Wall clock time and date at job start Tue Mar 31 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46840 * 2 1 4 4 C 1.50701 * 109.47293 * 179.97438 * 3 2 1 5 5 O 1.21278 * 119.99850 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99984 * 180.02562 * 4 3 2 7 7 C 1.47424 * 125.64823 * 0.03828 * 6 4 3 8 8 C 1.54908 * 104.82940 * 204.09088 * 7 6 4 9 9 C 1.55153 * 101.58630 * 322.99437 * 8 7 6 10 10 C 1.47022 * 125.64449 * 179.97438 * 6 4 3 11 11 H 1.09002 * 109.88254 * 59.55817 * 10 6 4 12 12 C 1.50697 * 109.88348 * 298.54737 * 10 6 4 13 13 O 1.21283 * 120.00255 * 0.31608 * 12 10 6 14 14 N 1.34777 * 120.00038 * 180.31782 * 12 10 6 15 15 C 1.46501 * 119.99902 * 359.97438 * 14 12 10 16 16 C 1.46502 * 120.00121 * 179.97438 * 14 12 10 17 17 C 1.50709 * 109.46716 * 90.00101 * 16 14 12 18 18 H 1.08001 * 119.99722 * 0.02562 * 17 16 14 19 19 C 1.37877 * 119.99666 * 180.02562 * 17 16 14 20 20 N 1.31515 * 119.99508 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00087 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47326 * 90.00056 * 21 19 17 23 23 H 1.48506 * 109.47055 * 209.99941 * 21 19 17 24 24 H 1.48495 * 109.47404 * 329.99626 * 21 19 17 25 25 H 1.09001 * 109.46704 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47387 * 299.99697 * 1 2 3 27 27 H 1.08997 * 109.47193 * 60.00239 * 1 2 3 28 28 H 1.08999 * 109.47387 * 240.00303 * 2 1 3 29 29 H 1.08997 * 109.47193 * 119.99761 * 2 1 3 30 30 H 1.09009 * 109.47285 * 59.99656 * 3 2 1 31 31 H 1.09006 * 109.47315 * 299.99895 * 3 2 1 32 32 H 1.08992 * 110.36764 * 322.93101 * 7 6 4 33 33 H 1.09001 * 110.36208 * 85.14843 * 7 6 4 34 34 H 1.09006 * 111.00041 * 81.06839 * 8 7 6 35 35 H 1.09003 * 111.00467 * 204.91623 * 8 7 6 36 36 H 1.09006 * 110.72087 * 277.13814 * 9 8 7 37 37 H 1.09003 * 110.72278 * 153.86459 * 9 8 7 38 38 H 1.09001 * 109.47408 * 90.00214 * 15 14 12 39 39 H 1.09000 * 109.47143 * 210.00041 * 15 14 12 40 40 H 1.08995 * 109.46858 * 330.00071 * 15 14 12 41 41 H 1.09001 * 109.47430 * 209.99912 * 16 14 12 42 42 H 1.09002 * 109.47342 * 330.00480 * 16 14 12 43 43 H 0.97008 * 119.99662 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2207 2.6099 0.0013 7 6 3.6127 3.9529 0.0022 8 6 4.6945 4.8783 -0.6086 9 6 5.9947 4.2660 -0.0238 10 6 5.6838 2.7546 0.0025 11 1 6.1046 2.2744 -0.8810 12 6 6.2595 2.1310 1.2477 13 8 5.5254 1.6079 2.0591 14 7 7.5903 2.1547 1.4599 15 6 8.4772 2.7861 0.4796 16 6 8.1499 1.5490 2.6707 17 6 8.4724 0.1010 2.4050 18 1 8.2801 -0.3252 1.4315 19 6 9.0129 -0.6796 3.4048 20 7 9.2938 -1.9433 3.1731 21 14 9.3448 0.0575 5.0889 22 1 8.1450 -0.1102 5.9479 23 1 10.5011 -0.6345 5.7129 24 1 9.6522 1.5031 4.9447 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 2.7135 3.9627 -0.6135 33 1 3.3778 4.2622 1.0207 34 1 4.6900 4.8191 -1.6971 35 1 4.5625 5.9074 -0.2743 36 1 6.1775 4.6394 0.9838 37 1 6.8450 4.4739 -0.6734 38 1 8.6027 3.8398 0.7288 39 1 9.4480 2.2908 0.4958 40 1 8.0407 2.6976 -0.5152 41 1 9.0599 2.0778 2.9543 42 1 7.4231 1.6167 3.4802 43 1 9.6737 -2.4926 3.8766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071971619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:11 Heat of formation + Delta-G solvation = -68.126702 kcal Electronic energy + Delta-G solvation = -23376.026721 eV Core-core repulsion = 20035.405316 eV Total energy + Delta-G solvation = -3340.621405 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42902 -38.48802 -37.00686 -34.86500 -34.25728 -32.53575 -31.61823 -30.02470 -28.20116 -27.53488 -25.95262 -23.98993 -22.56629 -21.77037 -21.10138 -19.51672 -18.11129 -17.18060 -16.87493 -16.79982 -15.67650 -15.57112 -15.15570 -14.61249 -14.45546 -13.97507 -13.68353 -13.52461 -13.23958 -13.11020 -12.77446 -12.48556 -12.31922 -12.29020 -12.01501 -11.87688 -11.66879 -11.56704 -11.47047 -11.27816 -11.07317 -11.00306 -10.82544 -10.69057 -10.47469 -10.09217 -9.48252 -9.46296 -9.17544 -8.51337 -8.30875 -7.62150 -6.00165 -3.98286 2.88526 3.12523 3.33268 3.38997 3.40085 3.40718 3.96853 4.36100 4.41892 4.45804 4.73007 4.86005 4.91418 5.02523 5.07266 5.15579 5.28399 5.32285 5.42634 5.46415 5.51586 5.56041 5.59751 5.64103 5.69712 5.71406 5.77513 5.85592 5.98797 6.03102 6.18447 6.19328 6.31796 6.41843 6.75195 6.99606 7.41398 7.68881 7.70321 8.30794 8.52158 8.56482 9.03563 9.09377 9.59729 11.13619 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016097 B = 0.005399 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.000009 B = 5184.820651 C = 6393.664445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.129 4.129 4 C 0.528 3.472 5 O -0.511 6.511 6 N -0.608 5.608 7 C 0.101 3.899 8 C -0.131 4.131 9 C -0.122 4.122 10 C 0.119 3.881 11 H 0.095 0.905 12 C 0.502 3.498 13 O -0.521 6.521 14 N -0.598 5.598 15 C 0.083 3.917 16 C 0.218 3.782 17 C -0.526 4.526 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.877 3.123 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.029 0.971 42 H 0.034 0.966 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 16.883 -9.929 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.169 4.169 4 C 0.317 3.683 5 O -0.385 6.385 6 N -0.344 5.344 7 C -0.022 4.022 8 C -0.169 4.169 9 C -0.161 4.161 10 C 0.012 3.988 11 H 0.112 0.888 12 C 0.287 3.713 13 O -0.397 6.397 14 N -0.332 5.332 15 C -0.061 4.061 16 C 0.098 3.902 17 C -0.564 4.564 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.536 5.536 21 Si 0.704 3.296 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.581 15.742 -9.389 22.232 hybrid contribution 0.390 0.235 0.913 1.020 sum -12.192 15.977 -8.476 21.812 Atomic orbital electron populations 1.21777 0.95674 1.01831 1.01448 1.21304 0.94939 0.94838 1.03953 1.21642 0.91619 1.00019 1.03654 1.20345 0.89842 0.82189 0.75938 1.90794 1.70042 1.30236 1.47384 1.48232 1.05250 1.05917 1.75002 1.22304 0.96690 0.82224 1.01014 1.22787 0.94194 0.99025 1.00920 1.22704 0.98613 0.91902 1.02845 1.21487 0.82453 0.96834 0.98059 0.88753 1.20446 0.82673 0.80468 0.87739 1.90665 1.58746 1.43864 1.46381 1.47765 1.05252 1.56811 1.23330 1.21741 0.96009 0.96709 0.91689 1.19627 0.93431 0.94195 0.82968 1.21358 1.41341 0.93175 1.00534 0.90750 1.24865 0.95121 0.94665 0.98425 1.69914 1.43903 1.06221 1.33610 0.86850 0.78210 0.79583 0.84996 1.20011 1.21082 1.19129 0.92465 0.92779 0.92937 0.91275 0.90849 0.89218 0.89503 0.90442 0.91380 0.90295 0.89599 0.90016 0.89044 0.93564 0.90584 0.92341 0.95302 0.94817 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.06 16 2 C -0.11 -1.45 5.22 -26.73 -0.14 -1.59 16 3 C -0.13 -1.59 4.71 -27.88 -0.13 -1.72 16 4 C 0.53 9.27 7.01 -10.98 -0.08 9.19 16 5 O -0.51 -11.89 15.24 -8.88 -0.14 -12.03 16 6 N -0.61 -9.23 2.84 -164.32 -0.47 -9.70 16 7 C 0.10 0.99 6.69 -2.53 -0.02 0.97 16 8 C -0.13 -1.01 7.08 -24.59 -0.17 -1.18 16 9 C -0.12 -1.29 5.04 -24.90 -0.13 -1.41 16 10 C 0.12 1.90 2.39 -68.10 -0.16 1.74 16 11 H 0.09 1.51 7.38 -51.93 -0.38 1.13 16 12 C 0.50 11.03 6.59 -10.99 -0.07 10.96 16 13 O -0.52 -13.99 14.61 -8.88 -0.13 -14.12 16 14 N -0.60 -12.97 2.86 -182.95 -0.52 -13.49 16 15 C 0.08 1.29 8.98 59.85 0.54 1.83 16 16 C 0.22 5.62 4.23 -5.19 -0.02 5.60 16 17 C -0.53 -16.04 9.94 -34.44 -0.34 -16.38 16 18 H 0.07 2.53 8.06 -52.49 -0.42 2.11 16 19 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 20 N -0.90 -29.02 13.96 55.43 0.77 -28.24 16 21 Si 0.88 22.44 27.47 -169.99 -4.67 17.77 16 22 H -0.27 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.27 -6.36 6.54 56.52 0.37 -6.00 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 29 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 30 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.09 0.79 7.85 -51.93 -0.41 0.39 16 32 H 0.08 0.55 7.48 -51.93 -0.39 0.17 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 37 H 0.09 0.75 7.16 -51.93 -0.37 0.38 16 38 H 0.05 0.57 7.88 -51.93 -0.41 0.16 16 39 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 40 H 0.06 0.77 5.89 -51.93 -0.31 0.46 16 41 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 42 H 0.03 0.93 6.85 -51.93 -0.36 0.58 16 43 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 344.09 15.07 5.19 5.19 Total: -1.00 -40.37 344.09 -7.63 -48.00 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -7.21 Total: -2.40 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -0.46 Total: 9.03 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.22 Total: -51.43 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.27 Total: -26.15 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -40.37 -7.63 -48.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071971619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.129 kcal (2) G-P(sol) polarization free energy of solvation -40.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds