Wall clock time and date at job start Tue Mar 31 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46785 * 2 1 4 4 H 1.09001 * 109.47686 * 304.99817 * 3 2 1 5 5 C 1.50702 * 109.46902 * 184.99893 * 3 2 1 6 6 H 1.08006 * 120.00077 * 239.99774 * 5 3 2 7 7 C 1.37871 * 120.00246 * 60.00282 * 5 3 2 8 8 N 1.31514 * 120.00014 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00325 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46896 * 89.99551 * 9 7 5 11 11 H 1.48497 * 109.47136 * 209.99603 * 9 7 5 12 12 H 1.48502 * 109.46816 * 329.99792 * 9 7 5 13 13 N 1.46504 * 109.47387 * 64.99975 * 3 2 1 14 14 C 1.34774 * 120.00114 * 275.27564 * 13 3 2 15 15 O 1.21346 * 119.99935 * 359.72273 * 14 13 3 16 16 C 1.49449 * 120.00082 * 179.71973 * 14 13 3 17 17 O 1.21347 * 119.99906 * 353.07222 * 16 14 13 18 18 N 1.34781 * 119.99930 * 173.06650 * 16 14 13 19 19 C 1.46924 * 120.63026 * 1.67783 * 18 16 14 20 20 C 1.52765 * 109.00767 * 233.58448 * 19 18 16 21 21 C 1.53041 * 109.37668 * 305.58532 * 20 19 18 22 22 C 1.53036 * 109.54032 * 61.24268 * 21 20 19 23 23 H 1.09007 * 109.49870 * 58.58367 * 22 21 20 24 24 C 1.53006 * 109.49927 * 178.67718 * 22 21 20 25 25 C 1.46925 * 120.63155 * 181.95134 * 18 16 14 26 26 H 1.08999 * 109.46660 * 60.00109 * 1 2 3 27 27 H 1.08993 * 109.46670 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47017 * 300.00087 * 1 2 3 29 29 H 1.08993 * 109.47251 * 240.00411 * 2 1 3 30 30 H 1.08999 * 109.46660 * 119.99891 * 2 1 3 31 31 H 0.97000 * 120.00823 * 180.02562 * 8 7 5 32 32 H 0.97002 * 119.99683 * 94.99377 * 13 3 2 33 33 H 1.09000 * 109.58549 * 353.41105 * 19 18 16 34 34 H 1.09000 * 109.59086 * 113.83946 * 19 18 16 35 35 H 1.08994 * 109.56421 * 185.55416 * 20 19 18 36 36 H 1.09001 * 109.36171 * 65.49339 * 20 19 18 37 37 H 1.09003 * 109.46533 * 301.21926 * 21 20 19 38 38 H 1.09002 * 109.45661 * 181.26432 * 21 20 19 39 39 H 1.08996 * 109.47096 * 179.83543 * 24 22 21 40 40 H 1.08998 * 109.47116 * 299.83898 * 24 22 21 41 41 H 1.08999 * 109.46585 * 59.83888 * 24 22 21 42 42 H 1.08996 * 109.58820 * 246.16267 * 25 18 16 43 43 H 1.09006 * 109.58176 * 6.44618 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4064 0.3367 -2.1728 9 14 6.0051 0.8801 -1.3810 10 1 6.5539 -0.3519 -0.7596 11 1 6.3837 0.9215 -2.8163 12 1 6.5576 2.0721 -0.6887 13 7 1.6524 2.0975 1.2518 14 6 0.4330 2.6595 1.3689 15 8 -0.3419 2.6274 0.4357 16 6 0.0353 3.3223 2.6480 17 8 0.7569 3.2461 3.6207 18 7 -1.1247 4.0046 2.7212 19 6 -2.0261 4.0750 1.5631 20 6 -2.3349 5.5403 1.2613 21 6 -2.8781 6.2150 2.5230 22 6 -1.8211 6.1601 3.6283 23 1 -0.9130 6.6580 3.2884 24 6 -2.3526 6.8638 4.8787 25 6 -1.5091 4.6971 3.9586 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8294 -0.0617 -2.9495 32 1 2.2719 2.1232 1.9978 33 1 -1.5454 3.6187 0.6977 34 1 -2.9531 3.5480 1.7889 35 1 -3.0793 5.6004 0.4674 36 1 -1.4220 6.0441 0.9437 37 1 -3.7773 5.6955 2.8543 38 1 -3.1201 7.2549 2.3032 39 1 -1.6006 6.8218 5.6665 40 1 -2.5745 7.9046 4.6432 41 1 -3.2614 6.3661 5.2170 42 1 -2.3930 4.2219 4.3839 43 1 -0.6882 4.6490 4.6743 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330431090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:12 Heat of formation + Delta-G solvation = -72.777329 kcal Electronic energy + Delta-G solvation = -23289.831386 eV Core-core repulsion = 19949.008314 eV Total energy + Delta-G solvation = -3340.823071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60594 -38.62766 -37.47980 -35.45665 -33.65362 -32.40027 -31.86605 -30.98789 -27.51430 -27.01092 -25.88848 -23.63567 -22.49381 -22.28585 -20.44308 -19.60326 -19.48527 -17.52856 -16.63321 -16.07371 -15.73561 -15.39190 -15.12433 -14.75575 -14.42545 -14.16956 -14.06175 -13.60356 -13.30704 -13.01517 -12.75398 -12.68736 -12.25214 -12.10632 -11.84955 -11.60337 -11.35192 -11.28639 -11.13655 -10.99272 -10.95353 -10.85140 -10.52312 -10.41943 -10.35480 -10.20847 -9.68319 -9.14158 -8.62965 -8.57576 -8.50821 -8.01070 -6.18020 -4.27677 1.92524 2.77944 3.23399 3.30413 3.33512 3.73868 4.04462 4.32569 4.57361 4.66304 4.78209 5.01699 5.06739 5.14311 5.25614 5.36330 5.38505 5.51027 5.59205 5.64543 5.71356 5.86709 5.93998 5.98276 6.05303 6.24500 6.30922 6.32223 6.37713 6.51462 6.59722 6.95093 7.05692 7.24390 7.28458 7.34999 7.49723 7.62870 7.78321 8.03837 8.08318 8.47179 8.64215 8.87652 9.39234 10.87281 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.004057 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.920554 B = 6900.349344 C = 7207.864541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.665 5.665 14 C 0.497 3.503 15 O -0.521 6.521 16 C 0.506 3.494 17 O -0.532 6.532 18 N -0.584 5.584 19 C 0.044 3.956 20 C -0.133 4.133 21 C -0.116 4.116 22 C -0.107 4.107 23 H 0.074 0.926 24 C -0.144 4.144 25 C 0.111 3.889 26 H 0.052 0.948 27 H 0.026 0.974 28 H 0.035 0.965 29 H 0.103 0.897 30 H 0.034 0.966 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.168 0.832 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 9.076 8.823 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.166 3.834 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.313 5.313 14 C 0.277 3.723 15 O -0.402 6.402 16 C 0.289 3.711 17 O -0.408 6.408 18 N -0.317 5.317 19 C -0.076 4.076 20 C -0.172 4.172 21 C -0.154 4.154 22 C -0.126 4.126 23 H 0.093 0.907 24 C -0.202 4.202 25 C -0.012 4.012 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.122 0.878 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.183 0.817 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.605 8.877 8.476 16.891 hybrid contribution 1.072 0.083 0.371 1.137 sum -10.533 8.961 8.847 16.417 Atomic orbital electron populations 1.21860 0.98268 0.98440 1.01061 1.21965 0.92691 0.99380 1.02761 1.19029 0.94795 0.89430 0.80163 0.92666 1.21211 0.90355 1.39432 1.06548 0.91799 1.24862 0.98801 0.94600 0.95225 1.69878 1.35253 1.37401 1.09370 0.86415 0.84582 0.78591 0.77372 1.20458 1.21031 1.19768 1.46493 1.13279 1.52331 1.19149 1.19834 0.84070 0.80935 0.87419 1.90212 1.49878 1.59504 1.40621 1.20635 0.81264 0.79689 0.89473 1.90698 1.51829 1.60272 1.38044 1.47971 1.19768 1.49739 1.14267 1.23336 0.94827 0.97141 0.92321 1.21838 1.01498 0.96360 0.97456 1.21628 0.97895 1.00681 0.95158 1.21500 0.99446 0.95535 0.96142 0.90746 1.21761 1.01101 1.00239 0.97063 1.21731 1.01153 0.91362 0.86924 0.92893 0.95510 0.94547 0.87850 0.94690 0.92449 0.76339 0.81689 0.92217 0.90707 0.91685 0.91935 0.91957 0.92410 0.92365 0.92535 0.91492 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.51 2.24 -69.08 -0.15 6.35 16 4 H 0.06 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.32 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.67 -14.13 5.02 -55.36 -0.28 -14.40 16 14 C 0.50 9.85 6.36 -11.59 -0.07 9.77 16 15 O -0.52 -10.66 10.14 5.50 0.06 -10.60 16 16 C 0.51 9.09 7.76 -11.58 -0.09 9.00 16 17 O -0.53 -10.38 15.91 5.50 0.09 -10.29 16 18 N -0.58 -8.68 2.98 -173.54 -0.52 -9.20 16 19 C 0.04 0.60 6.20 -3.93 -0.02 0.58 16 20 C -0.13 -1.49 6.07 -26.83 -0.16 -1.65 16 21 C -0.12 -1.10 5.17 -26.69 -0.14 -1.23 16 22 C -0.11 -1.08 2.87 -90.50 -0.26 -1.34 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 C -0.14 -1.13 9.20 37.16 0.34 -0.79 16 25 C 0.11 1.35 5.72 -3.71 -0.02 1.33 16 26 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.75 5.63 -51.93 -0.29 0.46 16 29 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.40 8.16 8.03 -40.82 -0.33 7.83 16 33 H 0.17 2.69 3.79 -56.97 -0.22 2.47 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -27.61 335.35 -7.72 -35.33 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.92 Total: 8.44 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.81 Total: 3.64 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.17 Total: -46.92 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.14 Total: -20.89 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.61 -7.72 -35.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330431090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.447 kcal (2) G-P(sol) polarization free energy of solvation -27.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds