Wall clock time and date at job start Tue Mar 31 2020 06:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46894 * 2 1 4 4 N 1.46503 * 109.46665 * 180.02562 * 3 2 1 5 5 C 1.37101 * 120.00268 * 269.99680 * 4 3 2 6 6 H 1.07996 * 120.00010 * 140.84647 * 5 4 3 7 7 C 1.38947 * 119.99822 * 320.86028 * 5 4 3 8 8 N 1.31411 * 120.00059 * 342.72239 * 7 5 4 9 9 Si 1.86798 * 120.00114 * 162.72809 * 7 5 4 10 10 H 1.48507 * 109.47277 * 59.99316 * 9 7 5 11 11 H 1.48500 * 109.47434 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47257 * 299.99707 * 9 7 5 13 13 C 1.34781 * 119.99951 * 90.00743 * 4 3 2 14 14 O 1.21292 * 120.00059 * 5.45771 * 13 4 3 15 15 C 1.50697 * 119.99662 * 185.46834 * 13 4 3 16 16 N 1.46499 * 109.47033 * 174.16890 * 15 13 4 17 17 C 1.47191 * 119.78960 * 269.99530 * 16 15 13 18 18 C 1.52982 * 108.66612 * 108.04040 * 17 16 15 19 19 C 1.51781 * 110.88278 * 86.46780 * 18 17 16 20 20 C 1.51790 * 113.81204 * 293.00037 * 19 18 17 21 21 C 1.53059 * 110.74310 * 66.80458 * 20 19 18 22 22 C 1.33378 * 119.78657 * 89.99537 * 16 15 13 23 23 O 1.21280 * 119.88937 * 0.56135 * 22 16 15 24 24 H 1.08997 * 109.47639 * 59.99629 * 1 2 3 25 25 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46793 * 299.99314 * 1 2 3 27 27 H 1.09007 * 109.46686 * 240.00260 * 2 1 3 28 28 H 1.09000 * 109.47586 * 120.00896 * 2 1 3 29 29 H 1.08993 * 109.47156 * 60.00643 * 3 2 1 30 30 H 1.09003 * 109.47328 * 300.00171 * 3 2 1 31 31 H 0.97004 * 120.00139 * 185.03111 * 8 7 5 32 32 H 1.08992 * 109.47858 * 54.16524 * 15 13 4 33 33 H 1.09009 * 109.47178 * 294.16345 * 15 13 4 34 34 H 1.08999 * 109.60395 * 348.28859 * 17 16 15 35 35 H 1.08999 * 109.60770 * 227.79927 * 17 16 15 36 36 H 1.09006 * 109.19479 * 326.11456 * 18 17 16 37 37 H 1.08997 * 109.16106 * 206.81059 * 18 17 16 38 38 H 1.09001 * 108.61571 * 171.87540 * 19 18 17 39 39 H 1.09002 * 108.61112 * 54.12147 * 19 18 17 40 40 H 1.09001 * 109.22088 * 306.47572 * 20 19 18 41 41 H 1.09000 * 109.21917 * 187.13216 * 20 19 18 42 42 H 1.09002 * 109.63329 * 155.38308 * 21 20 19 43 43 H 1.09002 * 109.79618 * 34.88830 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.4423 1.1864 6 1 5.0892 0.8517 1.2909 7 6 3.7306 2.2018 2.2550 8 7 2.8619 3.1661 2.0496 9 14 4.3467 1.8522 3.9834 10 1 5.8209 2.0262 4.0282 11 1 3.7082 2.7949 4.9367 12 1 4.0014 0.4576 4.3594 13 6 4.1784 1.4427 -1.1681 14 8 3.5756 1.5430 -2.2159 15 6 5.6802 1.3183 -1.1717 16 7 6.1575 1.2042 -2.5521 17 6 6.2906 -0.1240 -3.1723 18 6 5.1822 -0.2917 -4.2132 19 6 5.6088 0.2771 -5.5542 20 6 5.7787 1.7855 -5.5540 21 6 6.9566 2.1982 -4.6682 22 6 6.4685 2.3045 -3.2387 23 8 6.3649 3.3933 -2.7148 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5140 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 2.5957 3.7433 2.7824 32 1 5.9726 0.4302 -0.6116 33 1 6.1191 2.2016 -0.7074 34 1 6.1947 -0.8956 -2.4084 35 1 7.2633 -0.2053 -3.6574 36 1 4.2877 0.2291 -3.8713 37 1 4.9573 -1.3519 -4.3288 38 1 4.8588 0.0114 -6.2993 39 1 6.5561 -0.1798 -5.8404 40 1 4.8668 2.2492 -5.1778 41 1 5.9595 2.1263 -6.5735 42 1 7.3411 3.1638 -4.9966 43 1 7.7460 1.4492 -4.7310 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064308603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:05 Heat of formation + Delta-G solvation = -80.545733 kcal Electronic energy + Delta-G solvation = -23849.082266 eV Core-core repulsion = 20507.922332 eV Total energy + Delta-G solvation = -3341.159935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06955 -38.22923 -36.29630 -35.14456 -34.02902 -32.78317 -31.26217 -30.76687 -28.46045 -26.11392 -25.27864 -24.14989 -23.43878 -20.80225 -20.39701 -19.26714 -18.42969 -17.09141 -16.84821 -16.11970 -15.73696 -14.84695 -14.46661 -14.33768 -14.00476 -13.86974 -13.76224 -13.46606 -13.31870 -13.18132 -12.62259 -12.45105 -12.21570 -11.93620 -11.56900 -11.46429 -11.33863 -11.25286 -10.97843 -10.95043 -10.66297 -10.62445 -10.51319 -10.43506 -10.36327 -10.22779 -9.72894 -9.20482 -9.11786 -8.78068 -7.93688 -7.40507 -6.32755 -4.07918 3.12580 3.14224 3.21079 3.21990 3.47704 3.92241 4.14542 4.75063 4.87433 4.90498 4.97321 4.98207 5.03269 5.44084 5.48420 5.56646 5.62364 5.77322 5.79604 5.80356 5.85150 5.98647 6.02612 6.08197 6.12480 6.21114 6.29409 6.37804 6.42882 6.51045 6.55899 6.70191 6.72168 6.81708 6.90597 7.15906 7.36961 7.54699 7.91258 8.02622 8.38538 8.72427 9.09485 9.55121 9.98295 10.68659 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.005790 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.618859 B = 4835.141674 C = 5655.249445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.113 3.887 4 N -0.439 5.439 5 C -0.346 4.346 6 H 0.087 0.913 7 C 0.047 3.953 8 N -0.861 5.861 9 Si 0.916 3.084 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.463 3.537 14 O -0.594 6.594 15 C 0.111 3.889 16 N -0.588 5.588 17 C 0.117 3.883 18 C -0.154 4.154 19 C -0.113 4.113 20 C -0.113 4.113 21 C -0.134 4.134 22 C 0.518 3.482 23 O -0.547 6.547 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.052 0.948 31 H 0.271 0.729 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.088 -8.309 -8.517 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.010 4.010 4 N -0.158 5.158 5 C -0.474 4.474 6 H 0.104 0.896 7 C -0.160 4.160 8 N -0.497 5.497 9 Si 0.743 3.257 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.250 3.750 14 O -0.480 6.480 15 C -0.015 4.015 16 N -0.320 5.320 17 C -0.006 4.006 18 C -0.192 4.192 19 C -0.150 4.150 20 C -0.151 4.151 21 C -0.174 4.174 22 C 0.305 3.695 23 O -0.425 6.425 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.568 -7.569 -8.603 12.336 hybrid contribution 0.236 -0.215 1.042 1.090 sum 4.804 -7.783 -7.561 11.867 Atomic orbital electron populations 1.21656 0.96662 1.00332 1.01426 1.21820 0.94624 0.99556 1.00977 1.21433 0.81669 0.94317 1.03612 1.43375 1.04623 1.63472 1.04298 1.19323 1.10938 1.28298 0.88843 0.89562 1.25403 0.96342 0.94012 1.00221 1.69808 1.31709 1.15111 1.33051 0.86178 0.79143 0.78422 0.81993 1.19707 1.20885 1.19800 1.20731 0.89382 0.80416 0.84436 1.90457 1.70024 1.55386 1.32091 1.21222 0.94222 1.04351 0.81677 1.47471 1.64239 1.06365 1.13907 1.21731 0.98326 0.84235 0.96290 1.21962 1.01247 1.01284 0.94747 1.21093 1.01053 0.95221 0.97665 1.21202 0.98493 0.96443 0.98971 1.21951 0.99150 1.03744 0.92558 1.20348 0.77285 0.83839 0.88002 1.90718 1.54267 1.27009 1.70494 0.93209 0.93710 0.92948 0.93402 0.92318 0.87657 0.92913 0.91852 0.89145 0.87491 0.90144 0.91186 0.88093 0.91622 0.92198 0.92643 0.90864 0.91364 0.89092 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 37.16 0.37 -2.06 16 2 C -0.13 -2.67 6.26 -26.73 -0.17 -2.84 16 3 C 0.11 2.75 5.04 -4.04 -0.02 2.73 16 4 N -0.44 -11.12 2.51 -114.81 -0.29 -11.40 16 5 C -0.35 -8.72 8.67 -14.93 -0.13 -8.85 16 6 H 0.09 2.02 6.96 -52.49 -0.37 1.66 16 7 C 0.05 1.18 5.05 -17.47 -0.09 1.09 16 8 N -0.86 -23.23 11.31 55.50 0.63 -22.60 16 9 Si 0.92 19.43 29.59 -169.99 -5.03 14.40 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.46 11.36 7.68 -10.98 -0.08 11.28 16 14 O -0.59 -15.56 13.95 5.55 0.08 -15.48 16 15 C 0.11 2.29 4.60 -5.20 -0.02 2.27 16 16 N -0.59 -10.55 1.98 -174.61 -0.34 -10.90 16 17 C 0.12 1.57 5.91 -3.67 -0.02 1.55 16 18 C -0.15 -2.09 5.73 -27.36 -0.16 -2.25 16 19 C -0.11 -1.29 5.27 -27.96 -0.15 -1.44 16 20 C -0.11 -1.47 5.67 -27.31 -0.15 -1.62 16 21 C -0.13 -1.83 5.56 -27.50 -0.15 -1.98 16 22 C 0.52 9.89 6.73 -11.25 -0.08 9.81 16 23 O -0.55 -13.18 16.60 5.56 0.09 -13.08 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.11 2.74 5.47 -51.93 -0.28 2.45 16 30 H 0.05 1.36 7.35 -51.93 -0.38 0.97 16 31 H 0.27 6.93 8.32 -40.82 -0.34 6.59 16 32 H 0.09 1.63 7.25 -51.93 -0.38 1.25 16 33 H 0.11 2.45 7.37 -51.92 -0.38 2.06 16 34 H 0.08 0.99 7.77 -51.93 -0.40 0.59 16 35 H 0.07 0.74 6.71 -51.93 -0.35 0.39 16 36 H 0.10 1.84 5.94 -51.93 -0.31 1.53 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.51 7.89 -51.93 -0.41 0.10 16 40 H 0.07 1.21 7.86 -51.93 -0.41 0.80 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.09 1.19 8.13 -51.93 -0.42 0.77 16 43 H 0.08 0.90 6.79 -51.93 -0.35 0.55 16 LS Contribution 338.30 15.07 5.10 5.10 Total: -1.00 -31.90 338.30 -7.58 -39.48 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.96 Total: 6.79 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -0.85 Total: 7.70 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.01 Total: -44.90 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: 0.17 Total: -28.57 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.90 -7.58 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064308603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.066 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds