Wall clock time and date at job start Tue Mar 31 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46840 * 2 1 4 4 H 1.09011 * 109.47278 * 54.99987 * 3 2 1 5 5 C 1.50698 * 109.47067 * 174.99509 * 3 2 1 6 6 H 1.08003 * 120.00277 * 120.00028 * 5 3 2 7 7 C 1.37876 * 120.00434 * 299.72691 * 5 3 2 8 8 N 1.31509 * 120.00463 * 180.27069 * 7 5 3 9 9 Si 1.86807 * 119.99634 * 0.27208 * 7 5 3 10 10 H 1.48500 * 109.46936 * 90.00212 * 9 7 5 11 11 H 1.48498 * 109.47252 * 209.99921 * 9 7 5 12 12 H 1.48492 * 109.47069 * 330.00395 * 9 7 5 13 13 N 1.46497 * 109.47396 * 294.99476 * 3 2 1 14 14 C 1.34785 * 119.99859 * 85.00135 * 13 3 2 15 15 O 1.21356 * 119.99785 * 359.97438 * 14 13 3 16 16 C 1.49446 * 119.99972 * 180.02562 * 14 13 3 17 17 O 1.21345 * 120.00077 * 6.76591 * 16 14 13 18 18 N 1.34780 * 119.99645 * 186.76880 * 16 14 13 19 19 C 1.46924 * 120.63206 * 8.65072 * 18 16 14 20 20 C 1.53194 * 108.77845 * 126.36747 * 19 18 16 21 21 C 1.53044 * 109.31160 * 54.62904 * 20 19 18 22 22 C 1.53041 * 109.53867 * 298.63742 * 21 20 19 23 23 H 1.08995 * 109.49465 * 301.41281 * 22 21 20 24 24 C 1.52996 * 109.49383 * 181.31729 * 22 21 20 25 25 C 1.46924 * 120.62720 * 188.36323 * 18 16 14 26 26 H 1.09000 * 109.46947 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47321 * 300.00248 * 1 2 3 28 28 H 1.09006 * 109.47020 * 60.00380 * 1 2 3 29 29 H 1.08995 * 109.47321 * 239.99752 * 2 1 3 30 30 H 1.08998 * 109.46699 * 119.99578 * 2 1 3 31 31 H 0.96999 * 119.99889 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00298 * 265.00065 * 13 3 2 33 33 H 1.09002 * 109.58126 * 246.15478 * 19 18 16 34 34 H 1.08993 * 109.58648 * 6.57702 * 19 18 16 35 35 H 1.08994 * 109.49752 * 174.58139 * 20 19 18 36 36 H 1.09001 * 109.49035 * 294.65046 * 20 19 18 37 37 H 1.08997 * 109.45795 * 58.65972 * 21 20 19 38 38 H 1.08999 * 109.45607 * 178.61336 * 21 20 19 39 39 H 1.09001 * 109.47288 * 60.00043 * 24 22 21 40 40 H 1.09002 * 109.47022 * 179.97438 * 24 22 21 41 41 H 1.08998 * 109.47515 * 299.99863 * 24 22 21 42 42 H 1.08999 * 109.58921 * 353.42077 * 25 18 16 43 43 H 1.09002 * 109.58827 * 113.84502 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8419 5 6 3.5418 1.4444 0.1240 6 1 4.1472 1.8889 -0.6521 7 6 4.1430 0.8836 1.2308 8 7 5.4534 0.8899 1.3415 9 14 3.0959 0.1146 2.5732 10 1 2.8803 -1.3231 2.2702 11 1 3.7904 0.2464 3.8792 12 1 1.7850 0.8090 2.6373 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3402 2.6318 -0.4340 16 6 0.0396 3.3321 -2.6442 17 8 0.7620 3.2583 -3.6164 18 7 -1.1195 4.0161 -2.7162 19 6 -1.9118 4.2758 -1.5065 20 6 -2.1827 5.7804 -1.4079 21 6 -2.8380 6.2627 -2.7041 22 6 -1.8884 6.0188 -3.8792 23 1 -0.9507 6.5463 -3.7047 24 6 -2.5309 6.5311 -5.1697 25 6 -1.6115 4.5217 -4.0050 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8762 0.4957 2.1204 32 1 2.2720 2.1232 -1.9977 33 1 -2.8577 3.7374 -1.5667 34 1 -1.3567 3.9461 -0.6283 35 1 -2.8498 5.9757 -0.5684 36 1 -1.2422 6.3100 -1.2562 37 1 -3.7660 5.7149 -2.8674 38 1 -3.0542 7.3282 -2.6270 39 1 -2.7284 7.5992 -5.0781 40 1 -1.8541 6.3576 -6.0064 41 1 -3.4678 6.0021 -5.3441 42 1 -0.8582 4.3543 -4.7748 43 1 -2.5323 4.0039 -4.2732 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330431092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:18 Heat of formation + Delta-G solvation = -68.124190 kcal Electronic energy + Delta-G solvation = -23353.166043 eV Core-core repulsion = 20012.544747 eV Total energy + Delta-G solvation = -3340.621296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70463 -38.79909 -37.56181 -35.69107 -33.74749 -32.41339 -31.95260 -31.55250 -27.85838 -27.21681 -26.01947 -23.56203 -22.50711 -22.38064 -20.65973 -19.89792 -19.56816 -17.65111 -16.78924 -16.34130 -15.93914 -15.54921 -15.14345 -14.99181 -14.55805 -14.16267 -14.12878 -13.68051 -13.45222 -13.17508 -12.99210 -12.76386 -12.41424 -12.29852 -12.06603 -11.91820 -11.81628 -11.36748 -11.21064 -11.17818 -11.01142 -10.89454 -10.70280 -10.60199 -10.51053 -9.99072 -9.56620 -9.31325 -8.87991 -8.75370 -8.66533 -8.22570 -6.24554 -4.28423 1.80013 2.66113 3.20055 3.32156 3.34891 3.59366 3.92441 4.26880 4.50675 4.60857 4.70609 4.90394 4.95659 5.07775 5.18130 5.28416 5.33238 5.43695 5.52554 5.57163 5.64588 5.80004 5.86646 5.88639 5.92417 5.95134 5.98123 6.05122 6.14520 6.23338 6.43770 6.54992 6.63157 6.72378 6.83489 7.09975 7.17663 7.24265 7.39074 7.79034 8.12360 8.39675 8.57341 8.76841 9.33953 10.87339 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030723 B = 0.004213 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.158249 B = 6644.409687 C = 6866.348834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.240 3.760 4 H 0.055 0.945 5 C -0.539 4.539 6 H 0.083 0.917 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.259 1.259 13 N -0.660 5.660 14 C 0.497 3.503 15 O -0.526 6.526 16 C 0.508 3.492 17 O -0.526 6.526 18 N -0.587 5.587 19 C 0.068 3.932 20 C -0.137 4.137 21 C -0.116 4.116 22 C -0.107 4.107 23 H 0.075 0.925 24 C -0.144 4.144 25 C 0.112 3.888 26 H 0.034 0.966 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.268 0.732 32 H 0.408 0.592 33 H 0.064 0.936 34 H 0.147 0.853 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.918 8.239 -7.998 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.137 3.863 4 H 0.072 0.928 5 C -0.577 4.577 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.308 5.308 14 C 0.277 3.723 15 O -0.406 6.406 16 C 0.291 3.709 17 O -0.402 6.402 18 N -0.321 5.321 19 C -0.053 4.053 20 C -0.175 4.175 21 C -0.153 4.153 22 C -0.127 4.127 23 H 0.093 0.907 24 C -0.202 4.202 25 C -0.010 4.010 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.244 0.756 33 H 0.082 0.918 34 H 0.163 0.837 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.861 8.092 -7.733 20.238 hybrid contribution -0.207 -0.418 0.313 0.562 sum -17.068 7.673 -7.420 20.131 Atomic orbital electron populations 1.21889 0.96871 0.99382 1.02088 1.22305 0.94414 0.99597 1.01553 1.19350 0.96164 0.88730 0.82006 0.92765 1.21017 0.88286 1.40398 1.08003 0.89918 1.24821 0.94894 0.95045 0.97607 1.69861 1.08714 1.44250 1.29669 0.86907 0.80926 0.80019 0.80927 1.20135 1.22050 1.18402 1.46137 1.13679 1.52458 1.18538 1.19887 0.83822 0.80967 0.87588 1.90435 1.50579 1.59259 1.40363 1.20543 0.81293 0.79612 0.89433 1.90718 1.50775 1.60331 1.38385 1.47923 1.21738 1.53072 1.09328 1.22906 0.97337 0.95175 0.89871 1.21965 1.01329 0.96483 0.97696 1.21618 0.98249 1.01095 0.94352 1.21424 0.99733 0.95801 0.95712 0.90673 1.21759 1.00692 1.01052 0.96676 1.21652 0.99990 0.93487 0.85889 0.94666 0.92648 0.93202 0.91966 0.92387 0.92164 0.75645 0.91766 0.83660 0.90617 0.91607 0.91844 0.91852 0.92333 0.92354 0.92517 0.88941 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.51 37.16 0.32 -2.46 16 2 C -0.14 -3.03 5.11 -26.73 -0.14 -3.16 16 3 C 0.24 5.55 1.83 -69.09 -0.13 5.42 16 4 H 0.05 1.34 6.63 -51.92 -0.34 0.99 16 5 C -0.54 -14.42 9.31 -34.44 -0.32 -14.74 16 6 H 0.08 2.36 7.98 -52.48 -0.42 1.94 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 9 Si 0.88 21.10 24.41 -169.99 -4.15 16.95 16 10 H -0.27 -6.37 6.84 56.52 0.39 -5.99 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.26 -6.03 6.52 56.52 0.37 -5.66 16 13 N -0.66 -13.46 5.01 -55.36 -0.28 -13.74 16 14 C 0.50 9.33 6.31 -11.58 -0.07 9.26 16 15 O -0.53 -10.10 10.32 5.49 0.06 -10.04 16 16 C 0.51 8.68 7.73 -11.59 -0.09 8.59 16 17 O -0.53 -9.91 15.93 5.50 0.09 -9.82 16 18 N -0.59 -8.19 2.98 -173.54 -0.52 -8.71 16 19 C 0.07 0.86 5.98 -3.71 -0.02 0.83 16 20 C -0.14 -1.39 6.08 -26.61 -0.16 -1.55 16 21 C -0.12 -1.00 5.17 -26.69 -0.14 -1.14 16 22 C -0.11 -1.01 2.86 -90.72 -0.26 -1.27 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 C -0.14 -1.06 9.20 37.16 0.34 -0.72 16 25 C 0.11 1.28 5.70 -3.93 -0.02 1.26 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 1.09 7.85 -51.93 -0.41 0.68 16 28 H 0.05 0.94 5.64 -51.93 -0.29 0.65 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.31 3.24 -51.93 -0.17 1.14 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.41 8.09 8.03 -40.82 -0.33 7.76 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.15 2.18 4.32 -54.76 -0.24 1.94 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 1.16 7.00 -51.93 -0.36 0.79 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -29.25 329.01 -6.67 -35.93 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.82 Total: 7.30 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.79 Total: 2.45 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.02 Total: -47.72 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.14 Total: -19.87 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.15 Total: 16.95 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.25 -6.67 -35.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330431092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.199 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds