Wall clock time and date at job start Tue Mar 31 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47383 * 2 1 4 4 N 1.46502 * 109.47082 * 239.99420 * 2 1 3 5 5 C 1.34776 * 119.99717 * 60.00450 * 4 2 1 6 6 O 1.21688 * 120.00233 * 359.97438 * 5 4 2 7 7 C 1.46379 * 119.99801 * 179.97438 * 5 4 2 8 8 H 1.07994 * 120.00311 * 0.02562 * 7 5 4 9 9 C 1.40056 * 119.99521 * 179.97438 * 7 5 4 10 10 N 1.30671 * 120.00402 * 0.02562 * 9 7 5 11 11 Si 1.86807 * 119.99558 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46711 * 60.00457 * 11 9 7 13 13 H 1.48496 * 109.46673 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47148 * 300.00331 * 11 9 7 15 15 C 1.50706 * 109.46894 * 120.00068 * 2 1 3 16 16 O 1.21281 * 119.99699 * 264.99617 * 15 2 1 17 17 N 1.34773 * 120.00080 * 85.00108 * 15 2 1 18 18 C 1.46506 * 119.99969 * 180.02562 * 17 15 2 19 19 C 1.52998 * 109.47237 * 179.72043 * 18 17 15 20 20 C 1.54258 * 110.03455 * 292.90744 * 19 18 17 21 21 C 1.54967 * 104.16246 * 217.13741 * 20 19 18 22 22 C 1.54887 * 102.77367 * 37.88475 * 21 20 19 23 23 C 1.53874 * 110.03277 * 175.68586 * 19 18 17 24 24 H 1.09000 * 109.47196 * 300.00422 * 1 2 3 25 25 H 1.09002 * 109.46922 * 60.00081 * 1 2 3 26 26 H 1.09007 * 109.47428 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47305 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47025 * 299.99856 * 3 2 1 29 29 H 1.09000 * 109.47299 * 59.99641 * 3 2 1 30 30 H 0.96994 * 120.00423 * 240.00008 * 4 2 1 31 31 H 0.96992 * 119.99871 * 179.97438 * 10 9 7 32 32 H 0.97005 * 120.00161 * 359.72088 * 17 15 2 33 33 H 1.09001 * 109.46512 * 299.72412 * 18 17 15 34 34 H 1.08998 * 109.47174 * 59.71534 * 18 17 15 35 35 H 1.09006 * 110.01511 * 54.29951 * 19 18 17 36 36 H 1.09005 * 110.48463 * 335.78619 * 20 19 18 37 37 H 1.09006 * 110.48910 * 98.42335 * 20 19 18 38 38 H 1.09007 * 110.71710 * 279.57479 * 21 20 19 39 39 H 1.09001 * 110.92470 * 156.29521 * 21 20 19 40 40 H 1.09006 * 110.48348 * 203.40513 * 22 21 20 41 41 H 1.08996 * 110.59816 * 80.82043 * 22 21 20 42 42 H 1.09001 * 110.03624 * 238.57082 * 23 19 18 43 43 H 1.09006 * 110.03109 * 359.95719 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 1.6927 -0.2303 -2.4202 6 8 0.9928 0.7589 -2.5320 7 6 2.1811 -0.9201 -3.6154 8 1 2.8019 -1.7982 -3.5163 9 6 1.8423 -0.4419 -4.8874 10 7 1.0907 0.6203 -5.0074 11 14 2.4649 -1.3226 -6.4126 12 1 1.9702 -2.7228 -6.4122 13 1 1.9700 -0.6226 -7.6251 14 1 3.9499 -1.3223 -6.4129 15 6 2.0322 -0.7105 1.2305 16 8 2.3207 -0.0749 2.2224 17 7 2.1609 -2.0520 1.2287 18 6 2.6487 -2.7427 2.4252 19 6 2.6937 -4.2492 2.1617 20 6 1.2624 -4.7990 1.9922 21 6 1.3083 -6.1912 2.6713 22 6 2.2243 -5.9451 3.8957 23 6 3.3054 -4.9778 3.3711 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 2.5759 -1.4794 -1.1071 31 1 0.8564 0.9516 -5.8883 32 1 1.9264 -2.5607 0.4368 33 1 3.6498 -2.3861 2.6677 34 1 1.9785 -2.5398 3.2605 35 1 3.2808 -4.4540 1.2664 36 1 0.5434 -4.1527 2.4957 37 1 1.0140 -4.8971 0.9354 38 1 1.7475 -6.9320 2.0029 39 1 0.3131 -6.5021 2.9895 40 1 2.6770 -6.8796 4.2274 41 1 1.6625 -5.4848 4.7085 42 1 4.1888 -5.5368 3.0627 43 1 3.5709 -4.2580 4.1455 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185239664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:06 Heat of formation + Delta-G solvation = -99.204658 kcal Electronic energy + Delta-G solvation = -22919.139006 eV Core-core repulsion = 19577.169960 eV Total energy + Delta-G solvation = -3341.969046 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05198 -38.53360 -37.37469 -34.45412 -34.21038 -32.39193 -30.29116 -29.97769 -28.88191 -26.56770 -26.11193 -25.12610 -22.48623 -20.94027 -20.48449 -19.91894 -18.62581 -17.84900 -16.48216 -16.41104 -15.57513 -15.34775 -15.11263 -14.70804 -14.27644 -13.98035 -13.56861 -13.47631 -13.27457 -13.00141 -12.53839 -12.45298 -11.92955 -11.59793 -11.56474 -11.47015 -11.35010 -11.26711 -11.15693 -11.05041 -10.99111 -10.96404 -10.83450 -10.65883 -10.52359 -10.46567 -10.26737 -9.42813 -8.94294 -8.89104 -7.66160 -7.55298 -6.22874 -4.70202 2.88588 3.12297 3.18130 3.19302 3.34520 4.05453 4.35329 4.38047 4.48004 4.52848 4.65793 4.99891 5.11293 5.18469 5.22954 5.28583 5.41152 5.45233 5.57258 5.60061 5.63391 5.68862 5.77096 5.81585 5.86976 5.92054 6.02644 6.09511 6.19010 6.24538 6.35320 6.48878 6.55164 6.62328 6.99516 7.08681 7.38147 7.57904 7.80533 7.97722 8.23331 8.45033 8.97162 9.42276 10.53550 10.71656 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.004388 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.696200 B = 6379.252310 C = 7516.547411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.173 3.827 3 C -0.144 4.144 4 N -0.761 5.761 5 C 0.560 3.440 6 O -0.569 6.569 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.090 3.910 10 N -0.765 5.765 11 Si 0.907 3.093 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.521 3.479 16 O -0.543 6.543 17 N -0.730 5.730 18 C 0.126 3.874 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.117 4.117 24 H 0.051 0.949 25 H 0.098 0.902 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.377 0.623 31 H 0.269 0.731 32 H 0.404 0.596 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -12.473 12.689 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.083 3.917 3 C -0.202 4.202 4 N -0.419 5.419 5 C 0.365 3.635 6 O -0.451 6.451 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.131 4.131 10 N -0.393 5.393 11 Si 0.731 3.269 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.193 1.193 15 C 0.307 3.693 16 O -0.419 6.419 17 N -0.384 5.384 18 C 0.003 3.997 19 C -0.125 4.125 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.162 4.162 23 C -0.155 4.155 24 H 0.070 0.930 25 H 0.117 0.883 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.209 0.791 31 H 0.080 0.920 32 H 0.239 0.761 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.525 -11.126 13.219 17.345 hybrid contribution 0.576 -1.183 -1.045 1.680 sum 2.102 -12.309 12.175 17.440 Atomic orbital electron populations 1.22157 0.93246 1.01868 1.03855 1.20121 0.95229 0.93407 0.82982 1.22023 1.00443 0.94443 1.03312 1.46376 1.57898 1.32817 1.04826 1.18125 0.80201 0.84224 0.80958 1.90539 1.41264 1.27912 1.85407 1.20825 1.34084 1.13812 0.89515 0.91576 1.25668 0.93354 0.94113 0.99922 1.69986 1.26679 1.18382 1.24280 0.86452 0.79757 0.80017 0.80637 1.19329 1.20568 1.19333 1.21070 0.76327 0.81892 0.89995 1.90644 1.49666 1.66238 1.35379 1.46133 1.67909 1.07409 1.16921 1.21477 0.99684 0.90549 0.88038 1.22048 0.97342 0.93684 0.99418 1.22503 0.96065 0.96372 1.01152 1.22502 0.99593 0.97163 0.96980 1.22359 0.96974 0.99024 0.97890 1.22119 0.98280 0.98114 0.96988 0.93031 0.88294 0.93272 0.93422 0.88944 0.92608 0.79056 0.91997 0.76090 0.91710 0.91648 0.90118 0.91226 0.91254 0.91498 0.91655 0.91806 0.91658 0.91489 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.38 37.15 0.31 -2.61 16 2 C 0.17 3.39 0.98 -132.97 -0.13 3.26 16 3 C -0.14 -2.98 7.93 37.15 0.29 -2.69 16 4 N -0.76 -15.98 4.85 -50.08 -0.24 -16.22 16 5 C 0.56 14.78 7.17 -12.99 -0.09 14.69 16 6 O -0.57 -16.76 11.22 5.20 0.06 -16.70 16 7 C -0.55 -14.56 9.54 -35.63 -0.34 -14.90 16 8 H 0.07 1.61 7.85 -52.49 -0.41 1.20 16 9 C 0.09 2.39 5.50 -17.36 -0.10 2.30 16 10 N -0.76 -21.93 11.83 55.55 0.66 -21.27 16 11 Si 0.91 19.42 29.56 -169.99 -5.02 14.40 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 14 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 15 C 0.52 9.23 6.65 -10.98 -0.07 9.16 16 16 O -0.54 -10.95 16.10 5.56 0.09 -10.86 16 17 N -0.73 -10.15 5.08 -60.29 -0.31 -10.45 16 18 C 0.13 1.48 4.73 -4.04 -0.02 1.46 16 19 C -0.11 -0.97 2.97 -89.51 -0.27 -1.23 16 20 C -0.12 -1.11 6.05 -25.03 -0.15 -1.26 16 21 C -0.12 -0.97 6.91 -24.70 -0.17 -1.14 16 22 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16 23 C -0.12 -0.93 6.46 -25.61 -0.17 -1.09 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.10 2.22 6.16 -51.93 -0.32 1.90 16 26 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.09 2.17 6.16 -51.93 -0.32 1.85 16 29 H 0.05 1.07 7.87 -51.93 -0.41 0.67 16 30 H 0.38 6.95 7.22 -40.82 -0.29 6.66 16 31 H 0.27 7.07 8.29 -40.82 -0.34 6.74 16 32 H 0.40 5.18 7.09 -40.82 -0.29 4.89 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.80 8.02 -51.93 -0.42 0.39 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.68 7.77 -51.93 -0.40 0.27 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -32.02 343.73 -7.71 -39.73 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.05 Total: 11.36 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.07 Total: 4.84 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.11 Total: -47.94 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: 0.15 Total: -27.57 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.02 -7.71 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185239664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.477 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds