Wall clock time and date at job start Tue Mar 31 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47054 * 2 1 4 4 H 1.08991 * 109.47258 * 304.99863 * 3 2 1 5 5 C 1.50708 * 109.46967 * 184.99932 * 3 2 1 6 6 H 1.08001 * 119.99857 * 240.00170 * 5 3 2 7 7 C 1.37871 * 119.99892 * 60.00419 * 5 3 2 8 8 N 1.31524 * 120.00040 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00079 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47269 * 89.99835 * 9 7 5 11 11 H 1.48506 * 109.47130 * 210.00115 * 9 7 5 12 12 H 1.48500 * 109.47119 * 329.99575 * 9 7 5 13 13 N 1.46500 * 109.47112 * 65.00434 * 3 2 1 14 14 C 1.34776 * 120.00008 * 274.99713 * 13 3 2 15 15 O 1.21355 * 119.99660 * 359.72928 * 14 13 3 16 16 C 1.49452 * 120.00360 * 179.97438 * 14 13 3 17 17 O 1.21352 * 119.99309 * 6.12153 * 16 14 13 18 18 N 1.34769 * 120.00224 * 186.12458 * 16 14 13 19 19 C 1.46925 * 120.63278 * 186.81044 * 18 16 14 20 20 C 1.53626 * 108.54393 * 126.36623 * 19 18 16 21 21 C 1.53038 * 109.24252 * 54.86097 * 20 19 18 22 22 C 1.53000 * 109.44524 * 178.49750 * 21 20 19 23 23 C 1.53043 * 109.53332 * 298.50855 * 21 20 19 24 24 C 1.46930 * 120.63214 * 7.08444 * 18 16 14 25 25 H 1.08990 * 109.47358 * 59.99526 * 1 2 3 26 26 H 1.09004 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47174 * 299.99417 * 1 2 3 28 28 H 1.09001 * 109.47077 * 240.00035 * 2 1 3 29 29 H 1.09007 * 109.47345 * 120.00251 * 2 1 3 30 30 H 0.97000 * 119.99791 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00609 * 94.99809 * 13 3 2 32 32 H 1.08996 * 109.58938 * 246.20297 * 19 18 16 33 33 H 1.09005 * 109.58592 * 6.62600 * 19 18 16 34 34 H 1.08995 * 109.63413 * 294.86210 * 20 19 18 35 35 H 1.09008 * 109.42859 * 174.72811 * 20 19 18 36 36 H 1.09000 * 109.46015 * 58.52910 * 21 20 19 37 37 H 1.09006 * 109.46641 * 180.02562 * 22 21 20 38 38 H 1.08997 * 109.47263 * 300.05193 * 22 21 20 39 39 H 1.09001 * 109.47412 * 60.06404 * 22 21 20 40 40 H 1.09004 * 109.49775 * 301.41461 * 23 21 20 41 41 H 1.09000 * 109.49748 * 181.32026 * 23 21 20 42 42 H 1.08997 * 109.58329 * 353.37849 * 24 18 16 43 43 H 1.09004 * 109.58432 * 113.65629 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4061 0.3367 -2.1729 9 14 6.0050 0.8800 -1.3811 10 1 6.5538 -0.3520 -0.7599 11 1 6.3835 0.9215 -2.8165 12 1 6.5576 2.0719 -0.6889 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6644 1.3671 15 8 -0.3380 2.6366 0.4321 16 6 0.0396 3.3320 2.6443 17 8 0.8508 3.4620 3.5375 18 7 -1.2179 3.7897 2.8041 19 6 -1.5827 4.5780 3.9891 20 6 -2.2269 5.8922 3.5224 21 6 -3.4007 5.5761 2.5926 22 6 -4.0691 6.8808 2.1546 23 6 -2.8896 4.8263 1.3602 24 6 -2.2516 3.5048 1.7996 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8293 -0.0617 -2.9496 31 1 2.2720 2.1231 1.9978 32 1 -2.2914 4.0163 4.5977 33 1 -0.6883 4.7951 4.5731 34 1 -1.4902 6.4915 2.9876 35 1 -2.5881 6.4467 4.3886 36 1 -4.1253 4.9561 3.1203 37 1 -4.9055 6.6561 1.4926 38 1 -4.4332 7.4150 3.0322 39 1 -3.3448 7.5008 1.6263 40 1 -2.1466 5.4357 0.8456 41 1 -3.7225 4.6221 0.6873 42 1 -1.7986 3.0135 0.9385 43 1 -3.0125 2.8553 2.2324 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330417765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:04 Heat of formation + Delta-G solvation = -90.157981 kcal Electronic energy + Delta-G solvation = -23296.952539 eV Core-core repulsion = 19955.375786 eV Total energy + Delta-G solvation = -3341.576753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99310 -39.98409 -38.77563 -37.18248 -34.99380 -34.24270 -32.80201 -32.05729 -29.54880 -29.03903 -26.28653 -24.87936 -24.32563 -23.35817 -21.85178 -21.36116 -20.57549 -19.17714 -18.06941 -17.87735 -17.10031 -17.00258 -16.40814 -15.87228 -15.72169 -15.51694 -15.09374 -15.01627 -14.61482 -14.48426 -14.34504 -13.89416 -13.59158 -13.43335 -13.19731 -12.92119 -12.77558 -12.72785 -12.67688 -12.47323 -12.20813 -12.13732 -12.07459 -11.80759 -11.59776 -11.39510 -11.32853 -11.09974 -10.57543 -9.94486 -9.85470 -9.74076 -8.18691 -6.35543 0.42006 1.41720 1.44800 1.47596 1.56718 2.21840 2.39254 2.68537 3.10988 3.46262 3.83391 3.86346 3.90467 4.14431 4.33626 4.44962 4.50066 4.56408 4.57416 4.71241 4.76039 4.78180 4.88836 4.91554 5.00488 5.04479 5.06491 5.12306 5.18767 5.24177 5.36750 5.38878 5.40658 5.52805 5.55260 5.61516 5.74693 5.83406 6.06754 6.13522 6.52653 6.68182 6.86739 7.15832 7.36863 8.86284 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028514 B = 0.004017 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.737357 B = 6967.858690 C = 7224.947707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 C 0.276 3.724 4 H 0.017 0.983 5 C -0.556 4.556 6 H 0.065 0.935 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.270 1.270 13 N -0.671 5.671 14 C 0.494 3.506 15 O -0.530 6.530 16 C 0.506 3.494 17 O -0.552 6.552 18 N -0.575 5.575 19 C 0.101 3.899 20 C -0.122 4.122 21 C -0.092 4.092 22 C -0.143 4.143 23 C -0.120 4.120 24 C 0.043 3.957 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.267 0.733 31 H 0.406 0.594 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.139 0.861 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.035 8.320 9.891 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.594 4.594 6 H 0.083 0.917 7 C -0.178 4.178 8 N -0.546 5.546 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.320 5.320 14 C 0.276 3.724 15 O -0.411 6.411 16 C 0.289 3.711 17 O -0.431 6.431 18 N -0.308 5.308 19 C -0.020 4.020 20 C -0.160 4.160 21 C -0.110 4.110 22 C -0.200 4.200 23 C -0.158 4.158 24 C -0.077 4.077 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.241 0.759 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.155 0.845 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.128 8.272 9.515 18.936 hybrid contribution 1.363 -0.084 -0.064 1.367 sum -12.765 8.188 9.451 17.869 Atomic orbital electron populations 1.21702 0.96340 0.99738 1.00498 1.21813 0.94373 0.98415 1.01588 1.18642 0.93998 0.89643 0.80340 0.96558 1.21528 0.91384 1.39568 1.06884 0.91663 1.25656 1.03109 0.94170 0.94854 1.70008 1.36931 1.37904 1.09766 0.85411 0.79320 0.78737 0.77287 1.19715 1.20800 1.19417 1.46307 1.14484 1.52869 1.18313 1.20286 0.83409 0.80192 0.88537 1.90288 1.49475 1.60301 1.41046 1.20187 0.83430 0.80190 0.87291 1.90690 1.51491 1.58100 1.42825 1.48098 1.08181 1.50726 1.23750 1.22040 1.01078 0.92460 0.86411 1.22042 0.97580 0.95691 1.00714 1.21177 0.96753 0.97598 0.95488 1.21790 1.00266 0.96231 1.01723 1.21887 1.00335 0.95376 0.98239 1.23295 0.90768 0.99108 0.94570 0.94272 0.93229 0.94104 0.90279 0.94398 0.92358 0.75887 0.89036 0.90158 0.92990 0.88149 0.89696 0.91976 0.91432 0.93535 0.93470 0.89370 0.84509 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.24 8.52 71.98 0.61 -4.62 16 2 C -0.12 -5.87 5.45 30.59 0.17 -5.70 16 3 C 0.28 13.92 2.24 44.25 0.10 14.01 16 4 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 5 C -0.56 -29.57 8.73 25.60 0.22 -29.35 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 1.23 5.29 84.65 0.45 1.67 16 8 N -0.91 -50.40 11.29 21.45 0.24 -50.16 16 9 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 N -0.67 -29.28 5.01 -447.43 -2.24 -31.52 16 14 C 0.49 19.96 6.34 87.27 0.55 20.52 16 15 O -0.53 -22.24 10.26 -3.26 -0.03 -22.28 16 16 C 0.51 18.11 7.74 87.27 0.68 18.79 16 17 O -0.55 -21.53 15.94 -3.25 -0.05 -21.58 16 18 N -0.57 -16.28 2.97 -819.65 -2.43 -18.71 16 19 C 0.10 2.19 6.44 86.51 0.56 2.75 16 20 C -0.12 -2.10 5.38 30.82 0.17 -1.93 16 21 C -0.09 -1.45 2.68 -10.77 -0.03 -1.48 16 22 C -0.14 -1.90 9.19 71.98 0.66 -1.24 16 23 C -0.12 -2.51 5.36 30.67 0.16 -2.34 16 24 C 0.04 1.10 6.27 86.36 0.54 1.64 16 25 H 0.04 1.71 7.85 -2.39 -0.02 1.69 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.04 1.63 5.65 -2.39 -0.01 1.62 16 28 H 0.08 4.19 5.95 -2.39 -0.01 4.18 16 29 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.41 16.88 8.03 -92.71 -0.74 16.14 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.95 7.05 -2.38 -0.02 1.94 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.22 8.14 -2.38 -0.02 1.21 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.14 4.40 3.78 -78.86 -0.30 4.11 16 43 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -60.49 335.59 2.32 -58.17 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.03 Total: 29.27 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 4.84 Total: 12.70 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -4.43 Total: -100.40 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -0.09 Total: -43.85 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -60.49 2.32 -58.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330417765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.987 kcal (2) G-P(sol) polarization free energy of solvation -60.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds