Wall clock time and date at job start Tue Mar 31 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47378 * 2 1 4 4 N 1.46499 * 109.47109 * 179.97438 * 3 2 1 5 5 C 1.37102 * 119.99459 * 97.66913 * 4 3 2 6 6 H 1.08001 * 119.99617 * 163.59234 * 5 4 3 7 7 C 1.38938 * 120.00252 * 343.59219 * 5 4 3 8 8 N 1.31409 * 120.00525 * 351.82498 * 7 5 4 9 9 Si 1.86810 * 120.00310 * 171.82730 * 7 5 4 10 10 H 1.48494 * 109.47256 * 89.99649 * 9 7 5 11 11 H 1.48493 * 109.47171 * 210.00382 * 9 7 5 12 12 H 1.48507 * 109.46434 * 330.00019 * 9 7 5 13 13 C 1.34777 * 120.00672 * 277.67028 * 4 3 2 14 14 O 1.21296 * 119.99646 * 3.68207 * 13 4 3 15 15 C 1.50699 * 120.00232 * 183.68676 * 13 4 3 16 16 H 1.08999 * 109.49678 * 310.56585 * 15 13 4 17 17 C 1.53046 * 109.49429 * 190.50829 * 15 13 4 18 18 C 1.53042 * 109.53461 * 178.64923 * 17 15 13 19 19 C 1.53188 * 109.31128 * 61.36438 * 18 17 15 20 20 N 1.46918 * 108.77883 * 305.35989 * 19 18 17 21 21 C 1.34774 * 120.63765 * 233.63273 * 20 19 18 22 22 C 1.50701 * 119.99625 * 359.97438 * 21 20 19 23 23 O 1.21284 * 120.00532 * 179.97438 * 21 20 19 24 24 C 1.47002 * 118.75294 * 53.60891 * 20 19 18 25 25 H 1.09002 * 109.46832 * 300.00121 * 1 2 3 26 26 H 1.08998 * 109.46959 * 59.99540 * 1 2 3 27 27 H 1.08995 * 109.47540 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47286 * 240.00140 * 2 1 3 29 29 H 1.08999 * 109.47361 * 120.00104 * 2 1 3 30 30 H 1.09005 * 109.46952 * 60.00543 * 3 2 1 31 31 H 1.08998 * 109.47451 * 300.00158 * 3 2 1 32 32 H 0.96997 * 120.00674 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.45930 * 298.67033 * 17 15 13 34 34 H 1.08993 * 109.46027 * 58.64351 * 17 15 13 35 35 H 1.09002 * 109.49689 * 181.31591 * 18 17 15 36 36 H 1.09002 * 109.49841 * 301.40865 * 18 17 15 37 37 H 1.09001 * 109.59011 * 65.15706 * 19 18 17 38 38 H 1.09002 * 109.58590 * 185.43305 * 19 18 17 39 39 H 1.08998 * 109.47121 * 90.00059 * 22 21 20 40 40 H 1.09002 * 109.47287 * 209.99925 * 22 21 20 41 41 H 1.08997 * 109.47214 * 330.00355 * 22 21 20 42 42 H 1.09002 * 109.63312 * 186.61886 * 24 20 19 43 43 H 1.09003 * 109.57855 * 66.17182 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1909 1.6007 -1.1759 6 1 5.2380 1.8650 -1.1591 7 6 3.5391 1.4210 -2.3897 8 7 2.3146 0.9449 -2.4138 9 14 4.4035 1.8562 -3.9876 10 1 5.1405 0.6693 -4.4909 11 1 3.3979 2.2785 -4.9952 12 1 5.3594 2.9668 -3.7465 13 6 4.1786 1.2868 1.1576 14 8 3.5736 1.0800 2.1884 15 6 5.6832 1.3697 1.1706 16 1 6.0896 0.7314 0.3861 17 6 6.2086 0.9045 2.5307 18 6 7.7381 0.9564 2.5335 19 6 8.1964 2.4003 2.3062 20 7 7.5779 2.9042 1.0725 21 6 8.3350 3.4348 0.0918 22 6 9.8309 3.5160 0.2551 23 8 7.8124 3.8469 -0.9221 24 6 6.1176 2.8184 0.9275 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6768 1.9564 -0.8899 32 1 1.8594 0.8198 -3.2611 33 1 5.8216 1.5582 3.3124 34 1 5.8798 -0.1179 2.7166 35 1 8.1124 0.6028 3.4942 36 1 8.1251 0.3220 1.7360 37 1 7.8875 3.0187 3.1490 38 1 9.2819 2.4284 2.2111 39 1 10.2887 2.6062 -0.1333 40 1 10.2103 4.3771 -0.2951 41 1 10.0758 3.6233 1.3118 42 1 5.8311 3.1216 -0.0795 43 1 5.6390 3.4708 1.6578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194892907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:37 Heat of formation + Delta-G solvation = -68.074495 kcal Electronic energy + Delta-G solvation = -23895.884642 eV Core-core repulsion = 20555.265501 eV Total energy + Delta-G solvation = -3340.619141 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06685 -38.63378 -36.76335 -35.11502 -32.80687 -32.21348 -31.59546 -30.85649 -29.29794 -25.89843 -24.98211 -24.52704 -23.01460 -21.21320 -20.13634 -18.98804 -18.69703 -17.26211 -16.47057 -16.05710 -15.70945 -15.18473 -14.45470 -14.33394 -14.15534 -13.83039 -13.55840 -13.28015 -13.08855 -12.89465 -12.85851 -12.53399 -12.24111 -11.94385 -11.90319 -11.48010 -11.26146 -11.09573 -10.94027 -10.78883 -10.63157 -10.55223 -10.32525 -10.23585 -10.15473 -9.94944 -9.59174 -9.52948 -8.76905 -8.51696 -8.21965 -7.65945 -6.24680 -3.89016 2.84023 3.14861 3.21622 3.26739 3.37641 3.91038 4.15362 4.66598 4.74434 4.96479 5.07251 5.10104 5.15004 5.28191 5.37432 5.50357 5.58148 5.68270 5.77888 5.85480 6.00420 6.05985 6.14554 6.21698 6.25991 6.33268 6.40493 6.50916 6.64109 6.70171 6.76555 6.83649 6.96651 7.09470 7.16432 7.40704 7.59053 7.65363 7.80999 7.89429 8.40824 8.50076 9.11492 9.56780 9.95923 10.67617 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.007076 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.460429 B = 3956.066094 C = 5453.140283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C 0.139 3.861 4 N -0.437 5.437 5 C -0.330 4.330 6 H 0.103 0.897 7 C 0.036 3.964 8 N -0.865 5.865 9 Si 0.916 3.084 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.457 3.543 14 O -0.608 6.608 15 C -0.101 4.101 16 H 0.089 0.911 17 C -0.097 4.097 18 C -0.135 4.135 19 C 0.104 3.896 20 N -0.611 5.611 21 C 0.506 3.494 22 C -0.174 4.174 23 O -0.541 6.541 24 C 0.118 3.882 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.108 0.892 32 H 0.266 0.734 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.622 1.415 6.021 12.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.153 4.153 3 C 0.016 3.984 4 N -0.153 5.153 5 C -0.457 4.457 6 H 0.120 0.880 7 C -0.168 4.168 8 N -0.504 5.504 9 Si 0.742 3.258 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.187 1.187 13 C 0.244 3.756 14 O -0.495 6.495 15 C -0.123 4.123 16 H 0.107 0.893 17 C -0.135 4.135 18 C -0.173 4.173 19 C -0.019 4.019 20 N -0.345 5.345 21 C 0.294 3.706 22 C -0.233 4.233 23 O -0.418 6.418 24 C -0.004 4.004 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.125 0.875 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.131 0.869 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.878 1.523 5.782 11.547 hybrid contribution 0.380 0.001 -0.857 0.938 sum 10.259 1.524 4.925 11.481 Atomic orbital electron populations 1.21576 0.97713 0.99601 1.00378 1.21706 0.93637 0.98601 1.01370 1.21404 0.79779 0.96872 1.00344 1.43838 1.05752 1.60057 1.05656 1.19850 0.96261 1.46738 0.82895 0.87992 1.25239 0.96133 0.95968 0.99459 1.70073 1.11798 1.42178 1.26346 0.86065 0.79143 0.79374 0.81208 1.20484 1.20818 1.18740 1.19840 0.88392 0.83111 0.84230 1.90517 1.69872 1.55953 1.33185 1.21337 0.95067 0.97310 0.98603 0.89282 1.21291 0.93032 1.02339 0.96820 1.21961 0.97394 0.95967 1.01999 1.21807 0.97953 0.95277 0.86822 1.48247 1.07912 1.60690 1.17631 1.20761 0.89678 0.77373 0.82758 1.21956 0.92629 1.04891 1.03857 1.90763 1.74716 1.47901 1.28398 1.21717 0.78077 0.95741 1.04877 0.94520 0.92910 0.94480 0.89308 0.94919 0.95415 0.87470 0.92295 0.91376 0.91472 0.90845 0.91571 0.91426 0.89759 0.89063 0.89225 0.90147 0.86935 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.91 37.16 0.37 -2.28 16 2 C -0.11 -2.69 5.64 -26.73 -0.15 -2.84 16 3 C 0.14 3.45 4.47 -4.04 -0.02 3.43 16 4 N -0.44 -11.06 2.65 -114.81 -0.30 -11.36 16 5 C -0.33 -8.41 8.56 -14.94 -0.13 -8.54 16 6 H 0.10 2.57 4.80 -52.49 -0.25 2.31 16 7 C 0.04 0.90 5.21 -17.47 -0.09 0.81 16 8 N -0.86 -21.91 8.06 55.49 0.45 -21.46 16 9 Si 0.92 20.44 29.56 -169.99 -5.03 15.41 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.46 11.01 6.84 -10.99 -0.08 10.93 16 14 O -0.61 -15.93 15.47 5.54 0.09 -15.85 16 15 C -0.10 -1.99 1.82 -91.65 -0.17 -2.15 16 16 H 0.09 1.84 7.43 -51.93 -0.39 1.45 16 17 C -0.10 -1.58 4.50 -26.69 -0.12 -1.70 16 18 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 19 C 0.10 1.15 6.21 -3.72 -0.02 1.13 16 20 N -0.61 -9.30 2.97 -172.72 -0.51 -9.81 16 21 C 0.51 8.00 7.81 -10.99 -0.09 7.91 16 22 C -0.17 -1.74 9.46 36.01 0.34 -1.40 16 23 O -0.54 -11.31 16.51 5.55 0.09 -11.22 16 24 C 0.12 2.21 5.39 -3.67 -0.02 2.19 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 2.26 6.39 -51.93 -0.33 1.92 16 29 H 0.03 0.80 7.87 -51.93 -0.41 0.39 16 30 H 0.03 0.69 7.72 -51.93 -0.40 0.29 16 31 H 0.11 2.77 5.75 -51.93 -0.30 2.47 16 32 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 33 H 0.07 1.15 8.03 -51.93 -0.42 0.73 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.67 5.53 -51.93 -0.29 0.38 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.59 6.19 -51.93 -0.32 0.26 16 42 H 0.11 2.47 4.81 -51.93 -0.25 2.22 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -30.79 332.69 -7.25 -38.04 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.72 Total: 5.50 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -0.33 Total: 5.73 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.37 Total: -42.64 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: 0.18 Total: -27.07 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.79 -7.25 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194892907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.032 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds