Wall clock time and date at job start Tue Mar 31 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47703 * 2 1 4 4 C 1.50691 * 109.47648 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99912 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00097 * 180.02562 * 4 3 2 7 7 C 1.46925 * 120.63002 * 0.02562 * 6 4 3 8 8 C 1.53189 * 108.77931 * 233.58950 * 7 6 4 9 9 C 1.53049 * 109.31173 * 305.36661 * 8 7 6 10 10 C 1.53042 * 109.53861 * 61.36348 * 9 8 7 11 11 H 1.09007 * 109.52318 * 58.60266 * 10 9 8 12 12 C 1.50695 * 109.50097 * 178.68273 * 10 9 8 13 13 O 1.21292 * 120.00015 * 119.83470 * 12 10 9 14 14 N 1.34779 * 119.99848 * 299.56499 * 12 10 9 15 15 C 1.46500 * 119.99863 * 0.27299 * 14 12 10 16 16 C 1.37102 * 119.99972 * 180.27258 * 14 12 10 17 17 H 1.07993 * 119.99921 * 22.82867 * 16 14 12 18 18 C 1.38948 * 119.99889 * 202.82808 * 16 14 12 19 19 N 1.31414 * 120.00211 * 11.02497 * 18 16 14 20 20 Si 1.86797 * 119.99954 * 191.02081 * 18 16 14 21 21 H 1.48504 * 109.47051 * 90.00030 * 20 18 16 22 22 H 1.48503 * 109.47353 * 210.00193 * 20 18 16 23 23 H 1.48505 * 109.47183 * 330.00440 * 20 18 16 24 24 C 1.46930 * 120.63160 * 180.02562 * 6 4 3 25 25 H 1.09003 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46715 * 300.00028 * 1 2 3 27 27 H 1.08993 * 109.46701 * 59.99916 * 1 2 3 28 28 H 1.09001 * 109.47121 * 240.00233 * 2 1 3 29 29 H 1.09001 * 109.47307 * 120.00070 * 2 1 3 30 30 H 1.09001 * 109.46642 * 59.99940 * 3 2 1 31 31 H 1.09001 * 109.46796 * 300.00383 * 3 2 1 32 32 H 1.08998 * 109.58784 * 353.37576 * 7 6 4 33 33 H 1.09004 * 109.58313 * 113.80342 * 7 6 4 34 34 H 1.08996 * 109.49724 * 65.31699 * 8 7 6 35 35 H 1.08997 * 109.50396 * 185.38411 * 8 7 6 36 36 H 1.09001 * 109.46047 * 301.34565 * 9 8 7 37 37 H 1.09000 * 109.46163 * 181.38426 * 9 8 7 38 38 H 1.09002 * 109.47349 * 93.03228 * 15 14 12 39 39 H 1.08997 * 109.46955 * 213.02434 * 15 14 12 40 40 H 1.08999 * 109.47226 * 333.02622 * 15 14 12 41 41 H 0.96994 * 119.99990 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.58594 * 6.62077 * 24 6 4 43 43 H 1.08999 * 109.58280 * 246.20227 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0015 6 7 4.2210 2.6096 -0.0002 7 6 3.5004 3.8900 0.0014 8 6 4.0079 4.7430 -1.1655 9 6 5.5294 4.8778 -1.0698 10 6 6.1732 3.4929 -1.1680 11 1 5.8891 3.0251 -2.1107 12 6 7.6726 3.6296 -1.1061 13 8 8.2948 3.0877 -0.2170 14 7 8.3228 4.3495 -2.0418 15 6 7.5712 5.0040 -3.1155 16 6 9.6876 4.4693 -1.9887 17 1 10.2743 3.7309 -1.4626 18 6 10.3157 5.5407 -2.6117 19 7 9.6030 6.5485 -3.0625 20 14 12.1732 5.5485 -2.8084 21 1 12.5372 4.9067 -4.0972 22 1 12.6665 6.9492 -2.7963 23 1 12.7929 4.7958 -1.6882 24 6 5.6902 2.6258 -0.0014 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9562 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 2.4321 3.7083 -0.1163 33 1 3.6832 4.4110 0.9413 34 1 3.7437 4.2638 -2.1082 35 1 3.5510 5.7315 -1.1194 36 1 5.7942 5.3345 -0.1161 37 1 5.8904 5.5047 -1.8851 38 1 7.3348 6.0269 -2.8223 39 1 8.1726 5.0165 -4.0245 40 1 6.6472 4.4557 -3.2987 41 1 10.0415 7.2966 -3.4971 42 1 6.0667 1.6098 -0.1209 43 1 6.0517 3.0434 0.9383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101515174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:17 Heat of formation + Delta-G solvation = -75.617289 kcal Electronic energy + Delta-G solvation = -23099.936098 eV Core-core repulsion = 19758.989876 eV Total energy + Delta-G solvation = -3340.946221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.26672 -38.76124 -36.79904 -34.75587 -34.51272 -32.90818 -31.44192 -30.94332 -28.26002 -26.39476 -25.12000 -24.78983 -23.14865 -21.95832 -20.90702 -18.84289 -18.70496 -17.07287 -16.82718 -16.21829 -15.95803 -15.51384 -14.71349 -14.55445 -14.45369 -14.03240 -13.96474 -13.66126 -13.38454 -12.96849 -12.91382 -12.70993 -12.39582 -12.09909 -11.86979 -11.67375 -11.48232 -11.34611 -11.21193 -11.11448 -10.93821 -10.89530 -10.81621 -10.51109 -10.36677 -10.24374 -10.13138 -9.64467 -9.01077 -8.57438 -8.26529 -7.68268 -6.31418 -3.88310 2.72610 3.07477 3.16534 3.25239 3.31326 3.87018 4.14521 4.47839 4.68088 4.77426 4.83490 4.93657 5.00167 5.06432 5.18068 5.24930 5.29815 5.35626 5.43042 5.45347 5.53315 5.60610 5.71725 5.84218 5.92089 5.94317 5.98995 6.01579 6.14934 6.17965 6.26557 6.33493 6.47781 6.59562 6.69850 6.86054 7.20480 7.53137 7.56800 8.13447 8.28862 8.48544 9.18794 9.42529 9.98185 10.72166 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037707 B = 0.003692 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.386627 B = 7582.160117 C = 7980.868614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.510 3.490 5 O -0.543 6.543 6 N -0.613 5.613 7 C 0.105 3.895 8 C -0.132 4.132 9 C -0.124 4.124 10 C -0.109 4.109 11 H 0.082 0.918 12 C 0.454 3.546 13 O -0.589 6.589 14 N -0.445 5.445 15 C 0.112 3.888 16 C -0.305 4.305 17 H 0.098 0.902 18 C 0.030 3.970 19 N -0.885 5.885 20 Si 0.927 3.073 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.136 3.864 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.028 0.972 41 H 0.267 0.733 42 H 0.095 0.905 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.141 -2.215 1.861 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.298 3.702 5 O -0.420 6.420 6 N -0.346 5.346 7 C -0.018 4.018 8 C -0.171 4.171 9 C -0.161 4.161 10 C -0.131 4.131 11 H 0.100 0.900 12 C 0.241 3.759 13 O -0.474 6.474 14 N -0.163 5.163 15 C -0.031 4.031 16 C -0.433 4.433 17 H 0.116 0.884 18 C -0.173 4.173 19 N -0.525 5.525 20 Si 0.753 3.247 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.194 1.194 24 C 0.014 3.986 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.449 -2.848 2.182 17.814 hybrid contribution 0.877 0.475 -0.352 1.057 sum -16.573 -2.373 1.830 16.842 Atomic orbital electron populations 1.21791 0.95619 1.01847 1.01667 1.21293 0.95052 0.94891 1.03620 1.21737 0.92190 0.99936 1.04014 1.20726 0.90203 0.83261 0.75983 1.90699 1.70441 1.30963 1.49895 1.48251 1.07553 1.05774 1.73014 1.21793 0.96219 0.84391 0.99394 1.21929 0.96904 0.99868 0.98357 1.21786 0.93755 0.96457 1.04131 1.21427 0.95064 0.96976 0.99654 0.89966 1.19820 0.87757 0.84958 0.83379 1.90526 1.68568 1.51596 1.36683 1.43543 1.06752 1.44132 1.21870 1.21623 0.93177 0.96492 0.91838 1.19681 0.80939 1.08577 1.34083 0.88386 1.25330 1.00360 0.94282 0.97291 1.69980 1.35883 1.07459 1.39151 0.85915 0.82482 0.77392 0.78866 1.20406 1.20956 1.19362 1.21344 0.77083 1.02009 0.98206 0.92497 0.92769 0.92728 0.91233 0.91267 0.89121 0.89038 0.89953 0.91208 0.91513 0.90526 0.91521 0.89338 0.91940 0.91624 0.95384 0.92310 0.88692 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.11 -1.08 5.22 -26.73 -0.14 -1.22 16 3 C -0.14 -1.33 4.05 -27.89 -0.11 -1.44 16 4 C 0.51 7.38 7.70 -10.99 -0.08 7.29 16 5 O -0.54 -10.17 15.40 5.56 0.09 -10.08 16 6 N -0.61 -8.70 2.97 -172.78 -0.51 -9.22 16 7 C 0.11 1.09 6.34 -3.71 -0.02 1.07 16 8 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 9 C -0.12 -1.91 4.79 -26.68 -0.13 -2.04 16 10 C -0.11 -2.02 1.86 -91.67 -0.17 -2.19 16 11 H 0.08 1.49 7.40 -51.93 -0.38 1.10 16 12 C 0.45 11.08 7.03 -10.99 -0.08 11.00 16 13 O -0.59 -16.52 15.62 5.55 0.09 -16.43 16 14 N -0.44 -11.36 3.02 -122.20 -0.37 -11.72 16 15 C 0.11 2.46 7.05 59.85 0.42 2.88 16 16 C -0.30 -8.54 9.28 -14.93 -0.14 -8.68 16 17 H 0.10 2.90 7.41 -52.49 -0.39 2.51 16 18 C 0.03 0.80 5.13 -17.47 -0.09 0.71 16 19 N -0.88 -23.30 10.61 55.50 0.59 -22.71 16 20 Si 0.93 20.88 29.57 -169.99 -5.03 15.86 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 24 C 0.14 2.45 5.06 -3.72 -0.02 2.43 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 31 H 0.09 0.71 7.69 -51.93 -0.40 0.31 16 32 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.45 4.60 -51.93 -0.24 1.21 16 38 H 0.06 1.39 6.48 -51.93 -0.34 1.06 16 39 H 0.07 1.53 7.13 -51.93 -0.37 1.16 16 40 H 0.03 0.51 5.79 -51.93 -0.30 0.21 16 41 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 42 H 0.09 1.96 7.01 -51.93 -0.36 1.60 16 43 H 0.07 1.41 7.95 -51.93 -0.41 1.00 16 LS Contribution 334.84 15.07 5.05 5.05 Total: -1.00 -32.82 334.84 -7.31 -40.13 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.85 Total: 1.67 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -0.35 Total: 7.47 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.29 Total: -43.65 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: 0.17 Total: -26.52 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.82 -7.31 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.486 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds