Wall clock time and date at job start Tue Mar 31 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46840 * 2 1 4 4 C 1.50701 * 109.47293 * 179.97438 * 3 2 1 5 5 O 1.21278 * 119.99850 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99984 * 180.02562 * 4 3 2 7 7 C 1.47424 * 125.64823 * 0.03828 * 6 4 3 8 8 C 1.54908 * 104.82940 * 204.09088 * 7 6 4 9 9 C 1.55153 * 101.58630 * 322.99437 * 8 7 6 10 10 C 1.47022 * 125.64449 * 179.97438 * 6 4 3 11 11 H 1.09002 * 109.88254 * 59.55817 * 10 6 4 12 12 C 1.50697 * 109.88348 * 298.54737 * 10 6 4 13 13 O 1.21283 * 120.00255 * 0.31608 * 12 10 6 14 14 N 1.34777 * 120.00038 * 180.31782 * 12 10 6 15 15 C 1.46501 * 119.99902 * 359.97438 * 14 12 10 16 16 C 1.46502 * 120.00121 * 179.97438 * 14 12 10 17 17 C 1.50709 * 109.46716 * 90.00101 * 16 14 12 18 18 H 1.08001 * 119.99722 * 0.02562 * 17 16 14 19 19 C 1.37877 * 119.99666 * 180.02562 * 17 16 14 20 20 N 1.31515 * 119.99508 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00087 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47326 * 90.00056 * 21 19 17 23 23 H 1.48506 * 109.47055 * 209.99941 * 21 19 17 24 24 H 1.48495 * 109.47404 * 329.99626 * 21 19 17 25 25 H 1.09001 * 109.46704 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47387 * 299.99697 * 1 2 3 27 27 H 1.08997 * 109.47193 * 60.00239 * 1 2 3 28 28 H 1.08999 * 109.47387 * 240.00303 * 2 1 3 29 29 H 1.08997 * 109.47193 * 119.99761 * 2 1 3 30 30 H 1.09009 * 109.47285 * 59.99656 * 3 2 1 31 31 H 1.09006 * 109.47315 * 299.99895 * 3 2 1 32 32 H 1.08992 * 110.36764 * 322.93101 * 7 6 4 33 33 H 1.09001 * 110.36208 * 85.14843 * 7 6 4 34 34 H 1.09006 * 111.00041 * 81.06839 * 8 7 6 35 35 H 1.09003 * 111.00467 * 204.91623 * 8 7 6 36 36 H 1.09006 * 110.72087 * 277.13814 * 9 8 7 37 37 H 1.09003 * 110.72278 * 153.86459 * 9 8 7 38 38 H 1.09001 * 109.47408 * 90.00214 * 15 14 12 39 39 H 1.09000 * 109.47143 * 210.00041 * 15 14 12 40 40 H 1.08995 * 109.46858 * 330.00071 * 15 14 12 41 41 H 1.09001 * 109.47430 * 209.99912 * 16 14 12 42 42 H 1.09002 * 109.47342 * 330.00480 * 16 14 12 43 43 H 0.97008 * 119.99662 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2207 2.6099 0.0013 7 6 3.6127 3.9529 0.0022 8 6 4.6945 4.8783 -0.6086 9 6 5.9947 4.2660 -0.0238 10 6 5.6838 2.7546 0.0025 11 1 6.1046 2.2744 -0.8810 12 6 6.2595 2.1310 1.2477 13 8 5.5254 1.6079 2.0591 14 7 7.5903 2.1547 1.4599 15 6 8.4772 2.7861 0.4796 16 6 8.1499 1.5490 2.6707 17 6 8.4724 0.1010 2.4050 18 1 8.2801 -0.3252 1.4315 19 6 9.0129 -0.6796 3.4048 20 7 9.2938 -1.9433 3.1731 21 14 9.3448 0.0575 5.0889 22 1 8.1450 -0.1102 5.9479 23 1 10.5011 -0.6345 5.7129 24 1 9.6522 1.5031 4.9447 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 2.7135 3.9627 -0.6135 33 1 3.3778 4.2622 1.0207 34 1 4.6900 4.8191 -1.6971 35 1 4.5625 5.9074 -0.2743 36 1 6.1775 4.6394 0.9838 37 1 6.8450 4.4739 -0.6734 38 1 8.6027 3.8398 0.7288 39 1 9.4480 2.2908 0.4958 40 1 8.0407 2.6976 -0.5152 41 1 9.0599 2.0778 2.9543 42 1 7.4231 1.6167 3.4802 43 1 9.6737 -2.4926 3.8766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071971619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:11 Heat of formation + Delta-G solvation = -98.258516 kcal Electronic energy + Delta-G solvation = -23377.333334 eV Core-core repulsion = 20035.405316 eV Total energy + Delta-G solvation = -3341.928019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.73903 -40.03431 -38.22689 -36.66972 -35.33153 -34.77657 -32.75097 -31.41028 -29.78874 -28.59073 -27.46370 -25.31838 -24.23062 -22.66203 -22.23995 -20.86816 -19.53401 -19.19727 -18.46417 -18.08910 -17.14335 -16.81824 -16.62306 -16.43041 -15.70234 -15.41781 -15.00177 -14.75931 -14.54958 -14.33978 -14.15257 -13.80898 -13.71546 -13.68320 -13.30460 -13.23589 -12.90280 -12.86571 -12.68523 -12.59831 -12.49621 -12.15714 -12.06302 -11.89811 -11.80783 -11.74386 -11.66570 -10.89206 -10.86022 -10.76592 -9.64490 -9.41668 -8.38788 -6.45005 1.26274 1.32618 1.41212 1.59340 1.77268 1.98500 2.26578 2.43362 2.95024 3.44106 3.51500 3.79333 3.81071 3.95315 4.04074 4.08827 4.22335 4.36907 4.50469 4.56792 4.61166 4.63198 4.67657 4.74799 4.79323 4.83288 4.86657 4.87988 4.93711 4.95466 5.11563 5.19003 5.23184 5.28316 5.36262 5.41357 5.43165 5.58981 6.19507 6.53113 6.56373 6.67240 7.15460 7.24748 7.42100 8.79428 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016097 B = 0.005399 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.000009 B = 5184.820651 C = 6393.664445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C -0.118 4.118 4 C 0.511 3.489 5 O -0.590 6.590 6 N -0.610 5.610 7 C 0.088 3.912 8 C -0.115 4.115 9 C -0.115 4.115 10 C 0.120 3.880 11 H 0.089 0.911 12 C 0.487 3.513 13 O -0.586 6.586 14 N -0.608 5.608 15 C 0.075 3.925 16 C 0.228 3.772 17 C -0.540 4.540 18 H 0.015 0.985 19 C 0.005 3.995 20 N -0.949 5.949 21 Si 0.957 3.043 22 H -0.279 1.279 23 H -0.270 1.270 24 H -0.231 1.231 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.107 0.893 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.013 0.987 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.390 21.675 -10.496 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.157 4.157 4 C 0.302 3.698 5 O -0.469 6.469 6 N -0.344 5.344 7 C -0.032 4.032 8 C -0.152 4.152 9 C -0.153 4.153 10 C 0.011 3.989 11 H 0.107 0.893 12 C 0.274 3.726 13 O -0.465 6.465 14 N -0.340 5.340 15 C -0.067 4.067 16 C 0.105 3.895 17 C -0.579 4.579 18 H 0.033 0.967 19 C -0.192 4.192 20 N -0.589 5.589 21 Si 0.779 3.221 22 H -0.205 1.205 23 H -0.194 1.194 24 H -0.154 1.154 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.125 0.875 31 H 0.150 0.850 32 H 0.131 0.869 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.094 0.906 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.418 20.639 -10.015 26.576 hybrid contribution 0.652 -1.331 0.996 1.786 sum -12.766 19.308 -9.019 24.842 Atomic orbital electron populations 1.21715 0.92382 1.02482 1.03155 1.21287 0.97655 0.95134 1.01157 1.21695 0.87706 0.99897 1.06400 1.21421 0.92014 0.81847 0.74492 1.90754 1.71891 1.33195 1.51087 1.48509 1.05265 1.07525 1.73129 1.22753 0.98733 0.79587 1.02166 1.22843 0.90812 0.99730 1.01825 1.22802 1.01599 0.87224 1.03697 1.21631 0.83054 1.00248 0.93925 0.89320 1.21689 0.82380 0.79509 0.88996 1.90616 1.60268 1.46613 1.49030 1.47914 1.06299 1.56499 1.23271 1.22105 0.94339 0.98616 0.91594 1.19284 0.93866 0.91711 0.84604 1.21588 1.41738 0.96161 0.98370 0.96694 1.26001 0.94469 0.94991 1.03739 1.70089 1.45014 1.08213 1.35598 0.85590 0.78107 0.80635 0.77774 1.20528 1.19442 1.15419 0.92488 0.91743 0.90390 0.92928 0.95073 0.87515 0.85041 0.86926 0.91474 0.88357 0.86290 0.90574 0.85945 0.88770 0.91826 0.89951 0.92486 0.96911 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 71.98 0.71 -1.75 16 2 C -0.11 -3.07 5.22 30.59 0.16 -2.91 16 3 C -0.12 -2.78 4.71 29.85 0.14 -2.64 16 4 C 0.51 18.53 7.01 87.66 0.61 19.14 16 5 O -0.59 -29.85 15.24 10.78 0.16 -29.69 16 6 N -0.61 -18.06 2.84 -792.19 -2.25 -20.31 16 7 C 0.09 1.40 6.69 86.85 0.58 1.98 16 8 C -0.11 -1.14 7.08 31.98 0.23 -0.91 16 9 C -0.12 -1.99 5.04 31.78 0.16 -1.83 16 10 C 0.12 3.74 2.39 44.60 0.11 3.84 16 11 H 0.09 2.85 7.38 -2.39 -0.02 2.83 16 12 C 0.49 22.10 6.59 87.66 0.58 22.68 16 13 O -0.59 -33.39 14.61 10.77 0.16 -33.23 16 14 N -0.61 -26.72 2.86 -851.11 -2.43 -29.16 16 15 C 0.08 2.23 8.98 127.77 1.15 3.37 16 16 C 0.23 11.96 4.23 85.64 0.36 12.33 16 17 C -0.54 -34.81 9.94 25.60 0.25 -34.55 16 18 H 0.01 1.09 8.06 -2.91 -0.02 1.07 16 19 C 0.01 0.34 5.47 84.65 0.46 0.80 16 20 N -0.95 -64.27 13.96 21.45 0.30 -63.97 16 21 Si 0.96 47.07 27.47 68.60 1.88 48.95 16 22 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.23 -9.99 6.54 99.48 0.65 -9.34 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.54 8.10 -2.39 -0.02 1.53 16 29 H 0.03 1.06 8.10 -2.39 -0.02 1.04 16 30 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.13 1.92 7.85 -2.38 -0.02 1.90 16 32 H 0.11 1.02 7.48 -2.39 -0.02 1.00 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 1.45 7.85 -2.38 -0.02 1.43 16 37 H 0.12 1.37 7.16 -2.39 -0.02 1.35 16 38 H 0.09 1.92 7.88 -2.39 -0.02 1.90 16 39 H 0.06 2.04 8.07 -2.39 -0.02 2.03 16 40 H 0.08 2.02 5.89 -2.39 -0.01 2.01 16 41 H 0.06 2.66 7.13 -2.39 -0.02 2.64 16 42 H 0.01 0.72 6.85 -2.39 -0.02 0.71 16 43 H 0.27 16.78 8.31 -92.70 -0.77 16.01 16 Total: -1.00 -101.62 344.09 4.25 -97.37 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.92 Total: 10.49 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 5.51 Total: 19.55 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -4.38 Total: -113.44 kcal Atomic # 8 Polarization: -63.24 SS G_CDS: 0.32 Total: -62.92 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.88 Total: 48.95 kcal Total: -101.62 4.25 -97.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071971619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.888 kcal (2) G-P(sol) polarization free energy of solvation -101.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds