Wall clock time and date at job start Tue Mar 31 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47054 * 2 1 4 4 H 1.08991 * 109.47258 * 304.99863 * 3 2 1 5 5 C 1.50708 * 109.46967 * 184.99932 * 3 2 1 6 6 H 1.08001 * 119.99857 * 240.00170 * 5 3 2 7 7 C 1.37871 * 119.99892 * 60.00419 * 5 3 2 8 8 N 1.31524 * 120.00040 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00079 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47269 * 89.99835 * 9 7 5 11 11 H 1.48506 * 109.47130 * 210.00115 * 9 7 5 12 12 H 1.48500 * 109.47119 * 329.99575 * 9 7 5 13 13 N 1.46500 * 109.47112 * 65.00434 * 3 2 1 14 14 C 1.34776 * 120.00008 * 274.99713 * 13 3 2 15 15 O 1.21355 * 119.99660 * 359.72928 * 14 13 3 16 16 C 1.49452 * 120.00360 * 179.97438 * 14 13 3 17 17 O 1.21352 * 119.99309 * 6.12153 * 16 14 13 18 18 N 1.34769 * 120.00224 * 186.12458 * 16 14 13 19 19 C 1.46925 * 120.63278 * 186.81044 * 18 16 14 20 20 C 1.53626 * 108.54393 * 126.36623 * 19 18 16 21 21 C 1.53038 * 109.24252 * 54.86097 * 20 19 18 22 22 C 1.53000 * 109.44524 * 178.49750 * 21 20 19 23 23 C 1.53043 * 109.53332 * 298.50855 * 21 20 19 24 24 C 1.46930 * 120.63214 * 7.08444 * 18 16 14 25 25 H 1.08990 * 109.47358 * 59.99526 * 1 2 3 26 26 H 1.09004 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47174 * 299.99417 * 1 2 3 28 28 H 1.09001 * 109.47077 * 240.00035 * 2 1 3 29 29 H 1.09007 * 109.47345 * 120.00251 * 2 1 3 30 30 H 0.97000 * 119.99791 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00609 * 94.99809 * 13 3 2 32 32 H 1.08996 * 109.58938 * 246.20297 * 19 18 16 33 33 H 1.09005 * 109.58592 * 6.62600 * 19 18 16 34 34 H 1.08995 * 109.63413 * 294.86210 * 20 19 18 35 35 H 1.09008 * 109.42859 * 174.72811 * 20 19 18 36 36 H 1.09000 * 109.46015 * 58.52910 * 21 20 19 37 37 H 1.09006 * 109.46641 * 180.02562 * 22 21 20 38 38 H 1.08997 * 109.47263 * 300.05193 * 22 21 20 39 39 H 1.09001 * 109.47412 * 60.06404 * 22 21 20 40 40 H 1.09004 * 109.49775 * 301.41461 * 23 21 20 41 41 H 1.09000 * 109.49748 * 181.32026 * 23 21 20 42 42 H 1.08997 * 109.58329 * 353.37849 * 24 18 16 43 43 H 1.09004 * 109.58432 * 113.65629 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4061 0.3367 -2.1729 9 14 6.0050 0.8800 -1.3811 10 1 6.5538 -0.3520 -0.7599 11 1 6.3835 0.9215 -2.8165 12 1 6.5576 2.0719 -0.6889 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6644 1.3671 15 8 -0.3380 2.6366 0.4321 16 6 0.0396 3.3320 2.6443 17 8 0.8508 3.4620 3.5375 18 7 -1.2179 3.7897 2.8041 19 6 -1.5827 4.5780 3.9891 20 6 -2.2269 5.8922 3.5224 21 6 -3.4007 5.5761 2.5926 22 6 -4.0691 6.8808 2.1546 23 6 -2.8896 4.8263 1.3602 24 6 -2.2516 3.5048 1.7996 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8293 -0.0617 -2.9496 31 1 2.2720 2.1231 1.9978 32 1 -2.2914 4.0163 4.5977 33 1 -0.6883 4.7951 4.5731 34 1 -1.4902 6.4915 2.9876 35 1 -2.5881 6.4467 4.3886 36 1 -4.1253 4.9561 3.1203 37 1 -4.9055 6.6561 1.4926 38 1 -4.4332 7.4150 3.0322 39 1 -3.3448 7.5008 1.6263 40 1 -2.1466 5.4357 0.8456 41 1 -3.7225 4.6221 0.6873 42 1 -1.7986 3.0135 0.9385 43 1 -3.0125 2.8553 2.2324 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330417765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:05 Heat of formation + Delta-G solvation = -73.195526 kcal Electronic energy + Delta-G solvation = -23296.216992 eV Core-core repulsion = 19955.375786 eV Total energy + Delta-G solvation = -3340.841206 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58504 -38.58465 -37.53067 -35.43732 -33.83297 -32.40693 -31.08962 -30.99192 -28.50327 -27.24691 -24.88899 -23.32546 -23.18475 -22.08930 -20.56183 -19.60544 -19.38606 -17.66249 -16.63970 -16.08723 -15.57867 -15.38646 -14.80743 -14.71212 -14.44080 -14.29739 -14.17396 -13.66318 -13.24292 -13.12334 -12.76781 -12.73358 -12.12103 -11.95965 -11.85386 -11.59729 -11.35298 -11.33559 -11.19098 -11.00532 -10.91675 -10.84983 -10.50871 -10.45043 -10.33543 -10.15765 -9.70088 -9.14211 -8.67247 -8.58678 -8.43469 -8.04477 -6.17816 -4.27341 1.91592 2.79382 3.23639 3.30648 3.33965 3.74062 4.05036 4.32850 4.62307 4.69065 4.72341 5.03878 5.08860 5.14473 5.23352 5.37959 5.43652 5.51416 5.55797 5.70776 5.74712 5.84799 5.91602 6.03226 6.05698 6.22053 6.30248 6.34481 6.36253 6.51797 6.58806 6.93730 7.04465 7.23832 7.28225 7.34353 7.49309 7.63152 7.78264 8.03756 8.08149 8.47456 8.64599 8.87954 9.39551 10.87501 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028514 B = 0.004017 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.737357 B = 6967.858690 C = 7224.947707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.266 3.734 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.665 5.665 14 C 0.496 3.504 15 O -0.521 6.521 16 C 0.506 3.494 17 O -0.531 6.531 18 N -0.585 5.585 19 C 0.106 3.894 20 C -0.127 4.127 21 C -0.096 4.096 22 C -0.146 4.146 23 C -0.124 4.124 24 C 0.046 3.954 25 H 0.052 0.948 26 H 0.026 0.974 27 H 0.035 0.965 28 H 0.104 0.896 29 H 0.034 0.966 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.166 0.834 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.736 7.671 8.490 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.166 3.834 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.313 5.313 14 C 0.277 3.723 15 O -0.402 6.402 16 C 0.290 3.710 17 O -0.408 6.408 18 N -0.319 5.319 19 C -0.016 4.016 20 C -0.166 4.166 21 C -0.115 4.115 22 C -0.203 4.203 23 C -0.162 4.162 24 C -0.075 4.075 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.122 0.878 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.237 0.763 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.182 0.818 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.777 7.600 8.101 16.930 hybrid contribution 1.071 0.079 0.381 1.140 sum -11.706 7.679 8.482 16.369 Atomic orbital electron populations 1.21859 0.98308 0.98461 1.01006 1.21963 0.92668 0.99379 1.02772 1.19026 0.94809 0.89404 0.80209 0.92662 1.21218 0.90370 1.39380 1.06553 0.91786 1.24865 0.98811 0.94612 0.95225 1.69885 1.35235 1.37438 1.09369 0.86412 0.84576 0.78584 0.77372 1.20466 1.21034 1.19763 1.46497 1.13546 1.52038 1.19194 1.19855 0.84128 0.80719 0.87621 1.90233 1.49334 1.60372 1.40291 1.20641 0.82290 0.79682 0.88422 1.90700 1.50636 1.56796 1.42619 1.47957 1.09265 1.51911 1.22773 1.21753 1.00783 0.91548 0.87525 1.22045 0.97878 0.96955 0.99686 1.21186 0.96737 0.96916 0.96628 1.21823 1.00408 0.97069 1.01019 1.21907 1.00516 0.96731 0.97024 1.23344 0.90961 0.97575 0.95621 0.92863 0.95469 0.94619 0.87831 0.94700 0.92462 0.76350 0.91474 0.89075 0.91427 0.90925 0.91251 0.92652 0.92905 0.92686 0.91469 0.90871 0.81840 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.52 37.16 0.32 -2.57 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.50 2.24 -69.08 -0.15 6.34 16 4 H 0.06 1.52 7.57 -51.93 -0.39 1.13 16 5 C -0.54 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.96 11.29 55.43 0.63 -23.34 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.67 -14.13 5.01 -55.36 -0.28 -14.41 16 14 C 0.50 9.83 6.34 -11.58 -0.07 9.76 16 15 O -0.52 -10.66 10.26 5.49 0.06 -10.61 16 16 C 0.51 9.07 7.74 -11.59 -0.09 8.98 16 17 O -0.53 -10.35 15.94 5.50 0.09 -10.26 16 18 N -0.59 -8.63 2.97 -173.01 -0.51 -9.14 16 19 C 0.11 1.27 6.44 -3.49 -0.02 1.25 16 20 C -0.13 -1.27 5.38 -26.39 -0.14 -1.41 16 21 C -0.10 -0.91 2.68 -90.58 -0.24 -1.15 16 22 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 23 C -0.12 -1.40 5.36 -26.61 -0.14 -1.54 16 24 C 0.05 0.61 6.27 -3.71 -0.02 0.59 16 25 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.03 0.71 5.65 -51.93 -0.29 0.42 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 31 H 0.40 8.16 8.03 -40.82 -0.33 7.83 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.18 7.05 -51.93 -0.37 0.81 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.17 2.65 3.78 -56.76 -0.21 2.43 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 335.59 15.07 5.06 5.06 Total: -1.00 -27.68 335.59 -7.68 -35.36 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.93 Total: 8.30 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -0.77 Total: 3.64 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.16 Total: -46.88 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.14 Total: -20.87 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.68 -7.68 -35.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330417765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.835 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds