Wall clock time and date at job start Tue Mar 31 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47231 * 2 1 4 4 H 1.08997 * 109.47183 * 54.59998 * 3 2 1 5 5 C 1.50700 * 109.47371 * 174.60173 * 3 2 1 6 6 O 1.21279 * 120.00022 * 98.44839 * 5 3 2 7 7 N 1.34775 * 119.99782 * 278.45054 * 5 3 2 8 8 C 1.46494 * 120.00432 * 185.16686 * 7 5 3 9 9 C 1.53003 * 109.47505 * 85.38265 * 8 7 5 10 10 C 1.46504 * 119.99955 * 5.15992 * 7 5 3 11 11 C 1.50704 * 109.46950 * 95.07906 * 10 7 5 12 12 H 1.08004 * 120.00155 * 0.02562 * 11 10 7 13 13 C 1.37877 * 120.00096 * 179.97438 * 11 10 7 14 14 N 1.31513 * 119.99977 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00017 * 359.97438 * 13 11 10 16 16 H 1.48511 * 109.46759 * 90.00213 * 15 13 11 17 17 H 1.48498 * 109.47550 * 209.99959 * 15 13 11 18 18 H 1.48502 * 109.47361 * 330.00508 * 15 13 11 19 19 N 1.46504 * 109.46794 * 294.60003 * 3 2 1 20 20 C 1.46760 * 124.34872 * 120.00149 * 19 3 2 21 21 C 1.54486 * 105.47116 * 197.01359 * 20 19 3 22 22 C 1.54623 * 101.76583 * 334.58345 * 21 20 19 23 23 C 1.34416 * 124.34941 * 299.99588 * 19 3 2 24 24 O 1.21281 * 124.94228 * 359.63544 * 23 19 3 25 25 H 1.09000 * 109.47054 * 299.99801 * 1 2 3 26 26 H 1.08998 * 109.46903 * 60.00384 * 1 2 3 27 27 H 1.09003 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47618 * 239.99689 * 2 1 3 29 29 H 1.09000 * 109.47592 * 119.99896 * 2 1 3 30 30 H 1.08996 * 109.47328 * 205.39016 * 8 7 5 31 31 H 1.09010 * 109.46516 * 325.38464 * 8 7 5 32 32 H 1.08997 * 109.47053 * 304.91617 * 9 8 7 33 33 H 1.09005 * 109.46569 * 64.91265 * 9 8 7 34 34 H 1.08998 * 109.47045 * 184.91452 * 9 8 7 35 35 H 1.08997 * 109.47130 * 215.07593 * 10 7 5 36 36 H 1.08994 * 109.47427 * 335.08271 * 10 7 5 37 37 H 0.96997 * 119.99787 * 180.02562 * 14 13 11 38 38 H 1.08995 * 110.24794 * 78.01574 * 20 19 3 39 39 H 1.08997 * 110.24331 * 316.00872 * 20 19 3 40 40 H 1.09006 * 110.96631 * 92.70085 * 21 20 19 41 41 H 1.09001 * 110.96780 * 216.46080 * 21 20 19 42 42 H 1.08994 * 110.48853 * 143.47522 * 22 21 20 43 43 H 1.09005 * 110.48700 * 265.99029 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9835 0.8376 5 6 3.5411 1.4447 0.1337 6 8 4.2374 1.5672 -0.8517 7 7 4.1096 1.3104 1.3482 8 6 5.5628 1.4256 1.4937 9 6 5.9446 2.8990 1.6493 10 6 3.2743 1.0493 2.5232 11 6 3.2225 -0.4342 2.7830 12 1 3.7585 -1.1146 2.1377 13 6 2.4917 -0.9230 3.8451 14 7 2.4469 -2.2176 4.0721 15 14 1.5664 0.2537 4.9624 16 1 0.1938 0.4612 4.4347 17 1 1.4895 -0.3195 6.3302 18 1 2.2801 1.5551 5.0105 19 7 1.6607 2.0946 -1.2559 20 6 0.8164 3.2917 -1.3454 21 6 0.3379 3.3497 -2.8131 22 6 1.4600 2.5744 -3.5415 23 6 2.0412 1.6733 -2.4743 24 8 2.7472 0.7104 -2.6872 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 5.8847 0.8717 2.3754 31 1 6.0500 1.0155 0.6090 32 1 5.5466 3.4682 0.8092 33 1 5.5287 3.2857 2.5797 34 1 7.0303 2.9928 1.6699 35 1 3.6987 1.5554 3.3903 36 1 2.2661 1.4219 2.3423 37 1 1.9324 -2.5615 4.8191 38 1 1.3969 4.1816 -1.1024 39 1 -0.0373 3.2022 -0.6736 40 1 -0.6226 2.8478 -2.9303 41 1 0.2836 4.3799 -3.1652 42 1 1.0465 1.9817 -4.3574 43 1 2.2176 3.2624 -3.9167 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133431069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:40 Heat of formation + Delta-G solvation = -67.852029 kcal Electronic energy + Delta-G solvation = -24213.543292 eV Core-core repulsion = 20872.933797 eV Total energy + Delta-G solvation = -3340.609494 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48529 -38.75170 -35.97862 -35.23155 -34.46708 -32.68489 -30.78301 -30.60489 -27.76199 -27.40232 -26.59566 -22.93172 -22.51754 -21.79624 -21.62067 -19.46615 -17.89948 -17.07923 -16.89122 -16.41364 -15.85455 -15.26898 -14.91559 -14.46600 -14.13342 -13.80552 -13.52928 -13.39465 -13.07866 -12.96762 -12.69386 -12.59460 -12.53321 -12.34772 -12.14870 -11.68099 -11.62768 -11.48979 -11.33530 -11.00137 -10.96809 -10.78929 -10.64113 -10.44583 -10.35420 -10.29333 -9.61852 -9.27870 -9.10105 -8.74448 -8.20175 -7.71021 -6.24526 -4.25488 3.02305 3.12844 3.17572 3.21232 3.23386 3.40124 3.98658 4.22667 4.50614 4.51596 4.78958 5.03980 5.11212 5.19676 5.35497 5.44907 5.48869 5.59368 5.62184 5.65629 5.76559 5.79525 5.82338 5.83208 5.94832 6.00592 6.20650 6.23774 6.33877 6.45679 6.51061 6.54074 6.57797 6.67899 6.91672 7.07310 7.36012 7.43128 7.55094 8.12684 8.41059 8.65250 8.82154 8.99490 9.34293 10.87638 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.006777 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.736848 B = 4130.826743 C = 4889.719413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.148 4.148 3 C 0.151 3.849 4 H 0.103 0.897 5 C 0.506 3.494 6 O -0.540 6.540 7 N -0.592 5.592 8 C 0.117 3.883 9 C -0.162 4.162 10 C 0.206 3.794 11 C -0.539 4.539 12 H 0.081 0.919 13 C 0.079 3.921 14 N -0.886 5.886 15 Si 0.867 3.133 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.264 1.264 19 N -0.610 5.610 20 C 0.103 3.897 21 C -0.129 4.129 22 C -0.155 4.155 23 C 0.520 3.480 24 O -0.504 6.504 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.028 0.972 37 H 0.267 0.733 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.538 12.910 -7.421 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.186 4.186 3 C 0.045 3.955 4 H 0.121 0.879 5 C 0.292 3.708 6 O -0.417 6.417 7 N -0.324 5.324 8 C -0.006 4.006 9 C -0.220 4.220 10 C 0.085 3.915 11 C -0.577 4.577 12 H 0.099 0.901 13 C -0.125 4.125 14 N -0.523 5.523 15 Si 0.693 3.307 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.189 1.189 19 N -0.346 5.346 20 C -0.020 4.020 21 C -0.167 4.167 22 C -0.196 4.196 23 C 0.307 3.693 24 O -0.377 6.377 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.828 12.264 -7.851 15.341 hybrid contribution -0.604 0.566 0.961 1.268 sum -5.432 12.830 -6.889 15.542 Atomic orbital electron populations 1.21632 0.95758 1.01546 1.00537 1.22097 0.96010 0.93867 1.06605 1.20904 0.92771 0.96363 0.85446 0.87880 1.20636 0.90350 0.76748 0.83090 1.90661 1.64059 1.50103 1.36878 1.47901 1.07100 1.69459 1.07956 1.21219 0.81088 0.95712 1.02598 1.22112 1.00736 0.97696 1.01469 1.19860 0.90069 0.97820 0.83771 1.21349 1.32159 0.90257 1.13977 0.90092 1.24871 0.95909 0.94906 0.96857 1.69891 1.40640 1.11998 1.29802 0.86989 0.80933 0.81811 0.80925 1.19741 1.20845 1.18875 1.48078 1.51632 1.28940 1.05914 1.22040 0.94386 0.87955 0.97633 1.22553 0.98541 1.01463 0.94146 1.22319 0.99276 0.99596 0.98377 1.20598 0.79803 0.84914 0.83970 1.90723 1.35702 1.27820 1.83429 0.93025 0.93803 0.92582 0.90794 0.86013 0.90048 0.91068 0.92984 0.92888 0.92286 0.94973 0.95403 0.92308 0.91593 0.90498 0.90120 0.89554 0.88602 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.80 37.16 0.36 -1.86 16 2 C -0.15 -2.91 5.25 -26.73 -0.14 -3.05 16 3 C 0.15 2.80 1.84 -69.08 -0.13 2.67 16 4 H 0.10 1.74 6.33 -51.93 -0.33 1.41 16 5 C 0.51 10.90 6.80 -10.99 -0.07 10.82 16 6 O -0.54 -13.07 13.67 -16.15 -0.22 -13.29 16 7 N -0.59 -12.42 2.47 -175.06 -0.43 -12.85 16 8 C 0.12 2.21 6.14 -4.04 -0.02 2.19 16 9 C -0.16 -2.54 10.21 37.16 0.38 -2.16 16 10 C 0.21 4.46 3.82 -5.19 -0.02 4.44 16 11 C -0.54 -13.82 7.69 -34.44 -0.26 -14.08 16 12 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 13 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.89 -25.17 13.96 55.43 0.77 -24.40 16 15 Si 0.87 19.13 27.47 -169.99 -4.67 14.46 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 19 N -0.61 -9.82 2.24 -166.16 -0.37 -10.19 16 20 C 0.10 1.13 7.30 -3.12 -0.02 1.11 16 21 C -0.13 -1.11 7.18 -25.10 -0.18 -1.29 16 22 C -0.16 -1.82 6.86 -26.74 -0.18 -2.00 16 23 C 0.52 9.19 6.76 -10.86 -0.07 9.12 16 24 O -0.50 -11.42 14.63 -16.15 -0.24 -11.66 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.63 7.76 -51.93 -0.40 0.23 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.62 6.64 -51.93 -0.34 1.28 16 29 H 0.12 2.77 5.25 -51.93 -0.27 2.50 16 30 H 0.08 1.51 8.04 -51.93 -0.42 1.10 16 31 H 0.07 1.42 7.50 -51.92 -0.39 1.03 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.69 7.16 -51.93 -0.37 0.32 16 36 H 0.03 0.57 5.13 -51.93 -0.27 0.31 16 37 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -32.90 340.07 -7.53 -40.43 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.03 Total: 4.50 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.47 Total: 7.87 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.03 Total: -47.44 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.46 Total: -24.95 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.67 Total: 14.46 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.90 -7.53 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133431069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.421 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds