Wall clock time and date at job start Tue Mar 31 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47378 * 2 1 4 4 N 1.46499 * 109.47109 * 179.97438 * 3 2 1 5 5 C 1.37102 * 119.99459 * 97.66913 * 4 3 2 6 6 H 1.08001 * 119.99617 * 163.59234 * 5 4 3 7 7 C 1.38938 * 120.00252 * 343.59219 * 5 4 3 8 8 N 1.31409 * 120.00525 * 351.82498 * 7 5 4 9 9 Si 1.86810 * 120.00310 * 171.82730 * 7 5 4 10 10 H 1.48494 * 109.47256 * 89.99649 * 9 7 5 11 11 H 1.48493 * 109.47171 * 210.00382 * 9 7 5 12 12 H 1.48507 * 109.46434 * 330.00019 * 9 7 5 13 13 C 1.34777 * 120.00672 * 277.67028 * 4 3 2 14 14 O 1.21296 * 119.99646 * 3.68207 * 13 4 3 15 15 C 1.50699 * 120.00232 * 183.68676 * 13 4 3 16 16 H 1.08999 * 109.49678 * 310.56585 * 15 13 4 17 17 C 1.53046 * 109.49429 * 190.50829 * 15 13 4 18 18 C 1.53042 * 109.53461 * 178.64923 * 17 15 13 19 19 C 1.53188 * 109.31128 * 61.36438 * 18 17 15 20 20 N 1.46918 * 108.77883 * 305.35989 * 19 18 17 21 21 C 1.34774 * 120.63765 * 233.63273 * 20 19 18 22 22 C 1.50701 * 119.99625 * 359.97438 * 21 20 19 23 23 O 1.21284 * 120.00532 * 179.97438 * 21 20 19 24 24 C 1.47002 * 118.75294 * 53.60891 * 20 19 18 25 25 H 1.09002 * 109.46832 * 300.00121 * 1 2 3 26 26 H 1.08998 * 109.46959 * 59.99540 * 1 2 3 27 27 H 1.08995 * 109.47540 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47286 * 240.00140 * 2 1 3 29 29 H 1.08999 * 109.47361 * 120.00104 * 2 1 3 30 30 H 1.09005 * 109.46952 * 60.00543 * 3 2 1 31 31 H 1.08998 * 109.47451 * 300.00158 * 3 2 1 32 32 H 0.96997 * 120.00674 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.45930 * 298.67033 * 17 15 13 34 34 H 1.08993 * 109.46027 * 58.64351 * 17 15 13 35 35 H 1.09002 * 109.49689 * 181.31591 * 18 17 15 36 36 H 1.09002 * 109.49841 * 301.40865 * 18 17 15 37 37 H 1.09001 * 109.59011 * 65.15706 * 19 18 17 38 38 H 1.09002 * 109.58590 * 185.43305 * 19 18 17 39 39 H 1.08998 * 109.47121 * 90.00059 * 22 21 20 40 40 H 1.09002 * 109.47287 * 209.99925 * 22 21 20 41 41 H 1.08997 * 109.47214 * 330.00355 * 22 21 20 42 42 H 1.09002 * 109.63312 * 186.61886 * 24 20 19 43 43 H 1.09003 * 109.57855 * 66.17182 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1909 1.6007 -1.1759 6 1 5.2380 1.8650 -1.1591 7 6 3.5391 1.4210 -2.3897 8 7 2.3146 0.9449 -2.4138 9 14 4.4035 1.8562 -3.9876 10 1 5.1405 0.6693 -4.4909 11 1 3.3979 2.2785 -4.9952 12 1 5.3594 2.9668 -3.7465 13 6 4.1786 1.2868 1.1576 14 8 3.5736 1.0800 2.1884 15 6 5.6832 1.3697 1.1706 16 1 6.0896 0.7314 0.3861 17 6 6.2086 0.9045 2.5307 18 6 7.7381 0.9564 2.5335 19 6 8.1964 2.4003 2.3062 20 7 7.5779 2.9042 1.0725 21 6 8.3350 3.4348 0.0918 22 6 9.8309 3.5160 0.2551 23 8 7.8124 3.8469 -0.9221 24 6 6.1176 2.8184 0.9275 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6768 1.9564 -0.8899 32 1 1.8594 0.8198 -3.2611 33 1 5.8216 1.5582 3.3124 34 1 5.8798 -0.1179 2.7166 35 1 8.1124 0.6028 3.4942 36 1 8.1251 0.3220 1.7360 37 1 7.8875 3.0187 3.1490 38 1 9.2819 2.4284 2.2111 39 1 10.2887 2.6062 -0.1333 40 1 10.2103 4.3771 -0.2951 41 1 10.0758 3.6233 1.3118 42 1 5.8311 3.1216 -0.0795 43 1 5.6390 3.4708 1.6578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194892907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:37 Heat of formation + Delta-G solvation = -87.082882 kcal Electronic energy + Delta-G solvation = -23896.708908 eV Core-core repulsion = 20555.265501 eV Total energy + Delta-G solvation = -3341.443407 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48028 -40.33973 -38.18358 -37.04230 -34.40445 -33.81333 -33.39990 -32.25394 -30.33506 -27.70905 -26.62182 -26.00091 -24.44516 -22.68726 -21.83685 -20.89712 -19.91837 -18.88029 -17.96515 -17.86188 -16.99116 -16.47661 -16.22489 -16.11879 -15.72691 -15.38717 -15.07379 -14.86631 -14.62947 -14.19775 -14.17797 -13.87101 -13.67661 -13.37311 -13.13143 -13.06002 -12.93625 -12.72558 -12.53893 -12.37127 -12.28561 -12.08930 -12.07051 -11.83650 -11.69612 -11.51769 -11.47880 -10.86440 -10.74818 -10.27971 -9.67359 -9.63478 -8.21652 -5.90948 1.34065 1.42054 1.55353 1.64222 1.88849 2.13799 2.28806 2.98746 3.12352 3.66999 3.89385 3.95539 4.01641 4.13761 4.23148 4.31077 4.45608 4.48744 4.52221 4.61018 4.68865 4.70097 4.74471 4.78670 4.85396 4.90613 4.99398 5.07290 5.11467 5.15049 5.23719 5.26812 5.32242 5.42536 5.45931 5.51296 5.62598 5.82743 5.90679 6.49797 6.51565 7.11866 7.21514 7.59359 7.98944 8.71008 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.007076 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.460429 B = 3956.066094 C = 5453.140283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.140 3.860 4 N -0.450 5.450 5 C -0.345 4.345 6 H 0.099 0.901 7 C 0.001 3.999 8 N -0.876 5.876 9 Si 0.976 3.024 10 H -0.273 1.273 11 H -0.273 1.273 12 H -0.279 1.279 13 C 0.445 3.555 14 O -0.634 6.634 15 C -0.091 4.091 16 H 0.075 0.925 17 C -0.093 4.093 18 C -0.125 4.125 19 C 0.099 3.901 20 N -0.610 5.610 21 C 0.495 3.505 22 C -0.161 4.161 23 O -0.605 6.605 24 C 0.128 3.872 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.013 0.987 30 H 0.018 0.982 31 H 0.097 0.903 32 H 0.270 0.730 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.022 1.165 6.858 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.017 3.983 4 N -0.166 5.166 5 C -0.473 4.473 6 H 0.117 0.883 7 C -0.201 4.201 8 N -0.515 5.515 9 Si 0.801 3.199 10 H -0.199 1.199 11 H -0.198 1.198 12 H -0.205 1.205 13 C 0.234 3.766 14 O -0.523 6.523 15 C -0.113 4.113 16 H 0.094 0.906 17 C -0.131 4.131 18 C -0.163 4.163 19 C -0.022 4.022 20 N -0.342 5.342 21 C 0.286 3.714 22 C -0.220 4.220 23 O -0.486 6.486 24 C 0.004 3.996 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.148 0.852 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.136 0.864 42 H 0.093 0.907 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.295 1.251 6.651 14.034 hybrid contribution -0.411 0.081 -1.066 1.145 sum 11.884 1.332 5.585 13.198 Atomic orbital electron populations 1.21487 0.94618 1.01250 1.00948 1.21545 0.96326 0.96989 0.99281 1.21358 0.80120 0.97621 0.99171 1.44055 1.06038 1.60301 1.06204 1.19965 0.96402 1.47560 0.83329 0.88312 1.25877 0.96845 0.95795 1.01565 1.70146 1.12309 1.41995 1.27062 0.85172 0.77968 0.78493 0.78258 1.19880 1.19824 1.20473 1.20660 0.90443 0.82070 0.83428 1.90475 1.71027 1.56962 1.33838 1.21262 0.91707 0.97846 1.00469 0.90632 1.21292 0.96721 1.01056 0.94051 1.21948 0.93311 0.96890 1.04186 1.22207 1.00323 0.94525 0.85133 1.48382 1.06126 1.60472 1.19267 1.21953 0.92077 0.75803 0.81551 1.21986 0.87281 1.06113 1.06603 1.90736 1.76301 1.50608 1.30992 1.21265 0.81194 0.94685 1.02437 0.93479 0.92750 0.92295 0.91303 0.96769 0.96319 0.88550 0.91951 0.92021 0.92791 0.87069 0.91451 0.89958 0.85176 0.87005 0.88806 0.86414 0.90711 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 9.91 71.98 0.71 -4.15 16 2 C -0.10 -4.95 5.64 30.59 0.17 -4.77 16 3 C 0.14 7.23 4.47 86.38 0.39 7.62 16 4 N -0.45 -23.82 2.65 -635.54 -1.68 -25.50 16 5 C -0.35 -18.34 8.56 84.04 0.72 -17.62 16 6 H 0.10 5.24 4.80 -2.91 -0.01 5.23 16 7 C 0.00 0.08 5.21 84.92 0.44 0.52 16 8 N -0.88 -45.15 8.06 21.66 0.17 -44.98 16 9 Si 0.98 42.95 29.56 68.60 2.03 44.98 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 13 C 0.44 22.36 6.84 87.66 0.60 22.96 16 14 O -0.63 -34.42 15.47 -3.08 -0.05 -34.47 16 15 C -0.09 -3.66 1.82 -11.46 -0.02 -3.69 16 16 H 0.08 3.23 7.43 -2.39 -0.02 3.22 16 17 C -0.09 -2.97 4.50 30.62 0.14 -2.83 16 18 C -0.13 -2.54 6.08 30.67 0.19 -2.35 16 19 C 0.10 1.78 6.21 86.36 0.54 2.31 16 20 N -0.61 -17.71 2.97 -818.75 -2.43 -20.14 16 21 C 0.49 15.01 7.81 87.66 0.68 15.70 16 22 C -0.16 -2.58 9.46 71.24 0.67 -1.91 16 23 O -0.60 -25.89 16.51 -3.04 -0.05 -25.94 16 24 C 0.13 4.95 5.39 86.34 0.47 5.42 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 27 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 28 H 0.07 3.58 6.39 -2.39 -0.02 3.57 16 29 H 0.01 0.70 7.87 -2.39 -0.02 0.68 16 30 H 0.02 0.97 7.72 -2.38 -0.02 0.95 16 31 H 0.10 5.17 5.75 -2.39 -0.01 5.15 16 32 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 33 H 0.06 2.03 8.03 -2.39 -0.02 2.01 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.13 1.22 5.53 -2.39 -0.01 1.21 16 39 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.12 1.00 6.19 -2.39 -0.01 0.98 16 42 H 0.07 3.48 4.81 -2.39 -0.01 3.47 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -71.92 332.69 4.69 -67.24 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 1.00 Total: 21.60 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 5.70 Total: 17.21 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -3.94 Total: -90.62 kcal Atomic # 8 Polarization: -60.31 SS G_CDS: -0.10 Total: -60.41 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -71.92 4.69 -67.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194892907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.846 kcal (2) G-P(sol) polarization free energy of solvation -71.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds