Wall clock time and date at job start Tue Mar 31 2020 05:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46718 * 2 1 4 4 C 1.53002 * 109.46718 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46642 * 180.02562 * 4 3 2 6 6 C 1.34781 * 119.99730 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99769 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00013 * 179.97438 * 6 5 4 9 9 H 1.08996 * 109.50074 * 299.94060 * 8 6 5 10 10 C 1.53109 * 109.49127 * 179.85554 * 8 6 5 11 11 C 1.53036 * 109.50416 * 178.70576 * 10 8 6 12 12 C 1.53188 * 109.34035 * 61.34828 * 11 10 8 13 13 N 1.46921 * 108.77559 * 305.34790 * 12 11 10 14 14 C 1.34777 * 120.63015 * 233.62857 * 13 12 11 15 15 O 1.21687 * 119.99919 * 174.76127 * 14 13 12 16 16 C 1.46379 * 119.99907 * 354.76222 * 14 13 12 17 17 H 1.07998 * 120.00091 * 5.00909 * 16 14 13 18 18 C 1.40047 * 119.99469 * 185.00568 * 16 14 13 19 19 N 1.30665 * 120.00819 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99395 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47440 * 60.00148 * 20 18 16 22 22 H 1.48509 * 109.47009 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47420 * 299.99832 * 20 18 16 24 24 C 1.46922 * 118.73785 * 53.61406 * 13 12 11 25 25 H 1.09000 * 109.46947 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47076 * 299.99340 * 1 2 3 27 27 H 1.08993 * 109.47622 * 59.99877 * 1 2 3 28 28 H 1.09003 * 109.46919 * 240.00371 * 2 1 3 29 29 H 1.08993 * 109.47097 * 120.00111 * 2 1 3 30 30 H 1.09003 * 109.47122 * 60.00496 * 3 2 1 31 31 H 1.08993 * 109.47427 * 299.99908 * 3 2 1 32 32 H 1.08995 * 109.47076 * 60.00660 * 4 3 2 33 33 H 1.09003 * 109.47111 * 300.00103 * 4 3 2 34 34 H 0.96995 * 120.00358 * 359.97438 * 5 4 3 35 35 H 1.09002 * 109.50242 * 58.67195 * 10 8 6 36 36 H 1.09003 * 109.45103 * 298.70259 * 10 8 6 37 37 H 1.08997 * 109.49598 * 301.38004 * 11 10 8 38 38 H 1.09004 * 109.49506 * 181.31565 * 11 10 8 39 39 H 1.09002 * 109.58485 * 65.14137 * 12 11 10 40 40 H 1.09003 * 109.58605 * 185.55619 * 12 11 10 41 41 H 0.96994 * 120.00818 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.59106 * 66.17495 * 24 13 12 43 43 H 1.09008 * 109.58398 * 186.46316 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.3833 3.0702 0.0001 7 8 6.1714 2.1483 -0.0008 8 6 5.8856 4.4910 0.0001 9 1 5.5234 5.0049 -0.8902 10 6 7.4166 4.4915 0.0039 11 6 7.9271 5.9339 -0.0286 12 6 7.4398 6.6728 1.2217 13 7 5.9778 6.5526 1.3023 14 6 5.2041 7.6497 1.4209 15 8 3.9920 7.5456 1.3909 16 6 5.8217 8.9665 1.5858 17 1 6.8953 9.0700 1.5315 18 6 5.0203 10.0922 1.8140 19 7 3.7213 9.9670 1.8802 20 14 5.8085 11.7727 2.0237 21 1 6.5715 12.1182 0.7975 22 1 4.7512 12.7902 2.2526 23 1 6.7292 11.7458 3.1885 24 6 5.3752 5.2136 1.2509 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9290 -0.8909 33 1 3.9337 0.9286 0.8891 34 1 3.4279 3.5610 0.0003 35 1 7.7829 3.9567 -0.8724 36 1 7.7776 3.9988 0.9067 37 1 7.5462 6.4346 -0.9187 38 1 9.0170 5.9337 -0.0495 39 1 7.8926 6.2288 2.1082 40 1 7.7169 7.7250 1.1555 41 1 3.1663 10.7465 2.0385 42 1 5.6595 4.6505 2.1398 43 1 4.2897 5.3029 1.2064 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184352219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:35 Heat of formation + Delta-G solvation = -100.504964 kcal Electronic energy + Delta-G solvation = -22489.458867 eV Core-core repulsion = 19147.433435 eV Total energy + Delta-G solvation = -3342.025432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.97428 -38.14343 -36.34278 -35.54947 -33.75624 -32.61430 -31.81216 -30.85066 -28.85506 -26.58946 -24.55866 -23.89392 -22.82013 -21.49991 -20.86336 -19.79988 -18.90010 -17.12369 -16.20003 -16.06050 -15.90860 -15.70246 -15.07479 -14.46473 -14.14999 -13.99727 -13.85439 -13.81183 -13.22032 -13.15488 -12.95781 -12.61002 -12.39926 -12.02729 -11.71969 -11.59283 -11.37522 -11.35617 -11.20375 -11.11730 -10.98948 -10.86530 -10.75772 -10.46736 -10.30385 -10.07599 -9.92519 -9.54256 -9.00580 -8.89184 -7.65375 -7.29821 -6.24936 -4.69754 2.81121 3.12660 3.18042 3.19310 3.28693 4.04478 4.45627 4.50846 4.61349 4.70126 4.81046 5.00905 5.07913 5.14951 5.24099 5.32293 5.42284 5.53404 5.55709 5.63009 5.66215 5.72152 5.74232 5.77562 5.89238 5.99994 6.01763 6.08012 6.14289 6.25251 6.36067 6.38999 6.42636 6.50840 6.55671 6.78024 7.41344 7.53270 7.60413 8.07536 8.28848 8.36597 8.97322 9.36261 10.51233 10.69748 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.003851 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.922503 B = 7269.678714 C = 8590.222824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.135 4.135 4 C 0.119 3.881 5 N -0.733 5.733 6 C 0.524 3.476 7 O -0.548 6.548 8 C -0.123 4.123 9 H 0.098 0.902 10 C -0.092 4.092 11 C -0.136 4.136 12 C 0.119 3.881 13 N -0.640 5.640 14 C 0.560 3.440 15 O -0.579 6.579 16 C -0.543 4.543 17 H 0.074 0.926 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.907 3.093 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.267 1.267 24 C 0.134 3.866 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.405 0.595 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.094 0.906 41 H 0.269 0.731 42 H 0.046 0.954 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 -13.092 -3.900 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.172 4.172 4 C -0.005 4.005 5 N -0.386 5.386 6 C 0.311 3.689 7 O -0.425 6.425 8 C -0.145 4.145 9 H 0.116 0.884 10 C -0.130 4.130 11 C -0.174 4.174 12 C -0.005 4.005 13 N -0.378 5.378 14 C 0.366 3.634 15 O -0.462 6.462 16 C -0.580 4.580 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.396 5.396 20 Si 0.731 3.269 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.192 1.192 24 C 0.009 3.991 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.240 0.760 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.298 -13.710 -3.876 14.251 hybrid contribution 0.124 1.100 0.055 1.108 sum -0.174 -12.611 -3.821 13.178 Atomic orbital electron populations 1.21769 0.95549 1.01634 1.02076 1.21425 0.96083 0.96006 1.02338 1.21856 0.94252 0.97932 1.03206 1.21327 0.93668 0.83387 1.02074 1.46121 1.07595 1.08850 1.76015 1.20781 0.81828 0.91593 0.74700 1.90648 1.55451 1.46628 1.49797 1.21831 0.98338 0.91888 1.02484 0.88425 1.21273 0.92424 0.96781 1.02530 1.21993 0.99994 0.95447 1.00009 1.21470 0.82133 1.01629 0.95246 1.48177 1.05539 1.04717 1.79379 1.18257 0.85858 0.83115 0.76151 1.90579 1.14234 1.85616 1.55764 1.20949 0.93960 0.90580 1.52489 0.90852 1.25724 0.94455 1.00264 0.92754 1.69989 1.04502 1.30598 1.34534 0.86449 0.79414 0.81505 0.79511 1.19212 1.20553 1.19226 1.20985 0.99625 0.85076 0.93418 0.92727 0.92545 0.92647 0.91805 0.91719 0.90954 0.91164 0.91804 0.91704 0.75973 0.91922 0.91612 0.91694 0.91481 0.93852 0.88774 0.92000 0.93608 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.13 -1.20 5.33 -26.73 -0.14 -1.34 16 4 C 0.12 1.34 5.67 -4.04 -0.02 1.32 16 5 N -0.73 -9.67 5.46 -60.29 -0.33 -10.00 16 6 C 0.52 8.33 7.16 -10.98 -0.08 8.25 16 7 O -0.55 -10.11 15.98 5.55 0.09 -10.02 16 8 C -0.12 -2.00 2.68 -91.61 -0.25 -2.25 16 9 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 10 C -0.09 -1.42 4.47 -26.66 -0.12 -1.54 16 11 C -0.14 -2.07 6.08 -26.62 -0.16 -2.24 16 12 C 0.12 2.18 6.31 -3.72 -0.02 2.16 16 13 N -0.64 -14.11 2.97 -174.43 -0.52 -14.63 16 14 C 0.56 15.39 7.62 -12.98 -0.10 15.29 16 15 O -0.58 -17.94 14.45 5.20 0.08 -17.87 16 16 C -0.54 -14.77 8.86 -35.63 -0.32 -15.08 16 17 H 0.07 1.81 5.69 -52.49 -0.30 1.51 16 18 C 0.09 2.38 5.50 -17.37 -0.10 2.29 16 19 N -0.77 -22.36 11.84 55.55 0.66 -21.70 16 20 Si 0.91 19.57 29.56 -169.99 -5.02 14.54 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 C 0.13 2.55 5.58 -3.71 -0.02 2.53 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.41 4.97 8.02 -40.82 -0.33 4.64 16 35 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.79 5.37 -51.93 -0.28 1.51 16 41 H 0.27 7.14 8.29 -40.82 -0.34 6.81 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.76 6.59 -51.92 -0.34 1.42 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -33.71 346.83 -8.08 -41.79 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.14 Total: 5.10 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -1.11 Total: 7.56 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.19 Total: -46.33 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: 0.16 Total: -27.89 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.71 -8.08 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184352219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.719 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds