Wall clock time and date at job start Tue Mar 31 2020 06:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47186 * 2 1 4 4 N 1.46499 * 109.46696 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99869 * 269.99338 * 4 3 2 6 6 H 1.07997 * 119.99760 * 138.45874 * 5 4 3 7 7 C 1.38944 * 120.00502 * 318.46343 * 5 4 3 8 8 N 1.31417 * 119.99532 * 352.10521 * 7 5 4 9 9 Si 1.86796 * 120.00361 * 172.10730 * 7 5 4 10 10 H 1.48503 * 109.47237 * 89.99928 * 9 7 5 11 11 H 1.48503 * 109.47104 * 209.99978 * 9 7 5 12 12 H 1.48494 * 109.47244 * 329.99941 * 9 7 5 13 13 C 1.34773 * 120.00289 * 90.00362 * 4 3 2 14 14 O 1.21290 * 119.99878 * 4.25465 * 13 4 3 15 15 C 1.50703 * 120.00025 * 184.26275 * 13 4 3 16 16 H 1.08995 * 109.67691 * 27.33084 * 15 13 4 17 17 C 1.53069 * 109.67538 * 147.83173 * 15 13 4 18 18 C 1.50180 * 109.89408 * 70.86522 * 17 15 13 19 19 O 1.21274 * 118.24985 * 197.58381 * 18 17 15 20 20 N 1.33352 * 123.50613 * 17.86381 * 18 17 15 21 21 C 1.45780 * 124.08967 * 357.20662 * 20 18 17 22 22 H 1.08996 * 109.50698 * 259.16870 * 21 20 18 23 23 C 1.52998 * 108.98738 * 139.65436 * 21 20 18 24 24 C 1.52995 * 109.47527 * 64.23447 * 23 21 20 25 25 C 1.52919 * 110.42222 * 19.57830 * 21 20 18 26 26 H 1.08997 * 109.47236 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46691 * 300.00035 * 1 2 3 28 28 H 1.08998 * 109.46749 * 59.99746 * 1 2 3 29 29 H 1.08999 * 109.46691 * 239.99965 * 2 1 3 30 30 H 1.08999 * 109.47267 * 120.00284 * 2 1 3 31 31 H 1.08999 * 109.47334 * 60.00359 * 3 2 1 32 32 H 1.09004 * 109.47148 * 299.99556 * 3 2 1 33 33 H 0.97002 * 119.99987 * 185.00243 * 8 7 5 34 34 H 1.09002 * 109.39792 * 310.73956 * 17 15 13 35 35 H 1.09001 * 109.40321 * 190.99330 * 17 15 13 36 36 H 0.96996 * 117.95034 * 177.47221 * 20 18 17 37 37 H 1.08998 * 109.46925 * 184.23622 * 23 21 20 38 38 H 1.08999 * 109.47337 * 304.22941 * 23 21 20 39 39 H 1.09006 * 109.47339 * 179.97438 * 24 23 21 40 40 H 1.09000 * 109.46968 * 299.99516 * 24 23 21 41 41 H 1.09002 * 109.47322 * 60.00181 * 24 23 21 42 42 H 1.08998 * 109.60075 * 189.27586 * 25 21 20 43 43 H 1.08997 * 109.60358 * 68.78437 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.4423 1.1865 6 1 5.0673 0.8219 1.3037 7 6 3.7589 2.2401 2.2387 8 7 2.7906 3.1083 2.0503 9 14 4.5544 2.0788 3.9211 10 1 5.7072 3.0103 4.0150 11 1 3.5607 2.4134 4.9727 12 1 5.0279 0.6845 4.1132 13 6 4.1785 1.4426 -1.1680 14 8 3.5741 1.5208 -2.2167 15 6 5.6824 1.3454 -1.1704 16 1 6.0175 0.8178 -0.2775 17 6 6.1482 0.5926 -2.4191 18 6 5.9369 1.4443 -3.6379 19 8 5.9418 0.9040 -4.7236 20 7 5.7495 2.7637 -3.5905 21 6 5.6680 3.5335 -2.3552 22 1 4.6234 3.7447 -2.1263 23 6 6.4217 4.8521 -2.5396 24 6 5.7258 5.6917 -3.6127 25 6 6.2913 2.7525 -1.1976 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8901 33 1 2.5379 3.7155 2.7634 34 1 5.5774 -0.3306 -2.5192 35 1 7.2074 0.3535 -2.3237 36 1 5.6582 3.2404 -4.4302 37 1 6.4301 5.4006 -1.5978 38 1 7.4464 4.6448 -2.8483 39 1 6.2626 6.6313 -3.7437 40 1 5.7176 5.1432 -4.5545 41 1 4.7012 5.8991 -3.3039 42 1 6.0790 3.2610 -0.2572 43 1 7.3692 2.6818 -1.3427 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330871514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:44 Heat of formation + Delta-G solvation = -91.505076 kcal Electronic energy + Delta-G solvation = -24102.603634 eV Core-core repulsion = 20760.968467 eV Total energy + Delta-G solvation = -3341.635167 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.31715 -38.27752 -36.47967 -35.13370 -33.41118 -32.65250 -31.64668 -31.12587 -28.64698 -26.24050 -25.09046 -24.11065 -22.48566 -21.35019 -20.62555 -19.66218 -18.61957 -16.94438 -16.28401 -16.02563 -15.66304 -14.83994 -14.77032 -14.40645 -14.24257 -13.85677 -13.70970 -13.43032 -13.15784 -12.99740 -12.94226 -12.31706 -12.01129 -11.73073 -11.63276 -11.35691 -11.33927 -11.25770 -11.11491 -10.96159 -10.83116 -10.73908 -10.54038 -10.39609 -10.33225 -10.22560 -9.74255 -9.18896 -9.10450 -8.50005 -8.38441 -7.46874 -6.37272 -4.21035 3.04449 3.15076 3.16489 3.28689 3.78176 3.89885 4.03828 4.63672 4.88653 4.93518 5.03676 5.11265 5.31175 5.35271 5.51685 5.63187 5.76588 5.80594 5.82518 5.87906 5.93679 5.99643 6.06136 6.10953 6.21584 6.28971 6.31983 6.42098 6.49662 6.53353 6.56163 6.62981 6.71851 6.83642 7.14719 7.29116 7.32107 7.57718 7.93817 7.96811 8.33202 8.81394 9.01322 9.46342 9.89751 10.60835 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.006883 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.475141 B = 4066.866302 C = 4861.906730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.106 3.894 4 N -0.437 5.437 5 C -0.335 4.335 6 H 0.087 0.913 7 C 0.045 3.955 8 N -0.868 5.868 9 Si 0.915 3.085 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.477 3.523 14 O -0.593 6.593 15 C -0.100 4.100 16 H 0.102 0.898 17 C -0.118 4.118 18 C 0.544 3.456 19 O -0.582 6.582 20 N -0.701 5.701 21 C 0.142 3.858 22 H 0.082 0.918 23 C -0.134 4.134 24 C -0.154 4.154 25 C -0.110 4.110 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.050 0.950 33 H 0.270 0.730 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.390 0.610 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.213 2.198 -1.115 5.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.017 4.017 4 N -0.155 5.155 5 C -0.464 4.464 6 H 0.105 0.895 7 C -0.160 4.160 8 N -0.506 5.506 9 Si 0.742 3.258 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.264 3.736 14 O -0.478 6.478 15 C -0.121 4.121 16 H 0.120 0.880 17 C -0.158 4.158 18 C 0.333 3.667 19 O -0.463 6.463 20 N -0.352 5.352 21 C 0.037 3.963 22 H 0.100 0.900 23 C -0.172 4.172 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.225 0.775 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.753 1.944 -1.785 5.436 hybrid contribution 0.228 0.197 0.857 0.908 sum 4.980 2.142 -0.928 5.500 Atomic orbital electron populations 1.21646 0.96672 1.00333 1.01358 1.21824 0.94670 0.99673 1.00953 1.21625 0.81573 0.94429 1.04078 1.43407 1.04726 1.63055 1.04282 1.19409 1.12059 1.25267 0.89623 0.89534 1.25427 0.96075 0.94593 0.99867 1.69660 1.27868 1.18997 1.34034 0.86111 0.78908 0.78917 0.81910 1.20171 1.20792 1.19398 1.20249 0.88631 0.80320 0.84357 1.90580 1.69973 1.55410 1.31879 1.21239 0.95285 0.97120 0.98493 0.87973 1.21492 1.02694 0.99258 0.92331 1.19791 0.74016 0.82302 0.90616 1.90659 1.53673 1.71482 1.30474 1.45359 1.72940 1.07557 1.09311 1.20996 1.00666 0.90313 0.84325 0.90020 1.21920 0.99458 0.95693 1.00160 1.21786 1.01106 0.99476 0.98753 1.21716 0.99126 0.94969 0.99037 0.93754 0.92941 0.93252 0.93453 0.92389 0.86535 0.93135 0.91939 0.88641 0.88748 0.77481 0.90444 0.91639 0.92668 0.92942 0.92255 0.88637 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.13 -2.70 6.26 -26.73 -0.17 -2.87 16 3 C 0.11 2.47 5.02 -4.04 -0.02 2.45 16 4 N -0.44 -10.25 2.52 -114.81 -0.29 -10.54 16 5 C -0.34 -7.76 8.60 -14.93 -0.13 -7.89 16 6 H 0.09 1.90 6.41 -52.49 -0.34 1.56 16 7 C 0.05 1.06 5.23 -17.47 -0.09 0.97 16 8 N -0.87 -21.37 10.96 55.50 0.61 -20.76 16 9 Si 0.92 18.14 29.56 -169.99 -5.03 13.11 16 10 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 13 C 0.48 10.71 5.67 -10.99 -0.06 10.65 16 14 O -0.59 -14.85 13.59 5.55 0.08 -14.78 16 15 C -0.10 -1.82 2.49 -91.56 -0.23 -2.05 16 16 H 0.10 1.78 6.24 -51.93 -0.32 1.45 16 17 C -0.12 -2.06 5.31 -28.10 -0.15 -2.20 16 18 C 0.54 10.70 6.39 -11.87 -0.08 10.62 16 19 O -0.58 -13.27 17.78 5.56 0.10 -13.17 16 20 N -0.70 -12.10 4.80 -54.84 -0.26 -12.37 16 21 C 0.14 2.29 2.32 -68.36 -0.16 2.13 16 22 H 0.08 1.60 7.03 -51.93 -0.37 1.23 16 23 C -0.13 -1.67 5.57 -26.73 -0.15 -1.82 16 24 C -0.15 -1.78 9.75 37.15 0.36 -1.42 16 25 C -0.11 -1.75 4.93 -26.59 -0.13 -1.88 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.12 2.88 5.28 -51.93 -0.27 2.61 16 32 H 0.05 1.24 7.37 -51.93 -0.38 0.86 16 33 H 0.27 6.34 8.32 -40.82 -0.34 6.00 16 34 H 0.10 1.77 8.10 -51.93 -0.42 1.35 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.39 6.29 6.96 -40.82 -0.28 6.01 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.60 6.62 -51.93 -0.34 0.25 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -29.11 337.97 -7.27 -36.38 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -6.94 Total: 12.41 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -0.63 Total: 4.63 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.06 Total: -43.67 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: 0.17 Total: -27.95 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.11 -7.27 -36.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330871514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.124 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds