Wall clock time and date at job start Tue Mar 31 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47062 * 2 1 4 4 H 1.08996 * 109.46760 * 55.00438 * 3 2 1 5 5 C 1.50700 * 109.46982 * 175.00264 * 3 2 1 6 6 O 1.21278 * 119.99981 * 120.00123 * 5 3 2 7 7 N 1.34777 * 120.00042 * 300.00238 * 5 3 2 8 8 C 1.46498 * 120.00214 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47158 * 179.97438 * 8 7 5 10 10 C 1.53009 * 109.47266 * 179.97438 * 9 8 7 11 11 C 1.50693 * 109.47286 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99961 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00181 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00140 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99871 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.46934 * 90.00330 * 15 13 11 17 17 H 1.48497 * 109.47034 * 210.00738 * 15 13 11 18 18 H 1.48503 * 109.46899 * 330.00456 * 15 13 11 19 19 N 1.46497 * 109.46943 * 295.00063 * 3 2 1 20 20 C 1.46768 * 124.34381 * 120.00561 * 19 3 2 21 21 C 1.54487 * 105.46844 * 197.01165 * 20 19 3 22 22 C 1.54619 * 101.76557 * 334.58255 * 21 20 19 23 23 C 1.34413 * 124.35463 * 299.99759 * 19 3 2 24 24 O 1.21283 * 124.94031 * 359.62849 * 23 19 3 25 25 H 1.09004 * 109.46748 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46764 * 299.99488 * 1 2 3 27 27 H 1.09000 * 109.47034 * 60.00005 * 1 2 3 28 28 H 1.09001 * 109.46905 * 240.00166 * 2 1 3 29 29 H 1.08995 * 109.47225 * 120.00700 * 2 1 3 30 30 H 0.97007 * 120.00103 * 359.97438 * 7 5 3 31 31 H 1.09004 * 109.47082 * 299.99792 * 8 7 5 32 32 H 1.08998 * 109.47185 * 59.99839 * 8 7 5 33 33 H 1.08996 * 109.47332 * 299.99953 * 9 8 7 34 34 H 1.08997 * 109.47673 * 59.99825 * 9 8 7 35 35 H 1.09001 * 109.46676 * 299.99563 * 10 9 8 36 36 H 1.08997 * 109.46881 * 59.99385 * 10 9 8 37 37 H 0.97010 * 120.00023 * 179.97438 * 14 13 11 38 38 H 1.09000 * 110.25007 * 78.01166 * 20 19 3 39 39 H 1.09004 * 110.24485 * 316.00872 * 20 19 3 40 40 H 1.08996 * 110.96729 * 92.70209 * 21 20 19 41 41 H 1.08999 * 110.96649 * 216.46453 * 21 20 19 42 42 H 1.09007 * 110.48907 * 143.47513 * 22 21 20 43 43 H 1.09001 * 110.48711 * 265.98708 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 8 4.2216 1.9436 -0.7478 7 7 4.1299 0.8911 1.2030 8 6 5.5899 0.8933 1.3236 9 6 5.9946 0.2096 2.6312 10 6 7.5195 0.2113 2.7569 11 6 7.9182 -0.4626 4.0444 12 1 7.1598 -0.8528 4.7071 13 6 9.2510 -0.5802 4.3770 14 7 9.5990 -1.1679 5.5009 15 14 10.5627 0.0953 3.2312 16 1 10.8539 1.5066 3.5896 17 1 11.8004 -0.7146 3.3636 18 1 10.0765 0.0306 1.8295 19 7 1.6525 2.0975 -1.2518 20 6 0.8076 3.2949 -1.3327 21 6 0.3194 3.3565 -2.7971 22 6 1.4366 2.5828 -3.5347 23 6 2.0249 1.6791 -2.4737 24 8 2.7296 0.7168 -2.6935 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.5862 0.4920 1.9003 31 1 6.0248 0.3545 0.4817 32 1 5.9528 1.9210 1.3239 33 1 5.5597 0.7486 3.4728 34 1 5.6316 -0.8181 2.6314 35 1 7.9540 -0.3281 1.9152 36 1 7.8829 1.2389 2.7564 37 1 10.5368 -1.2510 5.7347 38 1 1.3897 4.1843 -1.0915 39 1 -0.0416 3.2038 -0.6555 40 1 -0.6418 2.8549 -2.9092 41 1 0.2629 4.3874 -3.1464 42 1 1.0177 1.9921 -4.3495 43 1 2.1917 3.2718 -3.9134 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173134805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:47 Heat of formation + Delta-G solvation = -86.046381 kcal Electronic energy + Delta-G solvation = -22452.737346 eV Core-core repulsion = 19111.338886 eV Total energy + Delta-G solvation = -3341.398461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.97376 -39.09809 -36.48715 -35.50750 -35.08875 -33.25805 -31.46797 -31.24219 -28.17790 -27.76610 -26.42607 -22.99065 -22.50536 -22.17960 -20.91647 -20.33841 -18.98327 -17.52939 -17.15236 -16.69357 -16.18648 -15.71813 -15.32820 -15.16921 -14.53376 -14.24228 -14.06700 -13.85403 -13.74781 -13.48152 -13.21507 -12.88909 -12.81240 -12.67764 -12.22813 -11.99248 -11.89360 -11.84875 -11.48626 -11.39867 -11.21733 -11.05681 -10.87805 -10.18878 -9.96516 -9.78754 -9.72157 -9.64049 -9.22197 -8.83802 -8.78722 -8.54781 -6.05752 -4.04357 2.50947 2.67020 2.73527 3.32166 3.39569 3.42108 3.45043 4.11167 4.15912 4.45439 4.46231 4.57528 4.63006 4.69328 4.82669 4.97044 5.10825 5.17184 5.25762 5.28517 5.35096 5.40425 5.50034 5.58835 5.63145 5.64853 5.68332 5.79992 5.96131 6.03762 6.29942 6.37574 6.46611 6.71791 6.80938 6.98265 7.23989 7.37612 7.63048 7.77459 8.13537 8.36549 8.51022 8.97966 9.56728 11.07467 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031254 B = 0.003104 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.676880 B = 9019.708435 C = 9475.335445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.144 3.856 4 H 0.112 0.888 5 C 0.498 3.502 6 O -0.524 6.524 7 N -0.724 5.724 8 C 0.116 3.884 9 C -0.112 4.112 10 C -0.011 4.011 11 C -0.522 4.522 12 H 0.072 0.928 13 C 0.067 3.933 14 N -0.903 5.903 15 Si 0.879 3.121 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.264 1.264 19 N -0.606 5.606 20 C 0.104 3.896 21 C -0.130 4.130 22 C -0.155 4.155 23 C 0.525 3.475 24 O -0.514 6.514 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.398 0.602 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.014 0.986 37 H 0.263 0.737 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.548 9.307 -14.002 29.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.037 3.963 4 H 0.130 0.870 5 C 0.281 3.719 6 O -0.400 6.400 7 N -0.376 5.376 8 C -0.007 4.007 9 C -0.150 4.150 10 C -0.049 4.049 11 C -0.560 4.560 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.542 5.542 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.189 1.189 19 N -0.342 5.342 20 C -0.019 4.019 21 C -0.168 4.168 22 C -0.195 4.195 23 C 0.313 3.687 24 O -0.389 6.389 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.232 0.768 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.475 9.072 -14.600 29.095 hybrid contribution 0.621 0.236 0.025 0.665 sum -22.854 9.308 -14.574 28.659 Atomic orbital electron populations 1.21706 0.94652 1.02103 1.01748 1.21911 0.96997 0.94167 1.04541 1.20872 0.92443 0.95639 0.87375 0.87007 1.20771 0.90245 0.78700 0.82135 1.90708 1.65020 1.44748 1.39486 1.46101 1.08878 1.60042 1.22622 1.21635 0.77992 1.01280 0.99764 1.21700 0.99790 0.99668 0.93877 1.19504 0.90650 0.96832 0.97938 1.21096 0.93169 1.37612 1.04078 0.90998 1.25023 0.98699 0.94725 0.95012 1.69914 1.17287 1.43848 1.23186 0.86780 0.81244 0.79145 0.82177 1.20253 1.21345 1.18878 1.47900 1.51761 1.29218 1.05279 1.22101 0.94135 0.87718 0.97950 1.22567 0.98448 1.01894 0.93841 1.22317 0.99473 0.99558 0.98166 1.20712 0.79374 0.84639 0.83999 1.90727 1.36376 1.28253 1.83514 0.92201 0.92563 0.92687 0.89654 0.90098 0.76775 0.91803 0.91935 0.92143 0.92070 0.96294 0.96783 0.92701 0.91079 0.90309 0.89993 0.89178 0.88271 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.80 37.16 0.36 -0.68 16 2 C -0.14 -1.34 5.30 -26.73 -0.14 -1.48 16 3 C 0.14 1.53 2.67 -69.08 -0.18 1.34 16 4 H 0.11 0.84 8.07 -51.93 -0.42 0.42 16 5 C 0.50 7.54 6.85 -10.99 -0.08 7.46 16 6 O -0.52 -10.32 14.87 -9.62 -0.14 -10.46 16 7 N -0.72 -10.28 5.42 -60.30 -0.33 -10.60 16 8 C 0.12 2.02 5.67 -4.04 -0.02 1.99 16 9 C -0.11 -2.14 5.27 -26.73 -0.14 -2.28 16 10 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 11 C -0.52 -14.85 9.66 -34.44 -0.33 -15.19 16 12 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 15 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 19 N -0.61 -6.36 2.08 -166.16 -0.35 -6.70 16 20 C 0.10 0.65 7.30 -3.12 -0.02 0.63 16 21 C -0.13 -0.62 7.18 -25.10 -0.18 -0.80 16 22 C -0.15 -1.26 6.86 -26.75 -0.18 -1.44 16 23 C 0.53 6.83 6.69 -10.86 -0.07 6.76 16 24 O -0.51 -9.20 15.34 -9.62 -0.15 -9.35 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.40 7.75 -51.93 -0.40 0.00 16 28 H 0.08 1.11 6.65 -51.93 -0.35 0.77 16 29 H 0.08 0.69 7.43 -51.93 -0.39 0.31 16 30 H 0.40 4.41 7.83 -40.82 -0.32 4.09 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 36 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -37.24 349.15 -8.10 -45.34 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.30 Total: -1.49 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.20 Total: -2.20 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.10 Total: -44.51 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.29 Total: -19.81 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.24 -8.10 -45.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173134805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.707 kcal (2) G-P(sol) polarization free energy of solvation -37.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds