Wall clock time and date at job start Tue Mar 31 2020 06:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47463 * 2 1 4 4 N 1.46503 * 109.47341 * 180.02562 * 3 2 1 5 5 C 1.34772 * 120.00198 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99799 * 355.00372 * 5 4 3 7 7 C 1.50698 * 120.00103 * 175.00644 * 5 4 3 8 8 N 1.46496 * 109.47286 * 36.04039 * 7 5 4 9 9 C 1.34775 * 120.00150 * 54.93185 * 8 7 5 10 10 O 1.21690 * 120.00018 * 4.99492 * 9 8 7 11 11 C 1.46376 * 119.99968 * 184.99716 * 9 8 7 12 12 H 1.08001 * 120.00400 * 359.97438 * 11 9 8 13 13 C 1.40050 * 119.99620 * 180.02562 * 11 9 8 14 14 N 1.30670 * 120.00531 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99906 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47514 * 89.99657 * 15 13 11 17 17 H 1.48505 * 109.47219 * 209.99673 * 15 13 11 18 18 H 1.48506 * 109.46890 * 329.99501 * 15 13 11 19 19 C 1.53001 * 109.47462 * 156.03980 * 7 5 4 20 20 C 1.52998 * 109.47398 * 179.97438 * 19 7 5 21 21 C 1.52992 * 109.47346 * 300.00251 * 20 19 7 22 22 C 1.53005 * 109.47389 * 59.99693 * 21 20 19 23 23 C 1.52998 * 109.47127 * 300.00440 * 22 21 20 24 24 H 1.09009 * 109.46650 * 299.99665 * 1 2 3 25 25 H 1.08994 * 109.46955 * 59.99277 * 1 2 3 26 26 H 1.08997 * 109.47377 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46983 * 239.99948 * 2 1 3 28 28 H 1.09003 * 109.47041 * 120.00658 * 2 1 3 29 29 H 1.09000 * 109.46760 * 60.00642 * 3 2 1 30 30 H 1.08994 * 109.47626 * 300.00312 * 3 2 1 31 31 H 0.96998 * 119.99715 * 0.02562 * 4 3 2 32 32 H 0.97011 * 120.00091 * 235.21616 * 8 7 5 33 33 H 0.96998 * 120.00662 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.47052 * 300.00423 * 19 7 5 35 35 H 1.09003 * 109.47038 * 59.99556 * 19 7 5 36 36 H 1.08996 * 109.46834 * 179.97438 * 20 19 7 37 37 H 1.09003 * 109.46790 * 60.00419 * 20 19 7 38 38 H 1.09003 * 109.47313 * 299.99847 * 21 20 19 39 39 H 1.09000 * 109.47164 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.47364 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.46768 * 59.99820 * 22 21 20 42 42 H 1.09003 * 109.46790 * 299.99366 * 23 22 21 43 43 H 1.09001 * 109.47485 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1790 2.6095 -0.0002 6 8 3.5761 3.6579 -0.0908 7 6 5.6818 2.6119 0.1128 8 7 6.2278 1.4620 -0.6123 9 6 5.9169 1.2741 -1.9102 10 8 5.2577 2.1066 -2.5045 11 6 6.3722 0.0688 -2.6048 12 1 6.9577 -0.6698 -2.0774 13 6 6.0496 -0.1260 -3.9536 14 7 5.3418 0.7678 -4.5919 15 14 6.6300 -1.6646 -4.8399 16 1 5.6083 -2.7328 -4.6981 17 1 6.8316 -1.3603 -6.2794 18 1 7.9118 -2.1236 -4.2468 19 6 6.2365 3.9045 -0.4892 20 6 7.7621 3.9071 -0.3739 21 6 8.1624 3.8181 1.1000 22 6 7.6077 2.5255 1.7021 23 6 6.0821 2.5228 1.5868 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8900 29 1 1.6768 1.9562 0.8901 30 1 1.6768 1.9564 -0.8899 31 1 3.9900 0.6023 -0.0013 32 1 6.8099 0.8334 -0.1571 33 1 5.1180 0.6327 -5.5260 34 1 5.9510 3.9681 -1.5392 35 1 5.8302 4.7601 0.0502 36 1 8.1573 4.8278 -0.8032 37 1 8.1687 3.0515 -0.9132 38 1 7.7559 4.6737 1.6393 39 1 9.2493 3.8196 1.1821 40 1 7.8933 2.4619 2.7521 41 1 8.0143 1.6699 1.1628 42 1 5.6755 3.3784 2.1260 43 1 5.6869 1.6018 2.0152 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153725378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:10 Heat of formation + Delta-G solvation = -103.826855 kcal Electronic energy + Delta-G solvation = -24025.222918 eV Core-core repulsion = 20683.053438 eV Total energy + Delta-G solvation = -3342.169480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.11416 -37.62913 -36.33038 -35.23952 -32.96955 -32.33565 -31.71823 -30.35992 -29.30341 -26.10006 -25.99431 -22.88428 -22.26390 -21.33707 -20.55107 -19.88139 -18.14351 -17.39757 -16.53442 -15.70579 -15.42772 -15.26628 -14.89596 -14.39587 -14.05152 -13.86390 -13.50565 -13.40108 -12.76640 -12.53350 -12.45935 -12.21582 -12.13811 -11.86490 -11.83022 -11.74247 -11.50986 -11.14693 -11.01275 -10.93893 -10.76154 -10.67441 -10.50311 -10.28788 -10.22442 -10.08260 -9.80036 -9.11366 -8.85371 -8.38909 -7.60590 -7.55262 -6.22118 -4.69544 3.09459 3.17459 3.20002 3.39361 3.83974 4.06075 4.54205 4.70502 5.04487 5.06546 5.07215 5.11940 5.16253 5.39042 5.54079 5.60553 5.66744 5.77202 5.78612 5.81895 5.84536 5.90387 5.94827 5.96982 6.07590 6.12530 6.21331 6.36225 6.37551 6.42055 6.44901 6.51640 6.64189 6.92428 7.09769 7.18038 7.38375 7.81288 7.94344 8.19266 8.29280 8.97616 8.99547 9.45171 10.55072 10.73835 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.008442 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.017911 B = 3316.109153 C = 5225.745240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.123 3.877 4 N -0.721 5.721 5 C 0.535 3.465 6 O -0.554 6.554 7 C 0.177 3.823 8 N -0.758 5.758 9 C 0.553 3.447 10 O -0.561 6.561 11 C -0.545 4.545 12 H 0.066 0.934 13 C 0.089 3.911 14 N -0.762 5.762 15 Si 0.904 3.096 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.265 1.265 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.115 4.115 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.402 0.598 32 H 0.382 0.618 33 H 0.268 0.732 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -1.964 11.730 11.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.001 4.001 4 N -0.373 5.373 5 C 0.321 3.679 6 O -0.432 6.432 7 C 0.086 3.914 8 N -0.416 5.416 9 C 0.357 3.643 10 O -0.442 6.442 11 C -0.582 4.582 12 H 0.085 0.915 13 C -0.131 4.131 14 N -0.391 5.391 15 Si 0.729 3.271 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.150 4.150 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.153 4.153 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.237 0.763 32 H 0.215 0.785 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.916 -0.525 11.050 11.100 hybrid contribution 0.759 -1.558 -0.377 1.774 sum -0.158 -2.084 10.672 10.875 Atomic orbital electron populations 1.21660 0.95068 1.01673 1.02004 1.21722 0.96414 0.96441 1.02805 1.21235 0.80839 0.96496 1.01518 1.45783 1.06392 1.09356 1.75733 1.20784 0.90049 0.83173 0.73931 1.90589 1.70438 1.32003 1.50129 1.20026 0.88909 0.90285 0.92203 1.46479 1.55259 1.26904 1.12996 1.18239 0.80139 0.87373 0.78581 1.90651 1.42567 1.46096 1.64880 1.20836 1.36579 1.05064 0.95742 0.91543 1.25667 0.93355 0.96620 0.97463 1.70012 1.27528 1.31811 1.09720 0.86435 0.79712 0.82144 0.78831 1.19856 1.20536 1.18962 1.21693 0.94406 0.95087 1.03812 1.21452 0.96284 1.01856 0.95479 1.21545 0.99696 0.97396 0.96857 1.21481 0.94642 0.98789 1.00228 1.21713 0.96944 1.02399 0.94267 0.92745 0.92405 0.92514 0.90894 0.91724 0.92517 0.91876 0.76316 0.78497 0.92127 0.89192 0.92139 0.92665 0.91169 0.92450 0.92481 0.92154 0.91376 0.90931 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.14 -1.84 6.05 -26.73 -0.16 -2.00 16 3 C 0.12 2.09 5.68 -4.04 -0.02 2.07 16 4 N -0.72 -13.82 5.23 -60.30 -0.32 -14.13 16 5 C 0.53 11.55 5.16 -10.99 -0.06 11.50 16 6 O -0.55 -13.68 16.09 5.56 0.09 -13.59 16 7 C 0.18 3.36 0.59 -132.97 -0.08 3.28 16 8 N -0.76 -15.25 3.40 -50.08 -0.17 -15.42 16 9 C 0.55 14.32 6.72 -12.99 -0.09 14.23 16 10 O -0.56 -16.96 12.30 5.20 0.06 -16.90 16 11 C -0.55 -14.33 9.54 -35.63 -0.34 -14.67 16 12 H 0.07 1.60 7.85 -52.49 -0.41 1.18 16 13 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 14 N -0.76 -22.11 11.83 55.55 0.66 -21.45 16 15 Si 0.90 19.47 29.56 -169.99 -5.02 14.45 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 19 C -0.11 -2.24 4.11 -26.73 -0.11 -2.35 16 20 C -0.11 -1.90 5.77 -26.74 -0.15 -2.05 16 21 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 22 C -0.11 -1.43 5.75 -26.73 -0.15 -1.58 16 23 C -0.12 -1.66 4.78 -26.73 -0.13 -1.79 16 24 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.40 7.34 7.62 -40.82 -0.31 7.03 16 32 H 0.38 6.69 7.16 -40.82 -0.29 6.39 16 33 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 34 H 0.09 2.25 6.37 -51.93 -0.33 1.92 16 35 H 0.06 1.18 7.87 -51.93 -0.41 0.78 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.30 7.61 -51.93 -0.39 0.91 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.87 6.77 -51.93 -0.35 0.51 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 340.61 15.07 5.13 5.13 Total: -1.00 -33.58 340.61 -7.88 -41.46 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -7.13 Total: 14.55 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -1.18 Total: 5.91 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.17 Total: -51.00 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: 0.15 Total: -30.49 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.58 -7.88 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153725378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.371 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds