Wall clock time and date at job start Tue Mar 31 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47215 * 2 1 4 4 H 1.09006 * 109.46993 * 55.00026 * 3 2 1 5 5 C 1.50697 * 109.47192 * 175.00032 * 3 2 1 6 6 H 1.07994 * 119.99974 * 120.00663 * 5 3 2 7 7 C 1.37873 * 119.99972 * 299.99761 * 5 3 2 8 8 N 1.31515 * 119.99955 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00130 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47212 * 89.99472 * 9 7 5 11 11 H 1.48500 * 109.47366 * 209.99357 * 9 7 5 12 12 H 1.48498 * 109.47204 * 329.99824 * 9 7 5 13 13 N 1.46498 * 109.47096 * 295.00376 * 3 2 1 14 14 C 1.34777 * 120.00083 * 84.99775 * 13 3 2 15 15 O 1.21273 * 120.00239 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99769 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.58668 * 17.10013 * 16 14 13 18 18 C 1.53193 * 109.58807 * 256.66877 * 16 14 13 19 19 C 1.53041 * 109.31069 * 185.58139 * 18 16 14 20 20 C 1.53031 * 109.54061 * 61.36348 * 19 18 16 21 21 C 1.53188 * 109.31459 * 298.63359 * 20 19 18 22 22 N 1.46930 * 108.77801 * 54.63657 * 21 20 19 23 23 C 1.34770 * 120.63334 * 126.36802 * 22 21 20 24 24 C 1.50702 * 120.00100 * 359.91987 * 23 22 21 25 25 O 1.21282 * 120.00008 * 179.97438 * 23 22 21 26 26 H 1.08994 * 109.47777 * 299.99932 * 1 2 3 27 27 H 1.09008 * 109.47029 * 60.00010 * 1 2 3 28 28 H 1.09005 * 109.47445 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47311 * 120.00349 * 2 1 3 30 30 H 1.09005 * 109.47116 * 240.00417 * 2 1 3 31 31 H 0.97001 * 120.00241 * 180.02562 * 8 7 5 32 32 H 0.97007 * 119.99587 * 264.99493 * 13 3 2 33 33 H 1.09002 * 109.49573 * 305.52993 * 18 16 14 34 34 H 1.08997 * 109.49631 * 65.62864 * 18 16 14 35 35 H 1.09000 * 109.45844 * 301.33996 * 19 18 16 36 36 H 1.09004 * 109.44490 * 181.37974 * 19 18 16 37 37 H 1.09001 * 109.50184 * 178.68087 * 20 19 18 38 38 H 1.08999 * 109.49900 * 58.58803 * 20 19 18 39 39 H 1.09002 * 109.58992 * 294.84919 * 21 20 19 40 40 H 1.09008 * 109.59038 * 174.42540 * 21 20 19 41 41 H 1.08998 * 109.47186 * 84.47956 * 24 23 22 42 42 H 1.09006 * 109.47082 * 204.48205 * 24 23 22 43 43 H 1.09001 * 109.47152 * 324.47553 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8785 1.2279 8 7 5.4539 0.8805 1.3362 9 14 3.0963 0.1090 2.5701 10 1 2.8754 -1.3271 2.2633 11 1 3.7936 0.2348 3.8751 12 1 1.7876 0.8074 2.6387 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3668 15 8 -0.3397 2.6319 -0.4344 16 6 0.0365 3.3387 -2.6544 17 1 0.7018 3.0179 -3.4560 18 6 0.1252 4.8589 -2.4869 19 6 -0.4122 5.5392 -3.7480 20 6 -1.8813 5.1602 -3.9475 21 6 -1.9928 3.6435 -4.1316 22 7 -1.3481 2.9799 -2.9902 23 6 -2.0143 2.0600 -2.2648 24 6 -3.4350 1.7045 -2.6204 25 8 -1.4709 1.5189 -1.3252 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 5.8770 0.4821 2.1129 32 1 2.2719 2.1232 -1.9978 33 1 -0.4697 5.1654 -1.6265 34 1 1.1648 5.1478 -2.3325 35 1 0.1675 5.2132 -4.6115 36 1 -0.3274 6.6207 -3.6410 37 1 -2.2700 5.6636 -4.8327 38 1 -2.4574 5.4639 -3.0735 39 1 -1.4933 3.3497 -5.0549 40 1 -3.0436 3.3568 -4.1752 41 1 -3.4347 0.9461 -3.4033 42 1 -3.9440 1.3159 -1.7383 43 1 -3.9539 2.5944 -2.9767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330605370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:56 Heat of formation + Delta-G solvation = -13.587556 kcal Electronic energy + Delta-G solvation = -24329.543036 eV Core-core repulsion = 20991.286626 eV Total energy + Delta-G solvation = -3338.256410 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.72552 -38.07705 -37.27081 -35.01598 -33.00205 -32.30477 -31.85922 -30.80097 -29.31782 -27.40104 -25.35688 -23.86422 -22.46519 -21.29747 -20.73443 -19.44039 -18.72735 -17.73257 -16.64783 -16.20647 -15.79637 -15.30491 -15.06005 -14.63718 -14.37092 -14.14280 -13.90160 -13.69367 -13.31123 -13.05828 -12.78137 -12.58548 -12.36344 -12.20503 -11.80460 -11.61530 -11.56267 -11.37636 -11.28251 -10.97396 -10.79823 -10.69996 -10.56177 -10.15024 -9.74717 -9.42303 -9.05686 -9.00937 -8.66883 -8.47600 -8.28968 -7.41251 -6.11314 -4.12144 2.79636 2.93552 3.34160 3.43887 3.53311 3.79916 4.04978 4.42866 4.56148 4.67395 4.74347 4.91610 5.02164 5.11845 5.17909 5.23949 5.27583 5.33483 5.43420 5.54965 5.60861 5.70180 5.74951 5.84928 5.91740 5.94963 6.22067 6.28684 6.36073 6.51212 6.60742 6.96862 7.04072 7.19465 7.39355 7.51605 7.55858 7.60071 7.73085 8.31630 8.73479 8.87555 8.96195 9.30016 9.52719 11.00848 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025883 B = 0.005610 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.520997 B = 4990.200413 C = 5763.049376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.135 4.135 3 C 0.249 3.751 4 H 0.045 0.955 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.078 3.922 8 N -0.896 5.896 9 Si 0.885 3.115 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.260 1.260 13 N -0.704 5.704 14 C 0.493 3.507 15 O -0.489 6.489 16 C 0.130 3.870 17 H 0.083 0.917 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.137 4.137 21 C 0.110 3.890 22 N -0.609 5.609 23 C 0.468 3.532 24 C -0.170 4.170 25 O -0.455 6.455 26 H 0.042 0.958 27 H 0.116 0.884 28 H 0.014 0.986 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.266 0.734 32 H 0.389 0.611 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.997 7.270 -14.608 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C 0.146 3.854 4 H 0.062 0.938 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.125 4.125 8 N -0.534 5.534 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.224 1.224 12 H -0.185 1.185 13 N -0.354 5.354 14 C 0.276 3.724 15 O -0.363 6.363 16 C 0.023 3.977 17 H 0.101 0.899 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.175 4.175 21 C -0.013 4.013 22 N -0.346 5.346 23 C 0.259 3.741 24 C -0.229 4.229 25 O -0.330 6.330 26 H 0.061 0.939 27 H 0.132 0.868 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.128 6.868 -13.251 21.974 hybrid contribution -0.048 -0.514 0.268 0.582 sum -16.176 6.354 -12.983 21.693 Atomic orbital electron populations 1.22591 0.95622 0.98466 1.05733 1.22250 0.95456 0.99556 1.00045 1.19025 0.94977 0.88592 0.82850 0.93769 1.21111 0.88940 1.39284 1.07566 0.90361 1.24817 0.94818 0.95189 0.97703 1.69877 1.08674 1.44977 1.29859 0.86878 0.80968 0.80023 0.80670 1.20409 1.22433 1.18489 1.45970 1.14705 1.56930 1.17798 1.19690 0.82607 0.80800 0.89277 1.90697 1.48699 1.56463 1.40446 1.21120 0.83763 0.95714 0.97100 0.89938 1.21804 1.02696 0.92577 0.98965 1.21502 0.95686 1.00426 0.97833 1.21943 0.97529 0.95652 1.02415 1.21738 0.98512 0.92445 0.88559 1.47739 1.13400 1.41457 1.32053 1.21121 0.88589 0.81097 0.83312 1.21961 0.94242 1.02604 1.04103 1.90858 1.67575 1.48499 1.26081 0.93885 0.86759 0.96674 0.93745 0.93077 0.92461 0.77850 0.90684 0.90150 0.91608 0.91385 0.90840 0.91359 0.91575 0.89443 0.89707 0.89384 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 7.95 37.15 0.30 -3.67 16 2 C -0.13 -3.33 5.11 -26.73 -0.14 -3.47 16 3 C 0.25 6.33 1.83 -69.08 -0.13 6.21 16 4 H 0.04 1.25 6.64 -51.93 -0.34 0.91 16 5 C -0.53 -14.99 9.31 -34.44 -0.32 -15.31 16 6 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 7 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 9 Si 0.88 23.23 24.41 -169.99 -4.15 19.08 16 10 H -0.28 -7.13 6.83 56.52 0.39 -6.74 16 11 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 12 H -0.26 -6.90 6.53 56.52 0.37 -6.54 16 13 N -0.70 -14.84 5.02 -54.93 -0.28 -15.11 16 14 C 0.49 9.70 4.64 -10.98 -0.05 9.64 16 15 O -0.49 -11.40 10.97 -20.69 -0.23 -11.63 16 16 C 0.13 1.85 3.29 -68.75 -0.23 1.62 16 17 H 0.08 1.02 8.02 -51.93 -0.42 0.61 16 18 C -0.12 -1.47 5.35 -26.61 -0.14 -1.61 16 19 C -0.12 -0.99 5.88 -26.69 -0.16 -1.15 16 20 C -0.14 -1.02 6.08 -26.62 -0.16 -1.18 16 21 C 0.11 0.89 6.31 -3.71 -0.02 0.86 16 22 N -0.61 -7.69 2.97 -166.52 -0.49 -8.19 16 23 C 0.47 7.00 7.50 -10.99 -0.08 6.92 16 24 C -0.17 -1.70 9.42 36.01 0.34 -1.36 16 25 O -0.46 -9.11 7.81 -20.70 -0.16 -9.27 16 26 H 0.04 1.08 7.85 -51.93 -0.41 0.68 16 27 H 0.12 2.67 2.65 -57.44 -0.15 2.52 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 1.15 3.21 -51.93 -0.17 0.99 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.39 7.25 8.45 -40.82 -0.34 6.91 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.54 5.44 -51.92 -0.28 0.26 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.55 6.27 -51.93 -0.33 0.23 16 LS Contribution 318.11 15.07 4.79 4.79 Total: -1.00 -35.29 318.11 -7.32 -42.62 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.69 Total: 4.70 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.89 Total: -0.32 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.00 Total: -49.98 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.39 Total: -20.90 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.15 Total: 19.08 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.29 -7.32 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330605370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.028 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds