Wall clock time and date at job start Tue Mar 31 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 H 1.08997 * 109.47147 * 305.34967 * 3 2 1 5 5 C 1.50704 * 109.46792 * 185.34754 * 3 2 1 6 6 O 1.21280 * 119.99768 * 256.35375 * 5 3 2 7 7 N 1.34778 * 119.99988 * 76.36047 * 5 3 2 8 8 C 1.46492 * 119.99885 * 183.27892 * 7 5 3 9 9 C 1.53007 * 109.47209 * 85.27507 * 8 7 5 10 10 C 1.46503 * 119.99850 * 3.28094 * 7 5 3 11 11 C 1.50694 * 109.47234 * 86.84034 * 10 7 5 12 12 H 1.08006 * 120.00366 * 359.97438 * 11 10 7 13 13 C 1.37880 * 120.00153 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99720 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00235 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47289 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47315 * 119.99600 * 15 13 11 18 18 H 1.48502 * 109.47450 * 239.99815 * 15 13 11 19 19 N 1.46497 * 109.47061 * 65.35049 * 3 2 1 20 20 C 1.46764 * 124.34609 * 240.00134 * 19 3 2 21 21 C 1.54478 * 105.47133 * 197.01493 * 20 19 3 22 22 C 1.54630 * 101.76812 * 334.58211 * 21 20 19 23 23 C 1.34413 * 124.35268 * 59.69769 * 19 3 2 24 24 O 1.21283 * 124.93917 * 359.56951 * 23 19 3 25 25 H 1.09005 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47744 * 59.99773 * 1 2 3 27 27 H 1.09006 * 109.46735 * 299.99575 * 1 2 3 28 28 H 1.08996 * 109.47269 * 120.00041 * 2 1 3 29 29 H 1.09006 * 109.46735 * 240.00425 * 2 1 3 30 30 H 1.09000 * 109.47592 * 205.27103 * 8 7 5 31 31 H 1.08996 * 109.47548 * 325.27508 * 8 7 5 32 32 H 1.08996 * 109.46865 * 59.99583 * 9 8 7 33 33 H 1.09001 * 109.46858 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.46514 * 300.00256 * 9 8 7 35 35 H 1.08995 * 109.46750 * 206.83790 * 10 7 5 36 36 H 1.09002 * 109.47030 * 326.83698 * 10 7 5 37 37 H 0.96999 * 119.99718 * 180.02562 * 14 13 11 38 38 H 1.08995 * 110.24844 * 316.01139 * 20 19 3 39 39 H 1.08998 * 110.24785 * 78.01614 * 20 19 3 40 40 H 1.09004 * 110.97269 * 92.70250 * 21 20 19 41 41 H 1.09003 * 110.97040 * 216.46405 * 21 20 19 42 42 H 1.08998 * 110.48763 * 143.47604 * 22 21 20 43 43 H 1.09003 * 110.48483 * 265.99114 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6005 1.9833 -0.8382 5 6 3.5412 1.4445 -0.1324 6 8 4.2352 1.6613 0.8382 7 7 4.1124 1.2056 -1.3295 8 6 5.5712 1.1363 -1.4442 9 6 6.0426 -0.2799 -1.1078 10 6 3.2744 1.0151 -2.5161 11 6 2.9690 2.3545 -3.1356 12 1 3.3596 3.2574 -2.6899 13 6 2.1900 2.4274 -4.2709 14 7 1.7139 1.3280 -4.8133 15 14 1.8108 4.0876 -5.0384 16 1 2.4591 5.1607 -4.2424 17 1 2.3299 4.1201 -6.4293 18 1 0.3414 4.3021 -5.0533 19 7 1.6596 2.0949 1.2553 20 6 0.8152 3.2920 1.3437 21 6 1.0448 3.8544 2.7640 22 6 1.4734 2.5872 3.5395 23 6 2.0343 1.6707 2.4745 24 8 2.7240 0.6964 2.6893 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 5.8679 1.3855 -2.4631 31 1 6.0243 1.8444 -0.7505 32 1 5.5895 -0.9880 -1.8016 33 1 7.1280 -0.3315 -1.1937 34 1 5.7459 -0.5291 -0.0890 35 1 3.8031 0.3929 -3.2381 36 1 2.3432 0.5269 -2.2286 37 1 1.1661 1.3792 -5.6122 38 1 1.1184 4.0236 0.5948 39 1 -0.2329 3.0251 1.2086 40 1 1.8402 4.5998 2.7646 41 1 0.1235 4.2691 3.1730 42 1 2.2374 2.8316 4.2774 43 1 0.6118 2.1257 4.0221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133431207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:44 Heat of formation + Delta-G solvation = -74.989926 kcal Electronic energy + Delta-G solvation = -24165.275400 eV Core-core repulsion = 20824.356383 eV Total energy + Delta-G solvation = -3340.919017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41295 -38.64144 -35.92450 -35.09575 -34.50522 -32.78191 -30.71853 -30.42789 -27.34220 -27.13748 -26.50924 -23.07100 -22.71613 -21.74308 -21.67160 -19.40950 -17.88926 -16.74030 -16.62414 -16.30596 -16.00188 -15.16297 -14.67577 -14.42575 -14.14586 -13.91176 -13.60032 -13.37079 -12.97262 -12.91486 -12.73499 -12.50265 -12.31942 -12.08156 -11.92114 -11.63087 -11.51482 -11.38404 -11.29794 -10.99082 -10.93176 -10.88508 -10.69786 -10.51974 -10.44215 -10.08935 -9.72944 -9.26269 -9.03539 -8.62109 -8.13490 -7.65951 -6.23304 -4.31448 3.01989 3.16269 3.25728 3.28713 3.32326 3.51593 4.06848 4.29931 4.59843 4.62063 4.91189 5.08350 5.19349 5.27482 5.36963 5.53749 5.62896 5.64324 5.66946 5.78522 5.84453 5.86880 5.88573 5.94866 6.01449 6.06771 6.13878 6.30181 6.33142 6.38448 6.48113 6.58591 6.71124 6.81430 6.92322 7.19214 7.57743 7.61900 7.73139 8.02056 8.37182 8.67505 8.77142 9.11027 9.37315 10.82730 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.006954 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.507957 B = 4025.327733 C = 4859.576972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.145 3.855 4 H 0.126 0.874 5 C 0.508 3.492 6 O -0.549 6.549 7 N -0.597 5.597 8 C 0.119 3.881 9 C -0.164 4.164 10 C 0.230 3.770 11 C -0.540 4.540 12 H 0.061 0.939 13 C 0.066 3.934 14 N -0.888 5.888 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 N -0.604 5.604 20 C 0.103 3.897 21 C -0.130 4.130 22 C -0.155 4.155 23 C 0.523 3.477 24 O -0.515 6.515 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.036 0.964 36 H 0.043 0.957 37 H 0.265 0.735 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 2.122 9.418 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.039 3.961 4 H 0.144 0.856 5 C 0.294 3.706 6 O -0.428 6.428 7 N -0.329 5.329 8 C -0.005 4.005 9 C -0.222 4.222 10 C 0.110 3.890 11 C -0.579 4.579 12 H 0.079 0.921 13 C -0.137 4.137 14 N -0.526 5.526 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 N -0.338 5.338 20 C -0.020 4.020 21 C -0.168 4.168 22 C -0.195 4.195 23 C 0.310 3.690 24 O -0.390 6.390 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.130 1.605 9.798 10.410 hybrid contribution -0.283 0.989 -0.859 1.340 sum -3.413 2.594 8.939 9.914 Atomic orbital electron populations 1.21677 0.95128 1.01412 1.01689 1.21841 0.96640 0.94753 1.03823 1.20940 0.93062 0.95571 0.86485 0.85632 1.20588 0.90290 0.76809 0.82929 1.90628 1.64327 1.49920 1.37914 1.48185 1.06464 1.69242 1.09014 1.21188 0.81204 0.96462 1.01637 1.22115 1.00221 0.97934 1.01925 1.19572 0.90379 0.97272 0.81769 1.21564 1.32222 0.93078 1.11011 0.92112 1.24941 0.95449 0.96794 0.96521 1.69932 1.34335 1.27002 1.21378 0.86501 0.78148 0.83907 0.79309 1.19674 1.20794 1.20771 1.47969 1.50980 1.29165 1.05717 1.22071 0.94780 0.87198 0.97986 1.22566 1.02621 0.97146 0.94454 1.22304 1.02718 0.96262 0.98224 1.20607 0.79225 0.85145 0.84053 1.90676 1.36683 1.28015 1.83583 0.92823 0.92069 0.93286 0.90621 0.89740 0.90543 0.91536 0.92712 0.92544 0.92644 0.94554 0.93914 0.92521 0.90296 0.91152 0.90177 0.89557 0.88582 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.80 37.16 0.36 -1.76 16 2 C -0.13 -2.38 4.99 -26.73 -0.13 -2.51 16 3 C 0.15 2.80 1.83 -69.08 -0.13 2.68 16 4 H 0.13 2.52 6.76 -51.93 -0.35 2.17 16 5 C 0.51 11.26 6.77 -10.98 -0.07 11.18 16 6 O -0.55 -13.51 13.87 -15.01 -0.21 -13.72 16 7 N -0.60 -12.98 2.47 -175.06 -0.43 -13.42 16 8 C 0.12 2.31 6.09 -4.04 -0.02 2.29 16 9 C -0.16 -2.82 10.21 37.16 0.38 -2.44 16 10 C 0.23 5.37 4.69 -5.20 -0.02 5.34 16 11 C -0.54 -13.65 8.78 -34.44 -0.30 -13.95 16 12 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 13 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -23.63 13.29 55.43 0.74 -22.90 16 15 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 N -0.60 -10.27 2.20 -166.16 -0.37 -10.63 16 20 C 0.10 1.30 7.30 -3.12 -0.02 1.28 16 21 C -0.13 -1.32 7.18 -25.10 -0.18 -1.50 16 22 C -0.15 -1.90 6.86 -26.74 -0.18 -2.08 16 23 C 0.52 9.36 6.70 -10.86 -0.07 9.29 16 24 O -0.51 -11.41 14.82 -15.02 -0.22 -11.63 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.69 7.76 -51.93 -0.40 0.28 16 28 H 0.08 1.48 6.59 -51.93 -0.34 1.14 16 29 H 0.08 1.59 6.22 -51.93 -0.32 1.26 16 30 H 0.08 1.43 8.04 -51.93 -0.42 1.02 16 31 H 0.07 1.33 7.52 -51.93 -0.39 0.94 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.04 0.90 8.05 -51.93 -0.42 0.48 16 36 H 0.04 1.01 4.78 -51.93 -0.25 0.76 16 37 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -31.57 345.58 -7.89 -39.46 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.09 Total: 3.40 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -0.50 Total: 9.39 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.06 Total: -46.95 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.43 Total: -25.36 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.57 -7.89 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133431207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.525 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds