Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47265 * 2 1 4 4 N 1.46495 * 109.47324 * 120.00720 * 2 1 3 5 5 C 1.46507 * 119.99804 * 299.99303 * 4 2 1 6 6 C 1.50698 * 109.47008 * 270.00165 * 5 4 2 7 7 H 1.07998 * 120.00521 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99831 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99755 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00154 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47320 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47101 * 120.00088 * 10 8 6 13 13 H 1.48498 * 109.47223 * 240.00209 * 10 8 6 14 14 C 1.34777 * 120.00468 * 119.99965 * 4 2 1 15 15 O 1.21279 * 120.00153 * 179.97438 * 14 4 2 16 16 C 1.50697 * 119.99487 * 359.97438 * 14 4 2 17 17 C 1.53001 * 109.46931 * 180.02562 * 16 14 4 18 18 N 1.46498 * 109.47601 * 179.97438 * 17 16 14 19 19 C 1.46768 * 124.34879 * 89.99607 * 18 17 16 20 20 C 1.54480 * 105.55098 * 197.08340 * 19 18 17 21 21 C 1.54631 * 101.76472 * 334.54015 * 20 19 18 22 22 C 1.34621 * 124.47196 * 270.02849 * 18 17 16 23 23 O 1.21286 * 124.90539 * 359.55259 * 22 18 17 24 24 H 1.09000 * 109.46689 * 299.99841 * 1 2 3 25 25 H 1.08998 * 109.47189 * 59.99477 * 1 2 3 26 26 H 1.08997 * 109.47068 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46755 * 240.00419 * 2 1 3 28 28 H 1.09004 * 109.47040 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47444 * 300.00366 * 3 2 1 30 30 H 1.09000 * 109.47137 * 60.00433 * 3 2 1 31 31 H 1.08996 * 109.46611 * 30.00222 * 5 4 2 32 32 H 1.08993 * 109.46885 * 150.00398 * 5 4 2 33 33 H 0.97008 * 119.99933 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47407 * 60.00659 * 16 14 4 35 35 H 1.08998 * 109.47731 * 300.00045 * 16 14 4 36 36 H 1.09002 * 109.47341 * 60.00111 * 17 16 14 37 37 H 1.08998 * 109.47560 * 299.99991 * 17 16 14 38 38 H 1.09002 * 110.24468 * 78.03845 * 19 18 17 39 39 H 1.09002 * 110.24463 * 316.12602 * 19 18 17 40 40 H 1.08995 * 110.97082 * 92.66028 * 20 19 18 41 41 H 1.09001 * 110.96924 * 216.42557 * 20 19 18 42 42 H 1.09000 * 110.48694 * 143.47575 * 21 20 19 43 43 H 1.08994 * 110.49106 * 266.12244 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.6646 -0.1902 2.5267 6 6 2.7034 0.8016 2.9829 7 1 3.5430 1.0361 2.3453 8 6 2.5815 1.4105 4.2139 9 7 1.5589 1.1254 4.9902 10 14 3.8687 2.6405 4.7792 11 1 4.9096 2.7852 3.7299 12 1 3.2238 3.9561 5.0208 13 1 4.4958 2.1584 6.0359 14 6 2.7933 -1.7865 1.0723 15 8 3.1979 -2.3580 2.0625 16 6 3.1568 -2.3015 -0.2965 17 6 4.0360 -3.5458 -0.1562 18 7 4.3890 -4.0469 -1.4868 19 6 5.5781 -3.6310 -2.2398 20 6 5.3119 -4.0543 -3.7014 21 6 4.3187 -5.2246 -3.5147 22 6 3.6659 -4.9476 -2.1784 23 8 2.6397 -5.4618 -1.7866 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 0.6906 0.2972 2.4843 32 1 1.6240 -1.0228 3.2290 33 1 1.4732 1.5535 5.8564 34 1 3.7016 -1.5309 -0.8418 35 1 2.2483 -2.5586 -0.8412 36 1 3.4909 -4.3164 0.3889 37 1 4.9446 -3.2893 0.3885 38 1 6.4639 -4.1371 -1.8558 39 1 5.7051 -2.5502 -2.1773 40 1 4.8553 -3.2415 -4.2660 41 1 6.2292 -4.3942 -4.1823 42 1 3.5739 -5.2236 -4.3106 43 1 4.8502 -6.1759 -3.4896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075481415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = -77.834962 kcal Electronic energy + Delta-G solvation = -22939.423712 eV Core-core repulsion = 19598.381325 eV Total energy + Delta-G solvation = -3341.042387 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46004 -39.14995 -36.49988 -36.00220 -33.77629 -32.78616 -30.82783 -30.09941 -27.73384 -27.30946 -26.70436 -24.36227 -22.46050 -22.04089 -21.17008 -19.39346 -18.00851 -17.16628 -16.71953 -16.45707 -15.96601 -15.59379 -15.15023 -14.73309 -14.32745 -13.91495 -13.70853 -13.53148 -13.43723 -13.21945 -13.04395 -12.61189 -12.37681 -12.14158 -12.08711 -11.72855 -11.65476 -11.54386 -11.29455 -11.16585 -11.01456 -10.86060 -10.82194 -10.57035 -10.36139 -10.00927 -9.85078 -9.51926 -9.02575 -8.69408 -8.41069 -7.63220 -6.02107 -4.05396 2.50329 2.89399 3.29521 3.36817 3.39345 3.45193 3.98185 4.16366 4.22876 4.45725 4.54138 4.80597 5.06571 5.10556 5.15451 5.26205 5.27563 5.31990 5.33965 5.41728 5.51835 5.58250 5.65224 5.68501 5.69157 5.88737 6.02565 6.08123 6.17338 6.27959 6.37028 6.48691 6.61614 6.95429 7.06780 7.13421 7.50116 7.59053 7.94716 8.10137 8.27215 8.46213 8.92936 9.11095 9.58587 11.06104 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.004080 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.987407 B = 6860.949983 C = 7144.443448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.156 4.156 4 N -0.592 5.592 5 C 0.245 3.755 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.509 3.491 15 O -0.544 6.544 16 C -0.156 4.156 17 C 0.142 3.858 18 N -0.620 5.620 19 C 0.098 3.902 20 C -0.132 4.132 21 C -0.155 4.155 22 C 0.512 3.488 23 O -0.531 6.531 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 -5.971 -19.515 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.214 4.214 4 N -0.323 5.323 5 C 0.126 3.874 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.295 3.705 15 O -0.422 6.422 16 C -0.197 4.197 17 C 0.021 3.979 18 N -0.354 5.354 19 C -0.025 4.025 20 C -0.170 4.170 21 C -0.195 4.195 22 C 0.299 3.701 23 O -0.407 6.407 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.652 -6.459 -18.506 20.400 hybrid contribution 0.710 0.939 0.363 1.232 sum 6.362 -5.520 -18.143 20.003 Atomic orbital electron populations 1.22158 0.95596 1.01862 1.02417 1.20992 0.94150 0.94071 0.87942 1.22133 1.01249 0.95716 1.02300 1.48325 1.48990 1.26346 1.08674 1.19249 0.95905 0.95007 0.77250 1.21466 1.08857 1.23278 1.02049 0.92360 1.24935 0.95749 0.97159 0.96384 1.69946 1.29504 1.43325 1.10647 0.86493 0.81634 0.80825 0.78754 1.19877 1.21064 1.20967 1.20110 0.79327 0.81000 0.90056 1.90676 1.53643 1.58177 1.39719 1.22032 1.01608 0.98770 0.97330 1.21136 0.99982 0.95708 0.81119 1.48455 1.25069 1.43250 1.18597 1.22110 0.88130 1.01120 0.91117 1.22599 1.00130 0.98177 0.96054 1.22331 1.00171 1.00518 0.96511 1.21011 0.83646 0.78464 0.86931 1.90746 1.23395 1.52805 1.73772 0.91276 0.92306 0.92884 0.90857 0.92825 0.93317 0.90034 0.94797 0.94054 0.92862 0.89457 0.89385 0.89125 0.89356 0.90947 0.90158 0.89931 0.89215 0.88154 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.17 37.16 0.34 -2.13 16 2 C 0.13 2.20 3.17 -67.94 -0.22 1.98 16 3 C -0.16 -2.56 8.47 37.15 0.31 -2.24 16 4 N -0.59 -12.49 2.39 -167.47 -0.40 -12.89 16 5 C 0.24 6.35 4.59 -5.19 -0.02 6.33 16 6 C -0.52 -14.32 7.83 -34.44 -0.27 -14.59 16 7 H 0.06 1.61 7.63 -52.49 -0.40 1.21 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 10 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.51 10.61 7.67 -10.99 -0.08 10.53 16 15 O -0.54 -13.62 15.56 5.56 0.09 -13.53 16 16 C -0.16 -2.38 4.33 -27.88 -0.12 -2.50 16 17 C 0.14 2.08 5.23 -4.04 -0.02 2.06 16 18 N -0.62 -7.31 2.94 -172.35 -0.51 -7.81 16 19 C 0.10 0.75 7.34 -3.12 -0.02 0.72 16 20 C -0.13 -0.72 7.18 -25.10 -0.18 -0.90 16 21 C -0.16 -1.19 6.86 -26.74 -0.18 -1.37 16 22 C 0.51 6.60 8.03 -10.77 -0.09 6.51 16 23 O -0.53 -9.33 17.60 5.55 0.10 -9.23 16 24 H 0.07 1.19 6.66 -51.93 -0.35 0.84 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.02 5.77 -51.92 -0.30 0.72 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 31 H 0.03 0.89 6.43 -51.93 -0.33 0.56 16 32 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.09 1.15 7.79 -51.93 -0.40 0.74 16 35 H 0.09 1.32 7.79 -51.93 -0.40 0.91 16 36 H 0.09 1.55 7.89 -51.93 -0.41 1.14 16 37 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -34.85 350.09 -7.51 -42.36 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.13 Total: -1.05 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -0.65 Total: 5.97 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.17 Total: -46.47 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.18 Total: -22.77 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.85 -7.51 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075481415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.475 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds