Wall clock time and date at job start Tue Mar 31 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47319 * 2 1 4 4 C 1.53000 * 109.46993 * 239.99943 * 2 1 3 5 5 O 1.45201 * 109.46978 * 120.00055 * 2 1 3 6 6 C 1.34634 * 116.99818 * 59.99497 * 5 2 1 7 7 O 1.21507 * 120.00189 * 359.72959 * 6 5 2 8 8 N 1.34784 * 119.99829 * 180.02562 * 6 5 2 9 9 C 1.47185 * 125.59268 * 359.42297 * 8 6 5 10 10 C 1.54635 * 105.46500 * 156.28612 * 9 8 6 11 11 H 1.08998 * 114.47204 * 158.44795 * 10 9 8 12 12 C 1.54450 * 109.03397 * 287.22220 * 10 9 8 13 13 N 1.47246 * 105.42839 * 142.45613 * 12 10 9 14 14 C 1.36939 * 125.60821 * 156.23540 * 13 12 10 15 15 H 1.07996 * 119.99945 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99839 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00079 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47187 * 60.00089 * 18 16 14 20 20 H 1.48505 * 109.46951 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47041 * 299.99537 * 18 16 14 22 22 C 1.46845 * 108.78169 * 336.21135 * 13 12 10 23 23 C 1.53974 * 107.77749 * 2.27438 * 22 13 12 24 24 H 1.09001 * 113.76747 * 142.94383 * 23 22 13 25 25 C 1.46803 * 125.59943 * 179.72767 * 8 6 5 26 26 H 1.09001 * 109.46839 * 300.00340 * 1 2 3 27 27 H 1.09003 * 109.46834 * 59.99616 * 1 2 3 28 28 H 1.08998 * 109.47606 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46982 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46956 * 299.99984 * 3 2 1 31 31 H 1.09001 * 109.47443 * 60.00029 * 3 2 1 32 32 H 1.09002 * 109.47011 * 300.00143 * 4 2 1 33 33 H 1.08994 * 109.47249 * 60.00026 * 4 2 1 34 34 H 1.09001 * 109.47037 * 180.02562 * 4 2 1 35 35 H 1.09001 * 110.22419 * 275.41803 * 9 8 6 36 36 H 1.08990 * 110.22985 * 37.36394 * 9 8 6 37 37 H 1.09003 * 110.25187 * 261.43916 * 12 10 9 38 38 H 1.08998 * 110.25699 * 23.46391 * 12 10 9 39 39 H 0.96999 * 119.99650 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.80356 * 242.70301 * 22 13 12 41 41 H 1.09005 * 109.80356 * 121.84371 * 22 13 12 42 42 H 1.09006 * 109.77930 * 302.38045 * 25 8 6 43 43 H 1.09001 * 109.77871 * 63.16628 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9470 -2.5080 0.5063 8 7 2.0670 -2.6654 2.4172 9 6 2.9248 -2.1430 3.4932 10 6 2.6260 -3.0283 4.7253 11 1 3.4112 -3.0298 5.4813 12 6 1.2293 -2.6681 5.2776 13 7 0.6388 -3.9449 5.7125 14 6 -0.3477 -4.0884 6.6514 15 1 -0.7575 -3.2176 7.1414 16 6 -0.8201 -5.3531 6.9741 17 7 -0.3202 -6.4144 6.3773 18 14 -2.1652 -5.5488 8.2554 19 1 -3.3785 -4.8141 7.8156 20 1 -2.4902 -6.9890 8.4159 21 1 -1.6967 -4.9991 9.5529 22 6 1.2813 -5.0391 4.9734 23 6 2.3660 -4.4232 4.0706 24 1 3.2643 -5.0344 3.9837 25 6 1.7429 -4.0672 2.7089 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 3.9746 -2.2259 3.2120 36 1 2.6719 -1.1044 3.7060 37 1 1.3223 -1.9876 6.1241 38 1 0.6189 -2.2171 4.4952 39 1 -0.6506 -7.2981 6.6025 40 1 0.5417 -5.5559 4.3619 41 1 1.7374 -5.7395 5.6730 42 1 0.6612 -4.1940 2.7537 43 1 2.1583 -4.7109 1.9335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193498016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:27 Heat of formation + Delta-G solvation = -46.474364 kcal Electronic energy + Delta-G solvation = -23560.503850 eV Core-core repulsion = 20220.821361 eV Total energy + Delta-G solvation = -3339.682489 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72444 -39.29033 -36.73220 -34.94331 -33.91521 -32.08822 -30.02340 -29.56033 -27.49078 -27.40873 -25.69226 -25.49532 -23.28273 -21.36556 -20.13623 -19.37980 -19.19655 -17.77921 -16.69182 -16.45040 -16.30601 -15.20477 -14.90640 -14.71387 -14.29746 -13.82837 -13.68091 -13.30124 -13.04053 -12.90631 -12.58698 -12.23905 -12.13956 -11.95486 -11.91589 -11.73552 -11.70755 -11.56874 -11.31100 -11.23511 -10.88238 -10.78037 -10.32950 -10.28201 -10.13498 -10.00271 -9.90410 -9.83417 -9.65349 -8.61579 -8.41942 -6.83834 -5.71915 -3.05088 2.28079 3.06257 3.41375 3.45736 3.46813 4.06378 4.49149 4.66707 4.70285 4.78899 4.84956 4.96886 5.26585 5.36482 5.45323 5.48040 5.51184 5.56918 5.59346 5.65195 5.69196 5.76353 5.79518 5.81149 5.89114 5.96792 6.15902 6.21636 6.24762 6.29511 6.32777 6.47161 6.59300 6.63165 6.69902 6.87323 7.52357 7.55010 7.75289 7.79793 8.25221 8.55246 9.21825 9.81977 10.47284 11.39991 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.004144 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.511432 B = 6755.751213 C = 6991.602343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.182 4.182 5 O -0.363 6.363 6 C 0.666 3.334 7 O -0.572 6.572 8 N -0.595 5.595 9 C 0.114 3.886 10 C -0.113 4.113 11 H 0.104 0.896 12 C 0.142 3.858 13 N -0.603 5.603 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.923 5.923 18 Si 0.913 3.087 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.187 3.813 23 C -0.126 4.126 24 H 0.093 0.907 25 C 0.137 3.863 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.020 0.980 39 H 0.253 0.747 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.310 11.887 -11.326 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.278 6.278 6 C 0.421 3.579 7 O -0.462 6.462 8 N -0.335 5.335 9 C -0.009 4.009 10 C -0.133 4.133 11 H 0.122 0.878 12 C 0.016 3.984 13 N -0.330 5.330 14 C -0.357 4.357 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.743 3.257 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.062 3.938 23 C -0.146 4.146 24 H 0.111 0.889 25 C 0.016 3.984 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.909 11.643 -11.606 18.243 hybrid contribution -0.755 -0.133 0.582 0.963 sum 7.153 11.510 -11.024 17.469 Atomic orbital electron populations 1.22521 0.94062 1.05275 1.02262 1.22009 0.94403 0.91408 0.82329 1.21841 1.02070 0.92738 1.02979 1.22506 1.01349 1.03639 0.96449 1.86298 1.71662 1.23760 1.46080 1.17454 0.78853 0.80190 0.81392 1.90877 1.41327 1.70583 1.43410 1.47109 1.52208 1.13260 1.20944 1.22135 0.93670 0.98548 0.86527 1.23419 0.99691 0.94583 0.95596 0.87782 1.21446 0.90252 0.90287 0.96439 1.44371 1.42966 0.99971 1.45659 1.19006 1.10823 0.92795 1.13081 0.90487 1.24783 1.00021 0.95420 1.00090 1.69927 1.44789 0.97500 1.44824 0.86191 0.81620 0.76737 0.81158 1.21211 1.21578 1.21170 1.21078 0.90842 0.89656 0.92218 1.23454 1.00308 0.96978 0.93814 0.88859 1.22035 1.01504 0.78348 0.96530 0.92129 0.91412 0.89229 0.91608 0.90347 0.91475 0.89339 0.91373 0.92347 0.91735 0.90523 0.94287 0.96218 0.93652 0.93652 0.92840 0.90347 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 8.37 37.16 0.31 -1.98 16 2 C 0.14 1.65 1.13 -90.62 -0.10 1.55 16 3 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 4 C -0.18 -2.09 8.37 37.16 0.31 -1.78 16 5 O -0.36 -5.45 9.41 -40.31 -0.38 -5.82 16 6 C 0.67 11.53 7.92 54.06 0.43 11.96 16 7 O -0.57 -10.99 12.20 -19.28 -0.24 -11.22 16 8 N -0.59 -9.99 2.92 -177.10 -0.52 -10.50 16 9 C 0.11 1.64 6.14 -2.81 -0.02 1.62 16 10 C -0.11 -1.84 4.37 -87.25 -0.38 -2.22 16 11 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 12 C 0.14 2.90 6.31 -2.87 -0.02 2.88 16 13 N -0.60 -15.17 3.39 -170.86 -0.58 -15.75 16 14 C -0.23 -6.35 10.27 -15.06 -0.15 -6.51 16 15 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 16 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 17 N -0.92 -26.77 10.30 55.49 0.57 -26.20 16 18 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 C 0.19 4.37 4.69 -3.35 -0.02 4.35 16 23 C -0.13 -2.22 4.15 -87.88 -0.36 -2.58 16 24 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 25 C 0.14 2.43 5.95 -3.40 -0.02 2.41 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.38 5.87 -51.93 -0.30 1.07 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.26 5.89 -51.93 -0.31 0.95 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.05 7.99 -51.93 -0.41 0.64 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.02 0.43 7.42 -51.93 -0.39 0.05 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.05 1.19 6.96 -51.93 -0.36 0.82 16 41 H 0.05 1.38 7.29 -51.93 -0.38 1.00 16 42 H 0.08 1.63 7.35 -51.93 -0.38 1.25 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -31.25 333.72 -8.08 -39.32 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.15 Total: -0.42 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 0.21 Total: 8.50 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.52 Total: -52.45 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.61 Total: -17.05 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.25 -8.08 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193498016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.150 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds