7.8489 -4.3450 16 1 -2.4760 -8.6447 -5.0174 17 6 -4.0451 -7.8101 -3.8200 18 7 -4.9594 -8.6513 -4.2546 19 14 -4.4782 -6.5588 -2.5024 20 1 -5.9293 -6.6426 -2.1979 21 1 -3.6970 -6.8448 -1.2723 22 1 -4.1527 -5.1942 -2.9895 23 6 -1.8149 -5.7439 -3.0752 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 2.8871 1.3630 -0.8899 28 1 1.5521 2.1336 0.0005 29 1 2.8871 1.3629 0.8901 30 1 4.0319 -1.1342 -1.0289 31 1 4.0326 -0.2445 0.5127 32 1 4.0326 -2.0245 0.5124 33 1 0.4204 -2.2886 0.4342 34 1 1.9561 -3.1752 0.5886 35 1 0.2492 -4.6081 -0.9269 36 1 1.4668 -4.7279 -3.4724 37 1 -0.0686 -3.8407 -3.6263 38 1 0.3190 -6.4464 -1.1831 39 1 0.1458 -7.3658 -4.6335 40 1 -0.4760 -5.7698 -5.2344 41 1 -4.7168 -9.3486 -4.8838 42 1 -2.1434 -4.8040 -3.5188 43 1 -2.2979 -5.9513 -2.1203 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699916462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:26 Heat of formation + Delta-G solvation = -41.652741 kcal Electronic energy + Delta-G solvation = -22558.459343 eV Core-core repulsion = 19218.985935 eV Total energy + Delta-G solvation = -3339.473408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40558 -40.43643 -38.01812 -36.74679 -35.23512 -34.44447 -32.13880 -30.91282 -30.12964 -28.04937 -27.18148 -26.81194 -24.68318 -23.24587 -21.68713 -21.23080 -19.75336 -18.82820 -17.90073 -17.75333 -16.98638 -16.81456 -16.49582 -15.88871 -15.77910 -15.58231 -15.19113 -15.15964 -15.00817 -14.54062 -14.38798 -14.05974 -13.58209 -13.55209 -13.31721 -13.16536 -12.97652 -12.88598 -12.79188 -12.54986 -12.39199 -12.14204 -11.90871 -11.78404 -11.56033 -11.33927 -11.04159 -10.95077 -10.63031 -10.13217 -9.33334 -9.23205 -8.68955 -5.49632 1.18400 1.34613 1.47324 1.66901 1.68074 2.22539 2.53462 2.86592 2.95097 3.16972 3.30767 3.75590 3.77590 3.99927 4.09509 4.24602 4.25774 4.45493 4.47468 4.55459 4.62169 4.63508 4.67541 4.73819 4.77546 4.78085 4.83562 4.88701 5.01015 5.04758 5.08425 5.11925 5.14501 5.17888 5.24278 5.32953 5.79828 5.91402 6.13665 6.48928 6.66488 6.75876 7.25885 7.28887 8.21886 8.86972 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027434 B = 0.003711 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.390559 B = 7544.037704 C = 8124.471211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.136 4.136 3 C -0.113 4.113 4 C -0.135 4.135 5 C -0.112 4.112 6 C -0.103 4.103 7 C 0.517 3.483 8 O -0.574 6.574 9 N -0.722 5.722 10 C 0.121 3.879 11 C 0.107 3.893 12 O -0.536 6.536 13 C 0.127 3.873 14 N -0.654 5.654 15 C -0.291 4.291 16 H 0.046 0.954 17 C -0.089 4.089 18 N -0.971 5.971 19 Si 1.113 2.887 20 H -0.305 1.305 21 H -0.269 1.269 22 H -0.257 1.257 23 C 0.069 3.931 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.412 0.588 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.387 0.613 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.245 0.755 42 H 0.067 0.933 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.599 19.399 14.618 29.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.136 4.136 3 C -0.170 4.170 4 C -0.136 4.136 5 C -0.169 4.169 6 C -0.142 4.142 7 C 0.305 3.695 8 O -0.452 6.452 9 N -0.377 5.377 10 C -0.004 4.004 11 C 0.064 3.936 12 O -0.343 6.343 13 C 0.001 3.999 14 N -0.382 5.382 15 C -0.419 4.419 16 H 0.064 0.936 17 C -0.280 4.280 18 N -0.616 5.616 19 Si 0.939 3.061 20 H -0.233 1.233 21 H -0.195 1.195 22 H -0.182 1.182 23 C -0.056 4.056 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.249 0.751 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.237 0.763 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.515 19.820 14.278 28.938 hybrid contribution 0.747 -1.318 -1.026 1.830 sum 16.262 18.502 13.251 27.971 Atomic orbital electron populations 1.20919 0.92022 1.02191 1.02612 1.21665 0.96114 0.95255 1.00579 1.20810 0.99913 0.94248 1.02022 1.20980 0.95985 0.93205 1.03404 1.20784 0.91740 1.03034 1.01334 1.20850 1.03904 0.97058 0.92421 1.21154 0.76422 0.79685 0.92250 1.90699 1.49314 1.57321 1.47914 1.45889 1.58485 1.24361 1.08983 1.21593 1.00867 0.93283 0.84666 1.22696 0.91509 0.88078 0.91323 1.86644 1.87416 1.37633 1.22600 1.22639 0.85531 0.97861 0.93830 1.45776 1.16176 1.29984 1.46295 1.19978 0.93071 1.02948 1.25863 0.93568 1.27219 0.90953 1.05412 1.04380 1.71031 1.33742 1.20714 1.36149 0.83226 0.74423 0.74472 0.74027 1.23299 1.19504 1.18202 1.23757 0.95958 0.91426 0.94436 0.89855 0.91896 0.92776 0.92365 0.91578 0.90411 0.93094 0.90729 0.91263 0.86251 0.85721 0.75118 0.90250 0.90241 0.76299 0.93334 0.90372 0.94605 0.91504 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.07 71.23 0.65 -1.15 16 2 C -0.14 -2.24 6.05 -16.48 -0.10 -2.34 16 3 C -0.11 -1.55 8.76 71.24 0.62 -0.93 16 4 C -0.14 -2.26 4.55 -16.48 -0.07 -2.33 16 5 C -0.11 -1.71 9.54 71.23 0.68 -1.03 16 6 C -0.10 -1.42 5.19 29.10 0.15 -1.27 16 7 C 0.52 10.79 7.60 87.66 0.67 11.45 16 8 O -0.57 -17.08 16.03 -3.03 -0.05 -17.13 16 9 N -0.72 -13.38 5.34 -463.06 -2.47 -15.85 16 10 C 0.12 2.92 5.43 86.38 0.47 3.39 16 11 C 0.11 3.28 1.74 -10.37 -0.02 3.26 16 12 O -0.54 -16.10 13.56 -148.98 -2.02 -18.12 16 13 C 0.13 4.86 8.10 83.17 0.67 5.54 16 14 N -0.65 -32.01 3.69 -738.49 -2.73 -34.74 16 15 C -0.29 -17.48 11.08 84.03 0.93 -16.55 16 16 H 0.05 3.02 8.05 -2.91 -0.02 3.00 16 17 C -0.09 -5.41 5.50 84.86 0.47 -4.94 16 18 N -0.97 -64.04 13.70 21.65 0.30 -63.74 16 19 Si 1.11 53.07 25.13 68.60 1.72 54.80 16 20 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 21 H -0.27 -11.54 6.64 99.48 0.66 -10.88 16 22 H -0.26 -10.82 6.13 99.48 0.61 -10.21 16 23 C 0.07 2.64 5.14 83.26 0.43 3.06 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 0.92 8.05 -2.39 -0.02 0.90 16 26 H 0.05 0.89 6.27 -2.39 -0.01 0.87 16 27 H 0.06 0.89 8.08 -2.39 -0.02 0.87 16 28 H 0.07 0.79 7.94 -2.39 -0.02 0.77 16 29 H 0.08 0.84 7.37 -2.38 -0.02 0.83 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.92 6.44 -2.38 -0.02 0.91 16 32 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 33 H 0.12 1.24 6.26 -2.39 -0.01 1.22 16 34 H 0.12 1.07 8.10 -2.39 -0.02 1.05 16 35 H 0.41 5.19 6.95 -92.71 -0.64 4.55 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.02 7.89 -2.39 -0.02 2.00 16 38 H 0.39 7.23 7.21 -74.06 -0.53 6.69 16 39 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.08 2.65 8.10 -2.39 -0.02 2.64 16 41 H 0.24 16.27 8.73 -92.71 -0.81 15.47 16 42 H 0.07 2.41 7.50 -2.39 -0.02 2.39 16 43 H 0.06 2.12 4.67 -2.39 -0.01 2.11 16 Total: -1.00 -81.11 343.34 -0.05 -81.16 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -0.34 Total: 17.48 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 5.54 Total: -3.85 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -4.91 Total: -114.33 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -2.07 Total: -35.25 kcal Atomic # 14 Polarization: 53.07 SS G_CDS: 1.72 Total: 54.80 kcal Total: -81.11 -0.05 -81.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699916462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.503 kcal (2) G-P(sol) polarization free energy of solvation -81.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds