Wall clock time and date at job start Tue Mar 31 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47005 * 2 1 4 4 H 1.09005 * 109.46767 * 55.00187 * 3 2 1 5 5 C 1.50699 * 109.47168 * 175.00120 * 3 2 1 6 6 H 1.07999 * 120.00382 * 119.99783 * 5 3 2 7 7 C 1.37880 * 119.99853 * 300.00249 * 5 3 2 8 8 N 1.31508 * 120.00013 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99719 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46999 * 59.99927 * 9 7 5 11 11 H 1.48504 * 109.46923 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46931 * 299.99810 * 9 7 5 13 13 N 1.46502 * 109.47002 * 295.00124 * 3 2 1 14 14 C 1.34776 * 119.99628 * 85.00295 * 13 3 2 15 15 O 1.21341 * 120.00286 * 359.97438 * 14 13 3 16 16 C 1.49454 * 119.99374 * 179.97438 * 14 13 3 17 17 O 1.21346 * 120.00443 * 6.76833 * 16 14 13 18 18 N 1.34777 * 119.99584 * 186.76091 * 16 14 13 19 19 C 1.46931 * 120.62969 * 188.38927 * 18 16 14 20 20 C 1.52763 * 109.00851 * 233.58764 * 19 18 16 21 21 C 1.53037 * 109.38252 * 305.58953 * 20 19 18 22 22 C 1.53044 * 109.54230 * 61.24051 * 21 20 19 23 23 H 1.09000 * 109.49424 * 58.58560 * 22 21 20 24 24 C 1.52994 * 109.50024 * 178.68290 * 22 21 20 25 25 C 1.46928 * 120.63339 * 8.67439 * 18 16 14 26 26 H 1.08997 * 109.47324 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47493 * 299.99720 * 1 2 3 28 28 H 1.08994 * 109.47525 * 59.99848 * 1 2 3 29 29 H 1.08998 * 109.47031 * 240.00423 * 2 1 3 30 30 H 1.08994 * 109.47525 * 120.00152 * 2 1 3 31 31 H 0.97009 * 119.99928 * 180.02562 * 8 7 5 32 32 H 0.96996 * 119.99777 * 264.99695 * 13 3 2 33 33 H 1.09001 * 109.58416 * 353.42224 * 19 18 16 34 34 H 1.09000 * 109.58705 * 113.85037 * 19 18 16 35 35 H 1.08997 * 109.56429 * 185.55469 * 20 19 18 36 36 H 1.09002 * 109.35977 * 65.49557 * 20 19 18 37 37 H 1.09002 * 109.46265 * 301.21802 * 21 20 19 38 38 H 1.08999 * 109.46104 * 181.26177 * 21 20 19 39 39 H 1.09000 * 109.47013 * 179.83701 * 24 22 21 40 40 H 1.08998 * 109.47168 * 299.84080 * 24 22 21 41 41 H 1.09007 * 109.47229 * 59.83692 * 24 22 21 42 42 H 1.08999 * 109.58445 * 246.15619 * 25 18 16 43 43 H 1.08999 * 109.58238 * 6.43286 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 3.4062 0.3366 2.1727 9 14 6.0050 0.8801 1.3810 10 1 6.5004 2.2800 1.3807 11 1 6.3979 0.2168 2.6503 12 1 6.5966 0.1453 0.2341 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3668 15 8 -0.3401 2.6319 -0.4338 16 6 0.0398 3.3331 -2.6437 17 8 0.7624 3.2601 -3.6158 18 7 -1.1193 4.0170 -2.7155 19 6 -1.6113 4.5231 -4.0042 20 6 -1.8884 6.0201 -3.8778 21 6 -2.8381 6.2633 -2.7026 22 6 -2.1828 5.7805 -1.4065 23 1 -1.2424 6.3104 -1.2550 24 6 -3.1194 6.0541 -0.2281 25 6 -1.9119 4.2760 -1.5058 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8293 -0.0613 2.9497 32 1 2.2718 2.1232 -1.9977 33 1 -0.8579 4.3561 -4.7740 34 1 -2.5321 4.0053 -4.2726 35 1 -2.3461 6.3854 -4.7970 36 1 -0.9507 6.5476 -3.7029 37 1 -3.7661 5.7155 -2.8662 38 1 -3.0544 7.3288 -2.6251 39 1 -2.6535 5.7074 0.6944 40 1 -3.3120 7.1246 -0.1579 41 1 -4.0601 5.5250 -0.3811 42 1 -2.8577 3.7376 -1.5663 43 1 -1.3578 3.9437 -0.6279 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330431091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:15 Heat of formation + Delta-G solvation = -76.702073 kcal Electronic energy + Delta-G solvation = -23377.215888 eV Core-core repulsion = 20036.222627 eV Total energy + Delta-G solvation = -3340.993261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58103 -38.57564 -37.51330 -35.35599 -33.53727 -32.46953 -32.02275 -30.97092 -27.36004 -26.84324 -25.92921 -23.85921 -22.86219 -21.75018 -20.40637 -19.59918 -19.40207 -17.61755 -16.65536 -16.08807 -15.73872 -15.36958 -14.92398 -14.80859 -14.39727 -14.15833 -14.07455 -13.52518 -13.39961 -12.88804 -12.74245 -12.70664 -12.18990 -12.05995 -11.83379 -11.58613 -11.31365 -11.25748 -11.08842 -10.97096 -10.85037 -10.81881 -10.69423 -10.44367 -10.33385 -10.22591 -9.66968 -9.14170 -8.68906 -8.57613 -8.53765 -7.97956 -6.16993 -4.26652 1.93076 2.78123 3.25465 3.30265 3.32689 3.74104 4.04698 4.33357 4.61071 4.74365 4.79333 4.92778 5.10116 5.15448 5.20418 5.41782 5.43632 5.55003 5.61375 5.64554 5.79633 5.81764 5.97710 5.98328 6.10695 6.19704 6.32247 6.34062 6.38708 6.52314 6.59354 6.96441 7.06935 7.23523 7.28889 7.31441 7.50818 7.63715 7.79379 8.03349 8.09275 8.49436 8.65073 8.88780 9.40144 10.88258 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.004250 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.464363 B = 6586.649869 C = 6774.885156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.667 5.667 14 C 0.495 3.505 15 O -0.524 6.524 16 C 0.507 3.493 17 O -0.531 6.531 18 N -0.588 5.588 19 C 0.106 3.894 20 C -0.133 4.133 21 C -0.116 4.116 22 C -0.109 4.109 23 H 0.072 0.928 24 C -0.143 4.143 25 C 0.073 3.927 26 H 0.025 0.975 27 H 0.052 0.948 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.103 0.897 31 H 0.266 0.734 32 H 0.401 0.599 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.818 9.051 -7.858 16.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.315 5.315 14 C 0.275 3.725 15 O -0.404 6.404 16 C 0.290 3.710 17 O -0.407 6.407 18 N -0.321 5.321 19 C -0.016 4.016 20 C -0.172 4.172 21 C -0.153 4.153 22 C -0.128 4.128 23 H 0.090 0.910 24 C -0.201 4.201 25 C -0.048 4.048 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.236 0.764 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.916 8.845 -7.513 16.634 hybrid contribution 1.111 0.049 -0.372 1.173 sum -10.805 8.894 -7.885 16.064 Atomic orbital electron populations 1.21850 0.98271 0.98381 1.01061 1.21960 0.92678 0.99426 1.02720 1.19005 0.94724 0.89413 0.80185 0.92732 1.21176 0.90374 1.39484 1.06549 0.91870 1.24860 0.98771 0.94581 0.95240 1.69872 1.35336 1.37375 1.09337 0.86477 0.84595 0.78405 0.77483 1.20121 1.21093 1.20058 1.46492 1.13423 1.52488 1.19101 1.19820 0.84089 0.81222 0.87408 1.90429 1.50479 1.59269 1.40259 1.20717 0.81169 0.79427 0.89655 1.90695 1.50906 1.60541 1.38553 1.47939 1.21809 1.53150 1.09230 1.21575 0.99950 0.93996 0.86088 1.21827 1.00397 0.96015 0.98929 1.21619 0.98345 1.01010 0.94355 1.21543 0.99469 0.96741 0.95054 0.90963 1.21727 0.99191 1.01235 0.97903 1.22996 0.97356 0.94509 0.89935 0.95558 0.92930 0.94552 0.94716 0.87885 0.92406 0.76425 0.89007 0.91457 0.90801 0.91482 0.91855 0.91906 0.91948 0.92670 0.92612 0.91835 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.15 0.32 -2.64 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.57 2.24 -69.08 -0.15 6.42 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.03 11.29 55.43 0.63 -23.40 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 13 N -0.67 -14.27 5.01 -55.36 -0.28 -14.55 16 14 C 0.49 9.87 6.31 -11.58 -0.07 9.80 16 15 O -0.52 -10.85 10.32 5.50 0.06 -10.79 16 16 C 0.51 9.11 7.73 -11.58 -0.09 9.02 16 17 O -0.53 -10.34 15.93 5.50 0.09 -10.25 16 18 N -0.59 -8.67 2.98 -173.53 -0.52 -9.19 16 19 C 0.11 1.26 6.42 -3.93 -0.03 1.23 16 20 C -0.13 -1.29 6.06 -26.83 -0.16 -1.45 16 21 C -0.12 -1.07 5.17 -26.69 -0.14 -1.20 16 22 C -0.11 -1.20 2.87 -90.50 -0.26 -1.46 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 C -0.14 -1.36 9.20 37.15 0.34 -1.02 16 25 C 0.07 0.99 5.27 -3.71 -0.02 0.97 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 1.16 7.85 -51.92 -0.41 0.76 16 28 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 2.68 5.95 -51.93 -0.31 2.38 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.40 8.20 8.03 -40.82 -0.33 7.87 16 33 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.15 2.39 4.31 -54.79 -0.24 2.15 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -27.86 335.76 -7.74 -35.60 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.94 Total: 8.29 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.81 Total: 3.84 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.17 Total: -47.14 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.14 Total: -21.04 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.86 -7.74 -35.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330431091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.106 kcal (2) G-P(sol) polarization free energy of solvation -27.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds