Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47265 * 2 1 4 4 N 1.46495 * 109.47324 * 120.00720 * 2 1 3 5 5 C 1.46507 * 119.99804 * 299.99303 * 4 2 1 6 6 C 1.50698 * 109.47008 * 270.00165 * 5 4 2 7 7 H 1.07998 * 120.00521 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99831 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99755 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00154 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47320 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47101 * 120.00088 * 10 8 6 13 13 H 1.48498 * 109.47223 * 240.00209 * 10 8 6 14 14 C 1.34777 * 120.00468 * 119.99965 * 4 2 1 15 15 O 1.21279 * 120.00153 * 179.97438 * 14 4 2 16 16 C 1.50697 * 119.99487 * 359.97438 * 14 4 2 17 17 C 1.53001 * 109.46931 * 180.02562 * 16 14 4 18 18 N 1.46498 * 109.47601 * 179.97438 * 17 16 14 19 19 C 1.46768 * 124.34879 * 89.99607 * 18 17 16 20 20 C 1.54480 * 105.55098 * 197.08340 * 19 18 17 21 21 C 1.54631 * 101.76472 * 334.54015 * 20 19 18 22 22 C 1.34621 * 124.47196 * 270.02849 * 18 17 16 23 23 O 1.21286 * 124.90539 * 359.55259 * 22 18 17 24 24 H 1.09000 * 109.46689 * 299.99841 * 1 2 3 25 25 H 1.08998 * 109.47189 * 59.99477 * 1 2 3 26 26 H 1.08997 * 109.47068 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46755 * 240.00419 * 2 1 3 28 28 H 1.09004 * 109.47040 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47444 * 300.00366 * 3 2 1 30 30 H 1.09000 * 109.47137 * 60.00433 * 3 2 1 31 31 H 1.08996 * 109.46611 * 30.00222 * 5 4 2 32 32 H 1.08993 * 109.46885 * 150.00398 * 5 4 2 33 33 H 0.97008 * 119.99933 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47407 * 60.00659 * 16 14 4 35 35 H 1.08998 * 109.47731 * 300.00045 * 16 14 4 36 36 H 1.09002 * 109.47341 * 60.00111 * 17 16 14 37 37 H 1.08998 * 109.47560 * 299.99991 * 17 16 14 38 38 H 1.09002 * 110.24468 * 78.03845 * 19 18 17 39 39 H 1.09002 * 110.24463 * 316.12602 * 19 18 17 40 40 H 1.08995 * 110.97082 * 92.66028 * 20 19 18 41 41 H 1.09001 * 110.96924 * 216.42557 * 20 19 18 42 42 H 1.09000 * 110.48694 * 143.47575 * 21 20 19 43 43 H 1.08994 * 110.49106 * 266.12244 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.6646 -0.1902 2.5267 6 6 2.7034 0.8016 2.9829 7 1 3.5430 1.0361 2.3453 8 6 2.5815 1.4105 4.2139 9 7 1.5589 1.1254 4.9902 10 14 3.8687 2.6405 4.7792 11 1 4.9096 2.7852 3.7299 12 1 3.2238 3.9561 5.0208 13 1 4.4958 2.1584 6.0359 14 6 2.7933 -1.7865 1.0723 15 8 3.1979 -2.3580 2.0625 16 6 3.1568 -2.3015 -0.2965 17 6 4.0360 -3.5458 -0.1562 18 7 4.3890 -4.0469 -1.4868 19 6 5.5781 -3.6310 -2.2398 20 6 5.3119 -4.0543 -3.7014 21 6 4.3187 -5.2246 -3.5147 22 6 3.6659 -4.9476 -2.1784 23 8 2.6397 -5.4618 -1.7866 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 0.6906 0.2972 2.4843 32 1 1.6240 -1.0228 3.2290 33 1 1.4732 1.5535 5.8564 34 1 3.7016 -1.5309 -0.8418 35 1 2.2483 -2.5586 -0.8412 36 1 3.4909 -4.3164 0.3889 37 1 4.9446 -3.2893 0.3885 38 1 6.4639 -4.1371 -1.8558 39 1 5.7051 -2.5502 -2.1773 40 1 4.8553 -3.2415 -4.2660 41 1 6.2292 -4.3942 -4.1823 42 1 3.5739 -5.2236 -4.3106 43 1 4.8502 -6.1759 -3.4896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075481415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = -101.308007 kcal Electronic energy + Delta-G solvation = -22940.441580 eV Core-core repulsion = 19598.381325 eV Total energy + Delta-G solvation = -3342.060254 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.44344 -40.72801 -37.70445 -37.42568 -35.08592 -34.60413 -32.44891 -31.29658 -29.15781 -28.41362 -28.00509 -25.89211 -24.17971 -22.71305 -22.59989 -20.36701 -19.57727 -18.61322 -18.47125 -17.54782 -17.14468 -16.93499 -16.69175 -16.26175 -15.90164 -14.93724 -14.88732 -14.82605 -14.67374 -14.34181 -14.16456 -14.06705 -13.71883 -13.46170 -13.31749 -13.20813 -13.04610 -12.84943 -12.74873 -12.50549 -12.33844 -12.25115 -12.14030 -12.08532 -11.79221 -11.65608 -11.51632 -10.86567 -10.64620 -10.61369 -9.74601 -9.44503 -8.19133 -6.31386 1.36419 1.38748 1.50022 1.54122 1.78533 1.91130 2.34811 2.49932 3.10911 3.46357 3.67128 3.70480 3.85391 3.97628 4.00506 4.12265 4.26858 4.29593 4.37152 4.43522 4.64527 4.70547 4.77034 4.82490 4.84472 4.89117 4.93618 4.99775 5.03703 5.10805 5.15753 5.21942 5.28831 5.40975 5.54035 5.56884 5.64231 5.87567 6.10699 6.18120 6.72812 6.81263 7.13772 7.30358 7.46786 8.88789 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.004080 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.987407 B = 6860.949983 C = 7144.443448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 C -0.149 4.149 4 N -0.596 5.596 5 C 0.263 3.737 6 C -0.523 4.523 7 H 0.058 0.942 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.965 3.035 11 H -0.263 1.263 12 H -0.272 1.272 13 H -0.285 1.285 14 C 0.498 3.502 15 O -0.598 6.598 16 C -0.134 4.134 17 C 0.148 3.852 18 N -0.618 5.618 19 C 0.088 3.912 20 C -0.116 4.116 21 C -0.146 4.146 22 C 0.496 3.504 23 O -0.591 6.591 24 H 0.039 0.961 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.112 0.888 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.024 0.976 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.130 -4.747 -23.201 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 C -0.207 4.207 4 N -0.327 5.327 5 C 0.141 3.859 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.573 5.573 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.198 1.198 13 H -0.211 1.211 14 C 0.286 3.714 15 O -0.479 6.479 16 C -0.175 4.175 17 C 0.024 3.976 18 N -0.351 5.351 19 C -0.033 4.033 20 C -0.154 4.154 21 C -0.185 4.185 22 C 0.286 3.714 23 O -0.472 6.472 24 H 0.058 0.942 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.007 0.993 33 H 0.073 0.927 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.716 -5.206 -22.266 24.133 hybrid contribution 0.052 0.519 1.501 1.589 sum 7.768 -4.687 -20.765 22.660 Atomic orbital electron populations 1.22130 0.94658 1.01870 1.02917 1.21415 0.95007 0.94311 0.87037 1.22060 1.00843 0.95338 1.02488 1.48385 1.49044 1.26864 1.08420 1.18669 0.95386 0.92659 0.79159 1.21676 1.08909 1.23293 1.02290 0.92389 1.25854 0.97876 0.99204 0.96524 1.70079 1.31448 1.44659 1.11118 0.85405 0.79008 0.78526 0.78103 1.18731 1.19756 1.21133 1.21126 0.78231 0.80220 0.91803 1.90643 1.55575 1.59628 1.42102 1.21904 1.02426 0.99605 0.93550 1.20824 0.99448 0.94432 0.82870 1.48573 1.26265 1.42807 1.17477 1.22484 0.86583 1.02166 0.92053 1.22651 1.00776 0.97346 0.94577 1.22373 1.00718 1.02346 0.93095 1.22063 0.82964 0.77647 0.88682 1.90708 1.26204 1.54891 1.75424 0.94160 0.88327 0.93163 0.87022 0.93342 0.89113 0.93775 0.95824 0.99277 0.92672 0.85968 0.88518 0.92776 0.89293 0.89713 0.88863 0.88756 0.86118 0.87064 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.61 9.17 71.98 0.66 -3.95 16 2 C 0.12 3.91 3.17 44.99 0.14 4.06 16 3 C -0.15 -4.59 8.47 71.98 0.61 -3.98 16 4 N -0.60 -25.68 2.39 -802.16 -1.91 -27.60 16 5 C 0.26 14.36 4.59 85.63 0.39 14.75 16 6 C -0.52 -29.79 7.83 25.60 0.20 -29.59 16 7 H 0.06 3.23 7.63 -2.91 -0.02 3.21 16 8 C 0.00 0.21 5.46 84.66 0.46 0.67 16 9 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 10 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 11 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 14 C 0.50 21.23 7.67 87.66 0.67 21.90 16 15 O -0.60 -31.64 15.56 -3.03 -0.05 -31.69 16 16 C -0.13 -3.93 4.33 29.85 0.13 -3.80 16 17 C 0.15 4.32 5.23 86.38 0.45 4.77 16 18 N -0.62 -13.59 2.94 -817.66 -2.40 -15.99 16 19 C 0.09 1.02 7.34 86.83 0.64 1.65 16 20 C -0.12 -0.71 7.18 31.65 0.23 -0.48 16 21 C -0.15 -1.76 6.86 30.59 0.21 -1.55 16 22 C 0.50 12.27 8.03 87.87 0.71 12.97 16 23 O -0.59 -21.28 17.60 -3.05 -0.05 -21.33 16 24 H 0.04 1.40 6.66 -2.39 -0.02 1.38 16 25 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.11 2.69 5.77 -2.38 -0.01 2.67 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.04 1.69 6.92 -2.39 -0.02 1.67 16 31 H 0.02 1.33 6.43 -2.39 -0.02 1.31 16 32 H -0.01 -0.70 7.42 -2.39 -0.02 -0.72 16 33 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 34 H 0.12 2.76 7.79 -2.39 -0.02 2.74 16 35 H 0.10 2.73 7.79 -2.39 -0.02 2.71 16 36 H 0.05 1.97 7.89 -2.39 -0.02 1.95 16 37 H 0.09 2.56 8.10 -2.39 -0.02 2.54 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -83.15 350.09 4.37 -78.77 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.98 Total: 10.32 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 5.50 Total: 17.42 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -4.03 Total: -100.49 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -0.10 Total: -53.02 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -83.15 4.37 -78.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075481415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.537 kcal (2) G-P(sol) polarization free energy of solvation -83.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds