Wall clock time and date at job start Tue Mar 31 2020 06:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46739 * 2 1 4 4 N 1.46507 * 109.46901 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00250 * 265.18801 * 4 3 2 6 6 H 1.08007 * 119.99750 * 143.68475 * 5 4 3 7 7 C 1.38948 * 120.00052 * 323.68799 * 5 4 3 8 8 N 1.31415 * 119.99912 * 161.04878 * 7 5 4 9 9 Si 1.86800 * 120.00067 * 341.04567 * 7 5 4 10 10 H 1.48498 * 109.46714 * 95.37372 * 9 7 5 11 11 H 1.48502 * 109.47221 * 215.37548 * 9 7 5 12 12 H 1.48501 * 109.46869 * 335.37644 * 9 7 5 13 13 C 1.34777 * 119.99601 * 85.18595 * 4 3 2 14 14 O 1.21288 * 120.00098 * 183.36944 * 13 4 3 15 15 C 1.50703 * 120.00064 * 3.37365 * 13 4 3 16 16 H 1.08994 * 110.88765 * 312.43215 * 15 13 4 17 17 C 1.55157 * 111.03480 * 76.33441 * 15 13 4 18 18 C 1.54336 * 103.01974 * 153.39533 * 17 15 13 19 19 N 1.47015 * 107.26559 * 338.14048 * 18 17 15 20 20 C 1.34784 * 125.64992 * 178.84945 * 19 18 17 21 21 O 1.21275 * 120.00204 * 179.68893 * 20 19 18 22 22 C 1.50704 * 119.99687 * 359.69116 * 20 19 18 23 23 C 1.52998 * 109.47174 * 179.97438 * 22 20 19 24 24 C 1.47422 * 108.70499 * 358.58420 * 19 18 17 25 25 H 1.09000 * 109.47551 * 300.00100 * 1 2 3 26 26 H 1.08999 * 109.46793 * 60.00230 * 1 2 3 27 27 H 1.08996 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47030 * 239.99845 * 2 1 3 29 29 H 1.08999 * 109.46793 * 119.99770 * 2 1 3 30 30 H 1.09000 * 109.47486 * 60.00124 * 3 2 1 31 31 H 1.08999 * 109.47290 * 299.99466 * 3 2 1 32 32 H 0.96998 * 119.99922 * 179.97438 * 8 7 5 33 33 H 1.09008 * 110.72139 * 271.95317 * 17 15 13 34 34 H 1.08997 * 110.72639 * 35.22665 * 17 15 13 35 35 H 1.08997 * 109.99087 * 218.66129 * 18 17 15 36 36 H 1.09004 * 109.78002 * 97.49547 * 18 17 15 37 37 H 1.09002 * 109.47212 * 60.00229 * 22 20 19 38 38 H 1.09000 * 109.47355 * 299.99993 * 22 20 19 39 39 H 1.09000 * 109.47003 * 300.00245 * 23 22 20 40 40 H 1.08998 * 109.46925 * 59.99539 * 23 22 20 41 41 H 1.08999 * 109.47203 * 180.02562 * 23 22 20 42 42 H 1.08998 * 110.36851 * 143.19090 * 24 19 18 43 43 H 1.09004 * 110.36730 * 265.52049 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5423 1.1839 6 1 5.1127 0.9980 1.3213 7 6 3.6973 2.3437 2.2065 8 7 4.1161 2.1671 3.4396 9 14 2.4395 3.6721 1.8286 10 1 1.0733 3.1444 2.0743 11 1 2.6815 4.8466 2.7045 12 1 2.5638 4.0811 0.4064 13 6 4.1793 1.3444 -1.1622 14 8 5.3906 1.2829 -1.1575 15 6 3.4282 1.3113 -2.4683 16 1 2.6016 0.6023 -2.4234 17 6 2.9263 2.7267 -2.8581 18 6 2.8375 2.6526 -4.3972 19 7 3.7223 1.5624 -4.8332 20 6 3.9077 1.1630 -6.1071 21 8 4.6696 0.2519 -6.3521 22 6 3.1680 1.8486 -7.2269 23 6 3.5559 1.2086 -8.5613 24 6 4.3782 0.9827 -3.6470 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7724 2.7267 4.1533 33 1 1.9465 2.9222 -2.4220 34 1 3.6441 3.4882 -2.5532 35 1 3.1666 3.5948 -4.8352 36 1 1.8116 2.4400 -4.6977 37 1 3.4308 2.9064 -7.2417 38 1 2.0944 1.7431 -7.0714 39 1 4.6296 1.3145 -8.7166 40 1 3.2936 0.1508 -8.5467 41 1 3.0213 1.7048 -9.3713 42 1 4.4825 -0.0963 -3.7605 43 1 5.3529 1.4445 -3.4887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130171203.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:02 Heat of formation + Delta-G solvation = -67.340969 kcal Electronic energy + Delta-G solvation = -23323.088857 eV Core-core repulsion = 19982.501524 eV Total energy + Delta-G solvation = -3340.587333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.26436 -39.01077 -36.97499 -35.57829 -33.07447 -32.88107 -31.77514 -31.29665 -29.06522 -26.25137 -25.77206 -24.47681 -22.71379 -21.86522 -21.27722 -19.13331 -18.71904 -17.22487 -17.10610 -16.92049 -16.00145 -15.51618 -15.22378 -14.56448 -14.40574 -14.13235 -13.84884 -13.45742 -13.39044 -13.17826 -12.90228 -12.52478 -12.39699 -12.31587 -12.26795 -11.94554 -11.92529 -11.74022 -11.39965 -11.33513 -11.18808 -11.01709 -10.86648 -10.73287 -10.48355 -10.06774 -9.84901 -9.80736 -9.13798 -8.70285 -8.48380 -7.82682 -6.42368 -4.01101 2.64479 2.96052 2.96984 3.14104 3.17114 3.56310 4.07681 4.25035 4.40794 4.58309 4.81014 4.84282 4.91248 4.95396 5.03511 5.26112 5.26758 5.34658 5.43138 5.43998 5.50776 5.57090 5.60172 5.64802 5.75606 5.77985 5.84637 5.97096 6.04432 6.06028 6.10920 6.14530 6.22981 6.23981 6.39727 6.48070 6.70713 7.49057 7.54255 8.17611 8.23376 8.45157 8.90459 9.27055 9.69704 10.69703 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.004635 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.209835 B = 6039.965868 C = 6273.003147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.088 3.912 4 N -0.462 5.462 5 C -0.314 4.314 6 H 0.107 0.893 7 C 0.059 3.941 8 N -0.865 5.865 9 Si 0.879 3.121 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.264 1.264 13 C 0.477 3.523 14 O -0.560 6.560 15 C -0.122 4.122 16 H 0.097 0.903 17 C -0.122 4.122 18 C 0.103 3.897 19 N -0.620 5.620 20 C 0.524 3.476 21 O -0.543 6.543 22 C -0.139 4.139 23 C -0.137 4.137 24 C 0.125 3.875 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.274 0.726 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.809 2.334 -15.638 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.035 4.035 4 N -0.182 5.182 5 C -0.442 4.442 6 H 0.125 0.875 7 C -0.147 4.147 8 N -0.502 5.502 9 Si 0.707 3.293 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.188 1.188 13 C 0.264 3.736 14 O -0.441 6.441 15 C -0.144 4.144 16 H 0.116 0.884 17 C -0.160 4.160 18 C -0.020 4.020 19 N -0.355 5.355 20 C 0.313 3.687 21 O -0.420 6.420 22 C -0.179 4.179 23 C -0.194 4.194 24 C 0.003 3.997 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.756 1.851 -15.621 18.510 hybrid contribution -0.921 0.859 0.229 1.280 sum -10.677 2.709 -15.392 18.928 Atomic orbital electron populations 1.21731 0.96040 1.01422 1.01517 1.21922 0.95056 0.97742 1.02993 1.21979 0.83244 0.96797 1.01495 1.43697 1.03610 1.65072 1.05871 1.19088 1.09276 1.27780 0.88017 0.87540 1.25348 0.97558 0.96969 0.94812 1.69723 1.43375 1.37837 0.99248 0.86937 0.80748 0.82304 0.79271 1.20224 1.21569 1.18819 1.19728 0.87703 0.82202 0.83979 1.90577 1.13857 1.53106 1.86605 1.22464 0.99246 0.98123 0.94586 0.88450 1.22672 1.02887 0.97071 0.93407 1.22062 0.94145 0.90292 0.95471 1.48614 1.45149 1.35460 1.06267 1.20428 0.82469 0.83512 0.82316 1.90705 1.37901 1.30397 1.83033 1.21610 1.01104 1.01128 0.94080 1.21533 1.02256 1.01176 0.94464 1.22065 0.96425 0.99682 0.81559 0.92715 0.93072 0.92755 0.92220 0.90586 0.91009 0.91850 0.91572 0.89438 0.89708 0.91134 0.91197 0.89082 0.89085 0.91978 0.91993 0.92181 0.90296 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.54 16 2 C -0.14 -2.25 6.10 -26.73 -0.16 -2.41 16 3 C 0.09 1.65 3.65 -4.04 -0.01 1.64 16 4 N -0.46 -10.64 2.23 -114.81 -0.26 -10.89 16 5 C -0.31 -8.67 9.44 -14.94 -0.14 -8.81 16 6 H 0.11 3.35 7.86 -52.48 -0.41 2.93 16 7 C 0.06 1.58 5.35 -17.47 -0.09 1.48 16 8 N -0.87 -24.63 13.96 55.50 0.77 -23.85 16 9 Si 0.88 19.72 24.75 -169.99 -4.21 15.51 16 10 H -0.27 -5.73 6.71 56.52 0.38 -5.35 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.26 -5.65 7.08 56.52 0.40 -5.25 16 13 C 0.48 10.57 6.90 -10.98 -0.08 10.49 16 14 O -0.56 -14.76 15.52 5.55 0.09 -14.67 16 15 C -0.12 -1.99 2.40 -89.62 -0.22 -2.21 16 16 H 0.10 1.43 6.28 -51.93 -0.33 1.10 16 17 C -0.12 -1.62 5.94 -24.89 -0.15 -1.77 16 18 C 0.10 1.09 6.49 -3.06 -0.02 1.07 16 19 N -0.62 -8.55 3.33 -170.52 -0.57 -9.12 16 20 C 0.52 7.33 7.85 -10.98 -0.09 7.24 16 21 O -0.54 -9.80 16.24 5.56 0.09 -9.71 16 22 C -0.14 -1.28 5.61 -27.88 -0.16 -1.43 16 23 C -0.14 -1.24 9.20 37.16 0.34 -0.90 16 24 C 0.12 2.09 6.10 -2.53 -0.02 2.07 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.91 6.87 -51.93 -0.36 0.55 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.07 1.46 3.09 -51.93 -0.16 1.30 16 31 H 0.06 0.99 5.01 -51.93 -0.26 0.73 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.09 1.00 6.57 -51.92 -0.34 0.66 16 34 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 43 H 0.09 1.64 7.28 -51.93 -0.38 1.26 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -33.16 338.69 -6.27 -39.43 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.87 Total: 3.25 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -0.42 Total: 4.94 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.05 Total: -43.87 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.18 Total: -24.38 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.21 Total: 15.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.16 -6.27 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130171203.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.910 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds