Wall clock time and date at job start Tue Mar 31 2020 05:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47061 * 2 1 4 4 C 1.50706 * 109.46914 * 180.02562 * 3 2 1 5 5 O 1.21284 * 120.00084 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99947 * 180.02562 * 4 3 2 7 7 C 1.46927 * 120.62924 * 359.97438 * 6 4 3 8 8 C 1.53195 * 108.77620 * 126.41669 * 7 6 4 9 9 C 1.53046 * 109.31231 * 54.63367 * 8 7 6 10 10 C 1.53038 * 109.53777 * 298.63737 * 9 8 7 11 11 H 1.08998 * 109.49725 * 301.37820 * 10 9 8 12 12 C 1.50703 * 109.49761 * 181.31327 * 10 9 8 13 13 O 1.21296 * 120.00008 * 240.00036 * 12 10 9 14 14 N 1.34774 * 119.99849 * 60.00283 * 12 10 9 15 15 C 1.46497 * 119.99967 * 359.97438 * 14 12 10 16 16 C 1.37098 * 120.00018 * 179.97438 * 14 12 10 17 17 H 1.07996 * 120.00173 * 330.78592 * 16 14 12 18 18 C 1.38956 * 119.99746 * 150.78231 * 16 14 12 19 19 N 1.31406 * 120.00483 * 351.00400 * 18 16 14 20 20 Si 1.86804 * 119.99597 * 170.99780 * 18 16 14 21 21 H 1.48502 * 109.47065 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46839 * 120.00493 * 20 18 16 23 23 H 1.48498 * 109.46883 * 240.00147 * 20 18 16 24 24 C 1.46920 * 120.63191 * 180.02562 * 6 4 3 25 25 H 1.09003 * 109.47459 * 300.00308 * 1 2 3 26 26 H 1.09002 * 109.47391 * 60.00187 * 1 2 3 27 27 H 1.08999 * 109.47443 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47449 * 240.00249 * 2 1 3 29 29 H 1.08996 * 109.47286 * 120.00252 * 2 1 3 30 30 H 1.08996 * 109.47003 * 60.00189 * 3 2 1 31 31 H 1.08996 * 109.47387 * 299.99715 * 3 2 1 32 32 H 1.08998 * 109.58561 * 6.62952 * 7 6 4 33 33 H 1.09001 * 109.70776 * 246.27077 * 7 6 4 34 34 H 1.09004 * 109.49634 * 294.68811 * 8 7 6 35 35 H 1.08997 * 109.52429 * 174.60143 * 8 7 6 36 36 H 1.08995 * 109.46209 * 178.61380 * 9 8 7 37 37 H 1.09002 * 109.45633 * 58.65520 * 9 8 7 38 38 H 1.08996 * 109.47759 * 264.04212 * 15 14 12 39 39 H 1.09004 * 109.47215 * 144.04292 * 15 14 12 40 40 H 1.09005 * 109.47380 * 24.04894 * 15 14 12 41 41 H 0.96995 * 120.00847 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.58704 * 113.79525 * 24 6 4 43 43 H 1.08999 * 109.59035 * 353.37307 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2209 2.6097 -0.0002 7 6 3.5003 3.8901 0.0003 8 6 4.0089 4.7417 1.1678 9 6 5.5303 4.8766 1.0707 10 6 6.1741 3.4916 1.1666 11 1 5.8910 3.0233 2.1093 12 6 7.6736 3.6285 1.1034 13 8 8.2952 3.0852 0.2148 14 7 8.3238 4.3545 2.0342 15 6 7.5729 5.0111 3.1072 16 6 9.6880 4.4786 1.9770 17 1 10.2843 3.6895 1.5433 18 6 10.3033 5.6197 2.4770 19 7 9.5766 6.6521 2.8414 20 14 12.1638 5.6861 2.6313 21 1 12.7459 4.4050 2.1566 22 1 12.6893 6.8037 1.8066 23 1 12.5352 5.9025 4.0527 24 6 5.6900 2.6258 -0.0014 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 2.4321 3.7082 0.1188 33 1 3.6798 4.4133 -0.9389 34 1 3.7457 4.2613 2.1102 35 1 3.5524 5.7304 1.1234 36 1 5.8921 5.5026 1.8864 37 1 5.7941 5.3345 0.1173 38 1 7.3773 6.0475 2.8323 39 1 8.1555 4.9832 4.0281 40 1 6.6272 4.4909 3.2598 41 1 10.0061 7.4488 3.1901 42 1 6.0501 3.0450 -0.9410 43 1 6.0668 1.6098 0.1160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101515172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:14 Heat of formation + Delta-G solvation = -76.930462 kcal Electronic energy + Delta-G solvation = -23105.456324 eV Core-core repulsion = 19764.453159 eV Total energy + Delta-G solvation = -3341.003165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26730 -38.75984 -36.79219 -34.73114 -34.51142 -32.91067 -31.44675 -30.94014 -28.25991 -26.37720 -25.12039 -24.79665 -23.14890 -21.95695 -20.90453 -18.84482 -18.70860 -17.07101 -16.81541 -16.21004 -15.95911 -15.50876 -14.73612 -14.57520 -14.43566 -14.03761 -13.96173 -13.64924 -13.38372 -12.96724 -12.91006 -12.70837 -12.39958 -12.10044 -11.87430 -11.65876 -11.46421 -11.34441 -11.20646 -11.11244 -10.98451 -10.89787 -10.81401 -10.51473 -10.33839 -10.26305 -10.12496 -9.64532 -9.02060 -8.57719 -8.26668 -7.60004 -6.29421 -3.92757 2.72481 3.07409 3.15843 3.25945 3.33278 3.87604 4.15760 4.47771 4.67988 4.77266 4.83425 4.93795 5.00383 5.06615 5.18132 5.24902 5.29677 5.35215 5.43026 5.45406 5.53430 5.60674 5.71688 5.84170 5.92545 5.94395 5.98953 6.01961 6.14883 6.17979 6.26828 6.32005 6.47527 6.59091 6.69731 6.83551 7.18824 7.53045 7.57464 8.18191 8.28735 8.49555 9.19590 9.41928 9.98877 10.73853 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038215 B = 0.003698 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.528543 B = 7569.740353 C = 7974.004201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.510 3.490 5 O -0.543 6.543 6 N -0.612 5.612 7 C 0.105 3.895 8 C -0.132 4.132 9 C -0.123 4.123 10 C -0.110 4.110 11 H 0.082 0.918 12 C 0.458 3.542 13 O -0.586 6.586 14 N -0.445 5.445 15 C 0.107 3.893 16 C -0.305 4.305 17 H 0.095 0.905 18 C 0.033 3.967 19 N -0.884 5.884 20 Si 0.925 3.075 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.136 3.864 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.031 0.969 41 H 0.266 0.734 42 H 0.075 0.925 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.165 -2.369 -1.575 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.298 3.702 5 O -0.420 6.420 6 N -0.346 5.346 7 C -0.018 4.018 8 C -0.171 4.171 9 C -0.161 4.161 10 C -0.132 4.132 11 H 0.101 0.899 12 C 0.245 3.755 13 O -0.471 6.471 14 N -0.164 5.164 15 C -0.037 4.037 16 C -0.434 4.434 17 H 0.113 0.887 18 C -0.170 4.170 19 N -0.524 5.524 20 Si 0.752 3.248 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.207 1.207 24 C 0.013 3.987 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.476 -3.001 -1.911 17.835 hybrid contribution 0.883 0.515 0.315 1.070 sum -16.593 -2.486 -1.596 16.854 Atomic orbital electron populations 1.21791 0.95619 1.01846 1.01669 1.21292 0.95051 0.94891 1.03619 1.21739 0.92184 0.99933 1.04016 1.20732 0.90206 0.83258 0.75978 1.90700 1.70439 1.30961 1.49906 1.48245 1.07549 1.05774 1.73007 1.21786 0.96211 0.84400 0.99406 1.21932 0.96917 0.99875 0.98335 1.21793 0.93729 0.96388 1.04200 1.21458 0.95110 0.97025 0.99649 0.89947 1.19900 0.87710 0.84687 0.83170 1.90530 1.68628 1.51411 1.36495 1.43479 1.06756 1.44154 1.21999 1.21669 0.93078 0.97520 0.91390 1.19639 0.80901 1.03078 1.39739 0.88699 1.25387 1.00255 0.94310 0.97080 1.69925 1.35604 1.04066 1.42766 0.85876 0.82642 0.78539 0.77740 1.19230 1.20734 1.20727 1.21359 0.77095 1.02013 0.98189 0.92727 0.92769 0.92499 0.91268 0.91234 0.89031 0.89124 0.89970 0.91205 0.91523 0.90515 0.89282 0.91501 0.91263 0.92544 0.95046 0.92384 0.90699 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.15 0.37 -0.71 16 2 C -0.11 -1.08 5.22 -26.73 -0.14 -1.22 16 3 C -0.14 -1.33 4.05 -27.88 -0.11 -1.44 16 4 C 0.51 7.37 7.70 -10.98 -0.08 7.29 16 5 O -0.54 -10.16 15.40 5.55 0.09 -10.07 16 6 N -0.61 -8.70 2.97 -172.74 -0.51 -9.21 16 7 C 0.11 1.09 6.34 -3.71 -0.02 1.07 16 8 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 9 C -0.12 -1.91 4.76 -26.69 -0.13 -2.04 16 10 C -0.11 -2.04 1.86 -91.63 -0.17 -2.21 16 11 H 0.08 1.48 7.43 -51.93 -0.39 1.10 16 12 C 0.46 11.20 7.03 -10.99 -0.08 11.12 16 13 O -0.59 -16.46 15.69 5.54 0.09 -16.38 16 14 N -0.45 -11.36 3.00 -122.19 -0.37 -11.73 16 15 C 0.11 2.33 7.09 59.85 0.42 2.75 16 16 C -0.31 -8.57 9.15 -14.93 -0.14 -8.71 16 17 H 0.10 2.81 7.53 -52.49 -0.40 2.41 16 18 C 0.03 0.87 5.19 -17.47 -0.09 0.78 16 19 N -0.88 -23.40 10.88 55.50 0.60 -22.79 16 20 Si 0.93 20.92 29.56 -169.99 -5.03 15.90 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.14 2.44 5.07 -3.69 -0.02 2.42 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.09 0.71 7.69 -51.93 -0.40 0.31 16 31 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 32 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.46 4.61 -51.93 -0.24 1.22 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.56 6.34 -51.93 -0.33 1.23 16 39 H 0.06 1.29 7.70 -51.93 -0.40 0.89 16 40 H 0.03 0.57 5.58 -51.93 -0.29 0.28 16 41 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 42 H 0.07 1.42 7.96 -51.93 -0.41 1.00 16 43 H 0.09 1.96 7.01 -51.93 -0.36 1.59 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -32.97 335.48 -7.29 -40.26 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.87 Total: 1.49 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -0.35 Total: 7.48 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.28 Total: -43.73 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: 0.17 Total: -26.45 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.97 -7.29 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.669 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds