Wall clock time and date at job start Tue Mar 31 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47231 * 2 1 4 4 H 1.08997 * 109.47183 * 54.59998 * 3 2 1 5 5 C 1.50700 * 109.47371 * 174.60173 * 3 2 1 6 6 O 1.21279 * 120.00022 * 98.44839 * 5 3 2 7 7 N 1.34775 * 119.99782 * 278.45054 * 5 3 2 8 8 C 1.46494 * 120.00432 * 185.16686 * 7 5 3 9 9 C 1.53003 * 109.47505 * 85.38265 * 8 7 5 10 10 C 1.46504 * 119.99955 * 5.15992 * 7 5 3 11 11 C 1.50704 * 109.46950 * 95.07906 * 10 7 5 12 12 H 1.08004 * 120.00155 * 0.02562 * 11 10 7 13 13 C 1.37877 * 120.00096 * 179.97438 * 11 10 7 14 14 N 1.31513 * 119.99977 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00017 * 359.97438 * 13 11 10 16 16 H 1.48511 * 109.46759 * 90.00213 * 15 13 11 17 17 H 1.48498 * 109.47550 * 209.99959 * 15 13 11 18 18 H 1.48502 * 109.47361 * 330.00508 * 15 13 11 19 19 N 1.46504 * 109.46794 * 294.60003 * 3 2 1 20 20 C 1.46760 * 124.34872 * 120.00149 * 19 3 2 21 21 C 1.54486 * 105.47116 * 197.01359 * 20 19 3 22 22 C 1.54623 * 101.76583 * 334.58345 * 21 20 19 23 23 C 1.34416 * 124.34941 * 299.99588 * 19 3 2 24 24 O 1.21281 * 124.94228 * 359.63544 * 23 19 3 25 25 H 1.09000 * 109.47054 * 299.99801 * 1 2 3 26 26 H 1.08998 * 109.46903 * 60.00384 * 1 2 3 27 27 H 1.09003 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47618 * 239.99689 * 2 1 3 29 29 H 1.09000 * 109.47592 * 119.99896 * 2 1 3 30 30 H 1.08996 * 109.47328 * 205.39016 * 8 7 5 31 31 H 1.09010 * 109.46516 * 325.38464 * 8 7 5 32 32 H 1.08997 * 109.47053 * 304.91617 * 9 8 7 33 33 H 1.09005 * 109.46569 * 64.91265 * 9 8 7 34 34 H 1.08998 * 109.47045 * 184.91452 * 9 8 7 35 35 H 1.08997 * 109.47130 * 215.07593 * 10 7 5 36 36 H 1.08994 * 109.47427 * 335.08271 * 10 7 5 37 37 H 0.96997 * 119.99787 * 180.02562 * 14 13 11 38 38 H 1.08995 * 110.24794 * 78.01574 * 20 19 3 39 39 H 1.08997 * 110.24331 * 316.00872 * 20 19 3 40 40 H 1.09006 * 110.96631 * 92.70085 * 21 20 19 41 41 H 1.09001 * 110.96780 * 216.46080 * 21 20 19 42 42 H 1.08994 * 110.48853 * 143.47522 * 22 21 20 43 43 H 1.09005 * 110.48700 * 265.99029 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9835 0.8376 5 6 3.5411 1.4447 0.1337 6 8 4.2374 1.5672 -0.8517 7 7 4.1096 1.3104 1.3482 8 6 5.5628 1.4256 1.4937 9 6 5.9446 2.8990 1.6493 10 6 3.2743 1.0493 2.5232 11 6 3.2225 -0.4342 2.7830 12 1 3.7585 -1.1146 2.1377 13 6 2.4917 -0.9230 3.8451 14 7 2.4469 -2.2176 4.0721 15 14 1.5664 0.2537 4.9624 16 1 0.1938 0.4612 4.4347 17 1 1.4895 -0.3195 6.3302 18 1 2.2801 1.5551 5.0105 19 7 1.6607 2.0946 -1.2559 20 6 0.8164 3.2917 -1.3454 21 6 0.3379 3.3497 -2.8131 22 6 1.4600 2.5744 -3.5415 23 6 2.0412 1.6733 -2.4743 24 8 2.7472 0.7104 -2.6872 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 5.8847 0.8717 2.3754 31 1 6.0500 1.0155 0.6090 32 1 5.5466 3.4682 0.8092 33 1 5.5287 3.2857 2.5797 34 1 7.0303 2.9928 1.6699 35 1 3.6987 1.5554 3.3903 36 1 2.2661 1.4219 2.3423 37 1 1.9324 -2.5615 4.8191 38 1 1.3969 4.1816 -1.1024 39 1 -0.0373 3.2022 -0.6736 40 1 -0.6226 2.8478 -2.9303 41 1 0.2836 4.3799 -3.1652 42 1 1.0465 1.9817 -4.3574 43 1 2.2176 3.2624 -3.9167 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133431069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:40 Heat of formation + Delta-G solvation = -88.597688 kcal Electronic energy + Delta-G solvation = -24214.442891 eV Core-core repulsion = 20872.933797 eV Total energy + Delta-G solvation = -3341.509094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.85274 -40.26917 -37.32925 -36.98125 -35.81970 -34.63485 -32.23248 -31.89006 -29.59826 -28.39730 -27.95808 -24.56999 -24.24034 -23.08780 -22.63330 -20.91206 -19.44885 -18.97936 -18.36403 -17.86755 -17.06639 -16.76190 -16.40498 -16.09657 -15.70637 -15.19216 -14.95950 -14.72194 -14.53172 -14.34491 -14.19538 -13.90060 -13.85041 -13.71162 -13.31053 -13.23086 -13.18493 -12.86399 -12.61220 -12.44691 -12.35841 -12.12158 -12.03504 -11.92193 -11.89032 -11.73963 -11.62109 -10.82468 -10.76120 -10.49234 -9.58202 -9.42972 -8.27055 -6.34457 1.41958 1.44596 1.53952 1.62398 1.74941 1.96168 2.36989 2.47088 3.05886 3.46226 3.62918 3.72043 3.92465 4.00537 4.11849 4.15592 4.29954 4.34456 4.43339 4.48041 4.53541 4.68246 4.71945 4.73379 4.79481 4.81817 4.88679 4.90263 4.99048 5.12113 5.13547 5.20679 5.23964 5.28064 5.39732 5.45754 5.60428 5.75504 6.18710 6.33396 6.60539 6.70050 7.21207 7.31816 7.42804 8.89317 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.006777 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.736848 B = 4130.826743 C = 4889.719413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.140 4.140 3 C 0.155 3.845 4 H 0.129 0.871 5 C 0.495 3.505 6 O -0.573 6.573 7 N -0.597 5.597 8 C 0.109 3.891 9 C -0.146 4.146 10 C 0.215 3.785 11 C -0.536 4.536 12 H 0.022 0.978 13 C 0.021 3.979 14 N -0.942 5.942 15 Si 0.938 3.062 16 H -0.253 1.253 17 H -0.289 1.289 18 H -0.235 1.235 19 N -0.611 5.611 20 C 0.091 3.909 21 C -0.111 4.111 22 C -0.148 4.148 23 C 0.499 3.501 24 O -0.572 6.572 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.268 0.732 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.135 17.070 -6.816 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.179 4.179 3 C 0.048 3.952 4 H 0.147 0.853 5 C 0.283 3.717 6 O -0.453 6.453 7 N -0.328 5.328 8 C -0.014 4.014 9 C -0.204 4.204 10 C 0.094 3.906 11 C -0.574 4.574 12 H 0.040 0.960 13 C -0.178 4.178 14 N -0.581 5.581 15 Si 0.760 3.240 16 H -0.177 1.177 17 H -0.215 1.215 18 H -0.158 1.158 19 N -0.345 5.345 20 C -0.030 4.030 21 C -0.149 4.149 22 C -0.188 4.188 23 C 0.288 3.712 24 O -0.450 6.450 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.140 0.860 42 H 0.125 0.875 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.445 16.487 -7.250 19.489 hybrid contribution 0.318 -0.846 0.708 1.147 sum -7.127 15.641 -6.543 18.392 Atomic orbital electron populations 1.21569 0.92534 1.01983 1.02401 1.21895 0.98711 0.94330 1.02949 1.20768 0.90544 0.96041 0.87873 0.85349 1.21319 0.91881 0.75922 0.82612 1.90638 1.65205 1.51627 1.37808 1.48048 1.07874 1.69022 1.07885 1.21363 0.80250 0.98342 1.01402 1.21973 1.02400 0.94383 1.01649 1.19749 0.91504 0.94928 0.84465 1.21372 1.31271 0.91812 1.12984 0.96001 1.25808 0.96825 0.96633 0.98509 1.70072 1.42328 1.14769 1.30934 0.85858 0.80290 0.80113 0.77753 1.17694 1.21488 1.15778 1.48280 1.51662 1.30064 1.04496 1.22492 0.94532 0.85912 1.00034 1.22621 0.97546 1.03140 0.91546 1.22347 1.00506 0.98959 0.96958 1.21785 0.78927 0.84664 0.85794 1.90681 1.38766 1.30940 1.84647 0.91186 0.91657 0.93011 0.94424 0.89698 0.90275 0.93334 0.94010 0.91380 0.89817 0.93304 0.93077 0.92288 0.90390 0.88013 0.88484 0.85987 0.87490 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.80 71.98 0.71 -3.25 16 2 C -0.14 -5.69 5.25 30.60 0.16 -5.53 16 3 C 0.15 5.63 1.84 44.25 0.08 5.71 16 4 H 0.13 3.95 6.33 -2.39 -0.02 3.93 16 5 C 0.50 21.82 6.80 87.66 0.60 22.41 16 6 O -0.57 -28.95 13.67 17.73 0.24 -28.71 16 7 N -0.60 -25.35 2.47 -826.15 -2.04 -27.39 16 8 C 0.11 4.22 6.14 86.38 0.53 4.75 16 9 C -0.15 -4.36 10.21 71.98 0.73 -3.62 16 10 C 0.22 9.10 3.82 85.63 0.33 9.43 16 11 C -0.54 -28.39 7.69 25.60 0.20 -28.19 16 12 H 0.02 1.38 8.06 -2.91 -0.02 1.36 16 13 C 0.02 1.13 5.47 84.65 0.46 1.59 16 14 N -0.94 -55.53 13.96 21.45 0.30 -55.23 16 15 Si 0.94 38.00 27.47 68.60 1.88 39.88 16 16 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 17 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.23 -8.37 6.54 99.48 0.65 -7.72 16 19 N -0.61 -18.69 2.24 -798.20 -1.78 -20.47 16 20 C 0.09 1.60 7.30 86.83 0.63 2.23 16 21 C -0.11 -1.35 7.18 31.65 0.23 -1.13 16 22 C -0.15 -3.10 6.86 30.59 0.21 -2.89 16 23 C 0.50 17.57 6.76 87.90 0.59 18.17 16 24 O -0.57 -27.39 14.63 17.72 0.26 -27.13 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 1.73 7.76 -2.39 -0.02 1.71 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.04 1.77 6.64 -2.39 -0.02 1.75 16 29 H 0.08 4.07 5.25 -2.39 -0.01 4.06 16 30 H 0.08 3.03 8.04 -2.39 -0.02 3.01 16 31 H 0.05 2.06 7.50 -2.38 -0.02 2.04 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.94 7.16 -2.39 -0.02 1.92 16 36 H 0.05 1.95 5.13 -2.39 -0.01 1.94 16 37 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -79.78 340.07 5.25 -74.53 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.93 Total: 24.82 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 5.46 Total: 19.70 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -3.52 Total: -103.09 kcal Atomic # 8 Polarization: -56.35 SS G_CDS: 0.50 Total: -55.85 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.88 Total: 39.88 kcal Total: -79.78 5.25 -74.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133431069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.067 kcal (2) G-P(sol) polarization free energy of solvation -79.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds