Wall clock time and date at job start Tue Mar 31 2020 06:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46894 * 2 1 4 4 N 1.46503 * 109.46665 * 180.02562 * 3 2 1 5 5 C 1.37101 * 120.00268 * 269.99680 * 4 3 2 6 6 H 1.07996 * 120.00010 * 140.84647 * 5 4 3 7 7 C 1.38947 * 119.99822 * 320.86028 * 5 4 3 8 8 N 1.31411 * 120.00059 * 342.72239 * 7 5 4 9 9 Si 1.86798 * 120.00114 * 162.72809 * 7 5 4 10 10 H 1.48507 * 109.47277 * 59.99316 * 9 7 5 11 11 H 1.48500 * 109.47434 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47257 * 299.99707 * 9 7 5 13 13 C 1.34781 * 119.99951 * 90.00743 * 4 3 2 14 14 O 1.21292 * 120.00059 * 5.45771 * 13 4 3 15 15 C 1.50697 * 119.99662 * 185.46834 * 13 4 3 16 16 N 1.46499 * 109.47033 * 174.16890 * 15 13 4 17 17 C 1.47191 * 119.78960 * 269.99530 * 16 15 13 18 18 C 1.52982 * 108.66612 * 108.04040 * 17 16 15 19 19 C 1.51781 * 110.88278 * 86.46780 * 18 17 16 20 20 C 1.51790 * 113.81204 * 293.00037 * 19 18 17 21 21 C 1.53059 * 110.74310 * 66.80458 * 20 19 18 22 22 C 1.33378 * 119.78657 * 89.99537 * 16 15 13 23 23 O 1.21280 * 119.88937 * 0.56135 * 22 16 15 24 24 H 1.08997 * 109.47639 * 59.99629 * 1 2 3 25 25 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46793 * 299.99314 * 1 2 3 27 27 H 1.09007 * 109.46686 * 240.00260 * 2 1 3 28 28 H 1.09000 * 109.47586 * 120.00896 * 2 1 3 29 29 H 1.08993 * 109.47156 * 60.00643 * 3 2 1 30 30 H 1.09003 * 109.47328 * 300.00171 * 3 2 1 31 31 H 0.97004 * 120.00139 * 185.03111 * 8 7 5 32 32 H 1.08992 * 109.47858 * 54.16524 * 15 13 4 33 33 H 1.09009 * 109.47178 * 294.16345 * 15 13 4 34 34 H 1.08999 * 109.60395 * 348.28859 * 17 16 15 35 35 H 1.08999 * 109.60770 * 227.79927 * 17 16 15 36 36 H 1.09006 * 109.19479 * 326.11456 * 18 17 16 37 37 H 1.08997 * 109.16106 * 206.81059 * 18 17 16 38 38 H 1.09001 * 108.61571 * 171.87540 * 19 18 17 39 39 H 1.09002 * 108.61112 * 54.12147 * 19 18 17 40 40 H 1.09001 * 109.22088 * 306.47572 * 20 19 18 41 41 H 1.09000 * 109.21917 * 187.13216 * 20 19 18 42 42 H 1.09002 * 109.63329 * 155.38308 * 21 20 19 43 43 H 1.09002 * 109.79618 * 34.88830 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.4423 1.1864 6 1 5.0892 0.8517 1.2909 7 6 3.7306 2.2018 2.2550 8 7 2.8619 3.1661 2.0496 9 14 4.3467 1.8522 3.9834 10 1 5.8209 2.0262 4.0282 11 1 3.7082 2.7949 4.9367 12 1 4.0014 0.4576 4.3594 13 6 4.1784 1.4427 -1.1681 14 8 3.5756 1.5430 -2.2159 15 6 5.6802 1.3183 -1.1717 16 7 6.1575 1.2042 -2.5521 17 6 6.2906 -0.1240 -3.1723 18 6 5.1822 -0.2917 -4.2132 19 6 5.6088 0.2771 -5.5542 20 6 5.7787 1.7855 -5.5540 21 6 6.9566 2.1982 -4.6682 22 6 6.4685 2.3045 -3.2387 23 8 6.3649 3.3933 -2.7148 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5140 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 2.5957 3.7433 2.7824 32 1 5.9726 0.4302 -0.6116 33 1 6.1191 2.2016 -0.7074 34 1 6.1947 -0.8956 -2.4084 35 1 7.2633 -0.2053 -3.6574 36 1 4.2877 0.2291 -3.8713 37 1 4.9573 -1.3519 -4.3288 38 1 4.8588 0.0114 -6.2993 39 1 6.5561 -0.1798 -5.8404 40 1 4.8668 2.2492 -5.1778 41 1 5.9595 2.1263 -6.5735 42 1 7.3411 3.1638 -4.9966 43 1 7.7460 1.4492 -4.7310 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064308603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:05 Heat of formation + Delta-G solvation = -100.069189 kcal Electronic energy + Delta-G solvation = -23849.928867 eV Core-core repulsion = 20507.922332 eV Total energy + Delta-G solvation = -3342.006535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54746 -40.07619 -37.65718 -36.97689 -35.45525 -34.51424 -33.18166 -31.95153 -29.95044 -27.68273 -26.92457 -25.79297 -24.69999 -22.48411 -21.42942 -21.14984 -19.90560 -18.83330 -18.22185 -17.92415 -17.31483 -16.54985 -16.09598 -15.96595 -15.70645 -15.41947 -15.10573 -14.87796 -14.46138 -14.41134 -14.21747 -14.08359 -13.55641 -13.26182 -13.25317 -13.10657 -12.98859 -12.79567 -12.60612 -12.40596 -12.29978 -12.10602 -11.99733 -11.68698 -11.57785 -11.52054 -11.42383 -11.02189 -10.69498 -10.55872 -9.59017 -9.37728 -8.27405 -6.09360 1.43684 1.48065 1.57094 1.67126 2.01370 2.10461 2.35009 3.03209 3.10848 3.56668 3.91973 3.96740 4.00824 4.12619 4.22146 4.29147 4.35098 4.43988 4.49511 4.56111 4.57085 4.60193 4.67684 4.80901 4.87935 4.91417 4.94463 5.07064 5.08130 5.13251 5.20423 5.30602 5.32405 5.35509 5.42322 5.50813 5.59277 5.64430 6.08713 6.41750 6.53585 7.12014 7.26620 7.60118 8.03203 8.75074 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.005790 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.618859 B = 4835.141674 C = 5655.249445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.114 3.886 4 N -0.452 5.452 5 C -0.359 4.359 6 H 0.104 0.896 7 C -0.002 4.002 8 N -0.902 5.902 9 Si 0.989 3.011 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.260 1.260 13 C 0.448 3.552 14 O -0.619 6.619 15 C 0.119 3.881 16 N -0.586 5.586 17 C 0.109 3.891 18 C -0.153 4.153 19 C -0.110 4.110 20 C -0.110 4.110 21 C -0.122 4.122 22 C 0.502 3.498 23 O -0.614 6.614 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.023 0.977 31 H 0.271 0.729 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.023 0.977 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.943 -11.172 -9.164 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C -0.009 4.009 4 N -0.171 5.171 5 C -0.486 4.486 6 H 0.121 0.879 7 C -0.204 4.204 8 N -0.540 5.540 9 Si 0.812 3.188 10 H -0.187 1.187 11 H -0.213 1.213 12 H -0.184 1.184 13 C 0.237 3.763 14 O -0.506 6.506 15 C -0.007 4.007 16 N -0.316 5.316 17 C -0.012 4.012 18 C -0.191 4.191 19 C -0.147 4.147 20 C -0.148 4.148 21 C -0.162 4.162 22 C 0.292 3.708 23 O -0.496 6.496 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.042 0.958 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.432 -10.492 -9.277 15.411 hybrid contribution -0.388 0.701 1.177 1.424 sum 6.044 -9.792 -8.099 14.071 Atomic orbital electron populations 1.21615 0.93883 1.02404 1.01487 1.21673 0.96991 0.96380 1.00591 1.21383 0.81816 0.96585 1.01152 1.43680 1.05053 1.63512 1.04878 1.19781 1.11509 1.28511 0.88801 0.87872 1.26357 0.96408 0.93387 1.04231 1.69960 1.33410 1.16365 1.34217 0.85062 0.78793 0.78517 0.76444 1.18745 1.21309 1.18418 1.21475 0.91134 0.79800 0.83911 1.90444 1.71032 1.56289 1.32828 1.21014 0.91216 1.04337 0.84142 1.47688 1.62832 1.08259 1.12827 1.22160 1.00414 0.81873 0.96728 1.21910 0.99101 1.02169 0.95921 1.21100 1.03344 0.93827 0.96474 1.21219 0.95864 0.97633 1.00077 1.21999 1.00277 1.05609 0.88270 1.21506 0.76331 0.83031 0.89939 1.90677 1.57180 1.29512 1.72269 0.93279 0.90554 0.92820 0.93930 0.92274 0.89432 0.95807 0.91938 0.86171 0.90257 0.88920 0.86838 0.93474 0.89241 0.91436 0.88591 0.95846 0.88195 0.88686 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.91 71.98 0.71 -3.81 16 2 C -0.12 -4.85 6.26 30.59 0.19 -4.66 16 3 C 0.11 5.83 5.04 86.38 0.44 6.26 16 4 N -0.45 -23.78 2.51 -635.54 -1.60 -25.38 16 5 C -0.36 -18.33 8.67 84.04 0.73 -17.60 16 6 H 0.10 4.79 6.96 -2.91 -0.02 4.77 16 7 C 0.00 -0.08 5.05 84.93 0.43 0.35 16 8 N -0.90 -50.41 11.31 21.66 0.25 -50.17 16 9 Si 0.99 39.77 29.59 68.60 2.03 41.80 16 10 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 11 H -0.29 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 13 C 0.45 22.95 7.68 87.66 0.67 23.62 16 14 O -0.62 -34.29 13.95 -3.07 -0.04 -34.33 16 15 C 0.12 5.05 4.60 85.63 0.39 5.44 16 16 N -0.59 -20.82 1.98 -825.51 -1.63 -22.45 16 17 C 0.11 2.60 5.91 86.24 0.51 3.11 16 18 C -0.15 -3.82 5.73 30.19 0.17 -3.65 16 19 C -0.11 -2.14 5.27 29.80 0.16 -1.98 16 20 C -0.11 -2.65 5.67 30.22 0.17 -2.48 16 21 C -0.12 -3.07 5.56 30.10 0.17 -2.90 16 22 C 0.50 19.35 6.73 88.10 0.59 19.94 16 23 O -0.61 -31.11 16.60 -3.03 -0.05 -31.17 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.09 4.78 5.47 -2.39 -0.01 4.77 16 30 H 0.02 1.30 7.35 -2.39 -0.02 1.28 16 31 H 0.27 14.33 8.32 -92.71 -0.77 13.56 16 32 H 0.12 4.24 7.25 -2.39 -0.02 4.22 16 33 H 0.08 3.81 7.37 -2.38 -0.02 3.79 16 34 H 0.09 1.98 7.77 -2.39 -0.02 1.96 16 35 H 0.11 1.77 6.71 -2.39 -0.02 1.75 16 36 H 0.05 1.74 5.94 -2.38 -0.01 1.72 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 1.17 7.89 -2.39 -0.02 1.16 16 40 H 0.02 0.78 7.86 -2.39 -0.02 0.76 16 41 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.09 2.32 8.13 -2.39 -0.02 2.30 16 43 H 0.13 2.09 6.79 -2.39 -0.02 2.07 16 Total: -1.00 -76.43 338.30 5.28 -71.15 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.99 Total: 28.89 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: 5.34 Total: 21.64 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -2.98 Total: -97.99 kcal Atomic # 8 Polarization: -65.40 SS G_CDS: -0.09 Total: -65.49 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -76.43 5.28 -71.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064308603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.921 kcal (2) G-P(sol) polarization free energy of solvation -76.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds