Wall clock time and date at job start Tue Mar 31 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46984 * 2 1 4 4 N 1.46500 * 109.47304 * 180.02562 * 3 2 1 5 5 C 1.37102 * 119.99860 * 91.54186 * 4 3 2 6 6 H 1.08000 * 120.00176 * 222.10660 * 5 4 3 7 7 C 1.38947 * 119.99907 * 42.11263 * 5 4 3 8 8 N 1.31407 * 120.00295 * 17.59829 * 7 5 4 9 9 Si 1.86805 * 119.99900 * 197.87486 * 7 5 4 10 10 H 1.48497 * 109.47145 * 179.71959 * 9 7 5 11 11 H 1.48500 * 109.47218 * 299.72644 * 9 7 5 12 12 H 1.48500 * 109.47010 * 59.72304 * 9 7 5 13 13 C 1.34783 * 120.00138 * 271.54886 * 4 3 2 14 14 O 1.21288 * 119.99709 * 3.78330 * 13 4 3 15 15 C 1.50700 * 120.00032 * 183.78693 * 13 4 3 16 16 H 1.09005 * 109.66892 * 322.34988 * 15 13 4 17 17 C 1.53066 * 109.67367 * 201.84780 * 15 13 4 18 18 C 1.50173 * 109.89374 * 289.16996 * 17 15 13 19 19 O 1.21281 * 118.24744 * 162.39469 * 18 17 15 20 20 N 1.33357 * 123.50795 * 342.41365 * 18 17 15 21 21 C 1.45758 * 124.10262 * 2.24981 * 20 18 17 22 22 H 1.09000 * 109.30171 * 101.21821 * 21 20 18 23 23 C 1.53002 * 109.29668 * 220.79242 * 21 20 18 24 24 C 1.52999 * 109.47679 * 295.00281 * 23 21 20 25 25 C 1.52996 * 110.50417 * 340.89130 * 21 20 18 26 26 H 1.08997 * 109.46906 * 299.99346 * 1 2 3 27 27 H 1.09000 * 109.47175 * 60.00246 * 1 2 3 28 28 H 1.09004 * 109.46794 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46722 * 240.00242 * 2 1 3 30 30 H 1.09000 * 109.47196 * 120.00541 * 2 1 3 31 31 H 1.08999 * 109.47241 * 60.00359 * 3 2 1 32 32 H 1.09000 * 109.47595 * 300.00297 * 3 2 1 33 33 H 0.97005 * 120.00476 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.39683 * 49.29915 * 17 15 13 35 35 H 1.08998 * 109.39735 * 169.12084 * 17 15 13 36 36 H 0.96998 * 117.95098 * 182.22321 * 20 18 17 37 37 H 1.08999 * 109.47074 * 55.00651 * 23 21 20 38 38 H 1.09002 * 109.47097 * 174.99845 * 23 21 20 39 39 H 1.09002 * 109.47212 * 59.99635 * 24 23 21 40 40 H 1.08992 * 109.47302 * 180.02562 * 24 23 21 41 41 H 1.09001 * 109.46676 * 300.00147 * 24 23 21 42 42 H 1.09003 * 109.60965 * 291.02729 * 25 21 20 43 43 H 1.09004 * 109.65087 * 170.50588 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1900 1.4747 -1.1878 6 1 5.0609 0.8511 -1.3259 7 6 3.7638 2.3097 -2.2134 8 7 2.9442 3.3035 -1.9539 9 14 4.3498 2.0147 -3.9625 10 1 3.7502 3.0315 -4.8635 11 1 5.8302 2.1198 -4.0129 12 1 3.9346 0.6582 -4.4014 13 6 4.1794 1.4109 1.1659 14 8 3.5754 1.3130 2.2131 15 6 5.6840 1.4971 1.1690 16 1 6.0850 0.9421 0.3208 17 6 6.2310 0.9115 2.4732 18 6 5.9111 1.8283 3.6187 19 8 5.9753 1.3834 4.7452 20 7 5.5598 3.1054 3.4637 21 6 5.3967 3.7569 2.1700 22 1 4.3355 3.8197 1.9295 23 6 5.9844 5.1679 2.2368 24 6 5.1737 6.0120 3.2224 25 6 6.1171 2.9652 1.0768 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 2.6463 3.8862 -2.6699 34 1 5.7762 -0.0629 2.6513 35 1 7.3120 0.7973 2.3933 36 1 5.4025 3.6338 4.2617 37 1 7.0206 5.1146 2.5708 38 1 5.9445 5.6253 1.2482 39 1 5.2136 5.5546 4.2110 40 1 5.5921 7.0173 3.2696 41 1 4.1375 6.0653 2.8884 42 1 7.1949 3.0382 1.2221 43 1 5.8498 3.3646 0.0984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330871516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:51 Heat of formation + Delta-G solvation = -94.140096 kcal Electronic energy + Delta-G solvation = -24175.181720 eV Core-core repulsion = 20833.432290 eV Total energy + Delta-G solvation = -3341.749431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.28729 -38.27429 -36.43862 -35.14556 -33.39914 -32.67363 -31.63371 -31.14771 -28.58113 -26.23948 -25.09365 -24.08248 -22.46477 -21.33186 -20.66855 -19.69243 -18.55017 -16.92350 -16.27597 -15.95501 -15.64586 -14.87772 -14.76102 -14.38683 -14.24383 -13.87819 -13.68225 -13.41077 -13.11889 -12.99448 -12.93329 -12.31591 -11.99700 -11.69491 -11.67814 -11.40446 -11.31293 -11.18109 -11.07322 -10.99327 -10.79483 -10.74546 -10.52416 -10.39627 -10.37639 -10.22767 -9.75463 -9.14463 -9.11561 -8.49737 -8.38990 -7.49787 -6.44150 -4.20512 3.05632 3.14835 3.16765 3.30789 3.79814 3.92329 4.03677 4.63037 4.86827 4.97475 5.07729 5.14307 5.35004 5.37306 5.56300 5.66333 5.76842 5.79420 5.83927 5.87622 5.97848 6.01481 6.08329 6.13752 6.26239 6.32505 6.34331 6.44653 6.48700 6.52520 6.62887 6.65174 6.67497 6.79479 7.08300 7.29816 7.33122 7.40515 7.92581 7.95108 8.29515 8.82819 9.01199 9.45726 9.90248 10.57148 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.007030 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.162775 B = 3981.756864 C = 4718.006339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.120 3.880 4 N -0.435 5.435 5 C -0.342 4.342 6 H 0.086 0.914 7 C 0.050 3.950 8 N -0.858 5.858 9 Si 0.909 3.091 10 H -0.284 1.284 11 H -0.272 1.272 12 H -0.273 1.273 13 C 0.476 3.524 14 O -0.595 6.595 15 C -0.096 4.096 16 H 0.100 0.900 17 C -0.117 4.117 18 C 0.545 3.455 19 O -0.581 6.581 20 N -0.705 5.705 21 C 0.142 3.858 22 H 0.080 0.920 23 C -0.133 4.133 24 C -0.154 4.154 25 C -0.109 4.109 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.270 0.730 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.389 0.611 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 2.518 0.494 4.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.003 4.003 4 N -0.153 5.153 5 C -0.470 4.470 6 H 0.103 0.897 7 C -0.157 4.157 8 N -0.493 5.493 9 Si 0.736 3.264 10 H -0.209 1.209 11 H -0.197 1.197 12 H -0.198 1.198 13 C 0.264 3.736 14 O -0.480 6.480 15 C -0.118 4.118 16 H 0.118 0.882 17 C -0.157 4.157 18 C 0.333 3.667 19 O -0.462 6.462 20 N -0.355 5.355 21 C 0.037 3.963 22 H 0.098 0.902 23 C -0.171 4.171 24 C -0.211 4.211 25 C -0.147 4.147 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.225 0.775 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.705 2.279 1.231 4.520 hybrid contribution 0.078 0.155 -0.960 0.976 sum 3.783 2.434 0.271 4.506 Atomic orbital electron populations 1.21660 0.96694 1.00436 1.01299 1.21835 0.94619 0.99540 1.01304 1.21325 0.81860 0.94348 1.02785 1.43362 1.04423 1.63173 1.04362 1.19274 1.13705 1.23359 0.90682 0.89682 1.25381 0.96682 0.93525 1.00105 1.69901 1.32545 1.13564 1.33334 0.86289 0.79210 0.78383 0.82551 1.20948 1.19670 1.19844 1.20292 0.88889 0.80347 0.84026 1.90582 1.70106 1.55457 1.31873 1.21185 0.95398 0.97555 0.97649 0.88178 1.21486 1.01823 0.99600 0.92813 1.19823 0.74530 0.82074 0.90283 1.90658 1.55267 1.74374 1.25903 1.45416 1.69658 1.11376 1.09100 1.20997 1.00829 0.91369 0.83087 0.90198 1.21904 0.99585 0.94852 1.00771 1.21785 1.00758 0.99412 0.99145 1.21738 0.99169 0.93847 0.99990 0.93201 0.93057 0.93662 0.92343 0.92917 0.93108 0.88487 0.91985 0.88503 0.88885 0.77513 0.91703 0.90312 0.93022 0.92689 0.92243 0.91461 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.13 -2.70 6.25 -26.73 -0.17 -2.86 16 3 C 0.12 2.74 4.93 -4.04 -0.02 2.72 16 4 N -0.44 -10.09 2.49 -114.81 -0.29 -10.37 16 5 C -0.34 -7.84 8.10 -14.93 -0.12 -7.96 16 6 H 0.09 1.87 6.73 -52.49 -0.35 1.52 16 7 C 0.05 1.15 5.00 -17.47 -0.09 1.06 16 8 N -0.86 -20.74 11.58 55.50 0.64 -20.10 16 9 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 10 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 12 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 13 C 0.48 10.70 5.39 -10.98 -0.06 10.64 16 14 O -0.59 -14.95 14.34 5.55 0.08 -14.87 16 15 C -0.10 -1.78 2.37 -91.56 -0.22 -1.99 16 16 H 0.10 1.75 6.59 -51.93 -0.34 1.41 16 17 C -0.12 -2.07 5.20 -28.10 -0.15 -2.22 16 18 C 0.54 10.82 6.39 -11.87 -0.08 10.74 16 19 O -0.58 -13.36 17.78 5.56 0.10 -13.26 16 20 N -0.70 -12.34 4.94 -54.81 -0.27 -12.61 16 21 C 0.14 2.35 2.39 -68.33 -0.16 2.18 16 22 H 0.08 1.60 7.30 -51.93 -0.38 1.22 16 23 C -0.13 -1.73 5.56 -26.73 -0.15 -1.88 16 24 C -0.15 -1.84 9.76 37.16 0.36 -1.48 16 25 C -0.11 -1.79 4.88 -26.55 -0.13 -1.92 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 1.22 7.53 -51.93 -0.39 0.83 16 32 H 0.10 2.33 5.74 -51.93 -0.30 2.03 16 33 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 34 H 0.10 1.82 8.09 -51.93 -0.42 1.40 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.39 6.37 7.04 -40.82 -0.29 6.09 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.60 6.67 -51.93 -0.35 0.26 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 43 H 0.10 1.80 7.83 -51.93 -0.41 1.39 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -28.70 339.55 -7.26 -35.96 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -7.01 Total: 12.13 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -0.60 Total: 5.00 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.09 Total: -43.08 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: 0.18 Total: -28.13 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.70 -7.26 -35.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330871516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.178 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds