Wall clock time and date at job start Tue Mar 31 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99758 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00201 * 179.97438 * 4 3 2 7 7 C 1.47423 * 125.64940 * 0.03095 * 6 4 3 8 8 C 1.54904 * 104.83077 * 204.09103 * 7 6 4 9 9 C 1.55158 * 101.58211 * 322.98535 * 8 7 6 10 10 C 1.47025 * 125.64701 * 179.71711 * 6 4 3 11 11 H 1.09002 * 109.88194 * 59.56506 * 10 6 4 12 12 C 1.50697 * 109.88472 * 298.39830 * 10 6 4 13 13 O 1.21288 * 119.99988 * 0.02562 * 12 10 6 14 14 N 1.34776 * 120.00325 * 180.02562 * 12 10 6 15 15 C 1.46494 * 120.00080 * 179.97438 * 14 12 10 16 16 H 1.08998 * 109.47895 * 325.00076 * 15 14 12 17 17 C 1.53011 * 109.47092 * 85.00330 * 15 14 12 18 18 C 1.50699 * 109.47185 * 204.99913 * 15 14 12 19 19 H 1.07999 * 119.99877 * 0.02562 * 18 15 14 20 20 C 1.37878 * 119.99973 * 180.02562 * 18 15 14 21 21 N 1.31513 * 120.00325 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 119.99977 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47187 * 59.99516 * 22 20 18 24 24 H 1.48501 * 109.47313 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46837 * 299.99904 * 22 20 18 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.09004 * 110.36521 * 322.92466 * 7 6 4 34 34 H 1.08996 * 110.36830 * 85.13904 * 7 6 4 35 35 H 1.09004 * 111.00710 * 81.06220 * 8 7 6 36 36 H 1.09005 * 111.00466 * 204.91432 * 8 7 6 37 37 H 1.09005 * 110.72083 * 153.86739 * 9 8 7 38 38 H 1.09001 * 110.72394 * 276.96171 * 9 8 7 39 39 H 0.97002 * 119.99704 * 359.97438 * 14 12 10 40 40 H 1.09001 * 109.46283 * 299.99909 * 17 15 14 41 41 H 1.08998 * 109.46958 * 59.99172 * 17 15 14 42 42 H 1.08995 * 109.46936 * 180.02562 * 17 15 14 43 43 H 0.96998 * 120.00469 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.6131 3.9527 -0.0002 8 6 4.6950 4.8774 -0.6118 9 6 5.9950 4.2656 -0.0260 10 6 5.6840 2.7543 0.0067 11 1 6.1082 2.2713 -0.8737 12 6 6.2546 2.1378 1.2578 13 8 5.5165 1.6240 2.0717 14 7 7.5850 2.1574 1.4726 15 6 8.1395 1.5586 2.6891 16 1 7.4490 1.7142 3.5181 17 6 8.3448 0.0581 2.4711 18 6 9.4624 2.2053 3.0093 19 1 9.8511 2.9847 2.3707 20 6 10.1766 1.8020 4.1176 21 7 9.7032 0.8532 4.8956 22 14 11.8163 2.6041 4.5149 23 1 11.6164 4.0602 4.7273 24 1 12.3784 1.9971 5.7481 25 1 12.7571 2.3932 3.3855 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 2.7139 3.9620 -0.6162 34 1 3.3779 4.2630 1.0179 35 1 4.6907 4.8171 -1.7001 36 1 4.5630 5.9068 -0.2785 37 1 6.8455 4.4727 -0.6756 38 1 6.1793 4.6423 0.9801 39 1 8.1753 2.5680 0.8215 40 1 7.3879 -0.4096 2.2395 41 1 9.0353 -0.0974 1.6422 42 1 8.7570 -0.3874 3.3765 43 1 10.2054 0.5697 5.6754 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330645126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:35 Heat of formation + Delta-G solvation = -86.060848 kcal Electronic energy + Delta-G solvation = -23045.130515 eV Core-core repulsion = 19703.731427 eV Total energy + Delta-G solvation = -3341.399088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.34300 -38.36289 -37.01757 -34.66584 -34.30456 -32.43621 -31.59146 -30.04463 -28.36841 -27.61360 -25.19589 -24.01481 -22.12717 -21.73007 -20.74383 -19.52865 -18.83431 -17.41091 -16.95947 -16.31082 -15.63942 -15.37313 -15.11705 -14.60140 -14.29318 -13.99970 -13.73439 -13.33456 -13.24032 -13.07950 -12.78930 -12.39963 -12.29599 -11.93832 -11.72538 -11.65181 -11.49311 -11.46120 -11.14279 -11.05660 -10.97970 -10.87645 -10.75155 -10.62007 -10.27581 -10.17435 -9.55142 -9.17813 -8.98993 -8.51911 -8.30336 -7.80816 -6.07623 -4.17321 2.85410 3.09777 3.27224 3.32397 3.33536 3.47478 4.16287 4.37809 4.44506 4.47328 4.76617 4.84612 4.89379 4.98149 5.19668 5.23860 5.28603 5.31217 5.43212 5.45679 5.54972 5.62690 5.65393 5.71674 5.76762 5.82254 5.95013 6.08960 6.13064 6.28531 6.38081 6.92329 7.09975 7.24836 7.55480 7.63281 7.67713 7.75944 7.98768 8.21621 8.45125 8.74663 8.84431 9.23149 9.50450 10.98193 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.004166 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.632303 B = 6719.408226 C = 7595.279018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.131 4.131 4 C 0.532 3.468 5 O -0.521 6.521 6 N -0.605 5.605 7 C 0.100 3.900 8 C -0.130 4.130 9 C -0.123 4.123 10 C 0.116 3.884 11 H 0.093 0.907 12 C 0.496 3.504 13 O -0.537 6.537 14 N -0.709 5.709 15 C 0.268 3.732 16 H 0.046 0.954 17 C -0.146 4.146 18 C -0.533 4.533 19 H 0.060 0.940 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.386 0.614 40 H 0.016 0.984 41 H 0.025 0.975 42 H 0.088 0.912 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.947 8.002 -13.011 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.171 4.171 4 C 0.321 3.679 5 O -0.396 6.396 6 N -0.341 5.341 7 C -0.023 4.023 8 C -0.168 4.168 9 C -0.162 4.162 10 C 0.008 3.992 11 H 0.111 0.889 12 C 0.279 3.721 13 O -0.414 6.414 14 N -0.358 5.358 15 C 0.166 3.834 16 H 0.064 0.936 17 C -0.205 4.205 18 C -0.572 4.572 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.729 3.271 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.218 0.782 40 H 0.035 0.965 41 H 0.044 0.956 42 H 0.107 0.893 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.155 6.828 -12.212 19.903 hybrid contribution 1.287 0.662 0.016 1.448 sum -12.868 7.490 -12.197 19.247 Atomic orbital electron populations 1.21783 0.95648 1.01821 1.01550 1.21291 0.94982 0.94857 1.03776 1.21650 0.91677 0.99996 1.03777 1.20294 0.89799 0.82139 0.75674 1.90732 1.70210 1.30391 1.48254 1.48215 1.05399 1.05926 1.74516 1.22322 0.96663 0.82174 1.01139 1.22771 0.94172 0.99119 1.00783 1.22644 0.98519 0.91803 1.03213 1.21550 0.82424 0.97133 0.98090 0.88904 1.20514 0.83516 0.80483 0.87600 1.90653 1.59070 1.45198 1.46449 1.46448 1.05599 1.58651 1.25102 1.18687 0.93428 0.89849 0.81444 0.93632 1.22062 0.97688 0.98810 1.01949 1.21189 1.04307 1.20828 1.10868 0.92161 1.24898 0.98094 0.94940 0.95807 1.69905 1.38522 1.28357 1.15273 0.86516 0.83359 0.79460 0.77772 1.20215 1.21156 1.20170 0.92905 0.92707 0.92484 0.90945 0.91358 0.89462 0.89120 0.90475 0.91229 0.90393 0.89538 0.89166 0.89654 0.78169 0.96530 0.95594 0.89306 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.11 -1.33 5.22 -26.74 -0.14 -1.47 16 3 C -0.13 -1.53 4.71 -27.89 -0.13 -1.66 16 4 C 0.53 8.86 7.01 -10.99 -0.08 8.78 16 5 O -0.52 -11.23 15.28 -8.14 -0.12 -11.35 16 6 N -0.61 -8.96 2.84 -164.32 -0.47 -9.43 16 7 C 0.10 1.00 6.69 -2.53 -0.02 0.98 16 8 C -0.13 -1.07 7.09 -24.58 -0.17 -1.24 16 9 C -0.12 -1.38 6.41 -24.89 -0.16 -1.54 16 10 C 0.12 1.81 3.26 -68.10 -0.22 1.59 16 11 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 12 C 0.50 10.63 6.63 -10.99 -0.07 10.55 16 13 O -0.54 -13.96 14.73 -8.14 -0.12 -14.08 16 14 N -0.71 -15.50 5.01 -54.93 -0.27 -15.77 16 15 C 0.27 7.14 2.56 -69.08 -0.18 6.96 16 16 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 17 C -0.15 -3.93 9.26 37.16 0.34 -3.59 16 18 C -0.53 -14.45 8.73 -34.44 -0.30 -14.75 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 21 N -0.88 -25.57 11.32 55.43 0.63 -24.95 16 22 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 30 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.09 0.76 7.85 -51.93 -0.41 0.35 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.56 7.48 -51.93 -0.39 0.17 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.08 7.84 -51.93 -0.41 0.68 16 39 H 0.39 7.20 8.53 -40.82 -0.35 6.85 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -35.67 349.96 -8.25 -43.93 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.29 Total: 5.12 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.85 Total: 5.38 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.11 Total: -50.15 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.24 Total: -25.43 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.67 -8.25 -43.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330645126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.136 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds