Wall clock time and date at job start Tue Mar 31 2020 05:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47025 * 2 1 4 4 C 1.50701 * 109.47015 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00380 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99784 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99805 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.47329 * 180.02562 * 7 6 4 9 9 H 1.09004 * 109.51526 * 304.92005 * 8 7 6 10 10 C 1.53035 * 109.49960 * 184.83859 * 8 7 6 11 11 C 1.53039 * 109.53882 * 178.67656 * 10 8 7 12 12 C 1.53199 * 109.30945 * 61.36676 * 11 10 8 13 13 N 1.46959 * 108.88867 * 305.44381 * 12 11 10 14 14 C 1.34776 * 120.65092 * 233.53217 * 13 12 11 15 15 O 1.21689 * 119.99547 * 174.58123 * 14 13 12 16 16 C 1.46366 * 120.00254 * 354.57834 * 14 13 12 17 17 H 1.08005 * 120.00229 * 5.01015 * 16 14 13 18 18 C 1.40044 * 120.00109 * 185.00638 * 16 14 13 19 19 N 1.30678 * 120.00030 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 120.00127 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47349 * 90.00332 * 20 18 16 22 22 H 1.48500 * 109.47029 * 210.00317 * 20 18 16 23 23 H 1.48497 * 109.47107 * 329.99826 * 20 18 16 24 24 C 1.46928 * 118.71742 * 53.35117 * 13 12 11 25 25 H 1.08995 * 109.46852 * 59.99983 * 1 2 3 26 26 H 1.09002 * 109.46665 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47289 * 299.99909 * 1 2 3 28 28 H 1.09002 * 109.47086 * 239.99836 * 2 1 3 29 29 H 1.08999 * 109.47342 * 120.00071 * 2 1 3 30 30 H 1.09002 * 109.47322 * 59.99980 * 3 2 1 31 31 H 1.09005 * 109.47433 * 299.99571 * 3 2 1 32 32 H 0.96995 * 120.00456 * 0.02562 * 6 4 3 33 33 H 1.09002 * 109.46988 * 60.00246 * 7 6 4 34 34 H 1.08999 * 109.47428 * 300.00487 * 7 6 4 35 35 H 1.08996 * 109.46376 * 298.70245 * 10 8 7 36 36 H 1.09003 * 109.45770 * 58.67449 * 10 8 7 37 37 H 1.08994 * 109.49950 * 181.31259 * 11 10 8 38 38 H 1.08998 * 109.50166 * 301.42154 * 11 10 8 39 39 H 1.09002 * 109.58173 * 65.15038 * 12 11 10 40 40 H 1.08996 * 109.58803 * 185.43166 * 12 11 10 41 41 H 0.97001 * 119.99945 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.59031 * 186.78132 * 24 13 12 43 43 H 1.09005 * 109.58383 * 66.50088 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1535 0.3922 0.0015 6 7 4.2209 2.6097 0.0002 7 6 5.6859 2.6097 0.0014 8 6 6.1959 4.0522 0.0013 9 1 5.7635 4.5913 -0.8417 10 6 7.7215 4.0546 -0.1192 11 6 8.2301 5.4976 -0.1526 12 6 7.8471 6.2001 1.1539 13 7 6.3964 6.0758 1.3534 14 6 5.6364 7.1677 1.5689 15 8 4.4258 7.0631 1.6343 16 6 6.2671 8.4794 1.7244 17 1 7.3330 8.5859 1.5862 18 6 5.4885 9.5963 2.0522 19 7 4.1989 9.4674 2.2197 20 14 6.2933 11.2704 2.2499 21 1 6.3039 11.9723 0.9413 22 1 5.5279 12.0742 3.2365 23 1 7.6879 11.0957 2.7292 24 6 5.7898 4.7383 1.3094 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7359 3.4497 -0.0001 33 1 6.0499 2.0952 -0.8879 34 1 6.0485 2.0966 0.8920 35 1 8.1542 3.5368 0.7368 36 1 8.0140 3.5454 -1.0375 37 1 9.3145 5.4988 -0.2618 38 1 7.7785 6.0232 -0.9940 39 1 8.3699 5.7313 1.9876 40 1 8.1214 7.2534 1.0964 41 1 3.6597 10.2410 2.4471 42 1 4.7044 4.8276 1.3536 43 1 6.1427 4.1490 2.1558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330878738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:03 Heat of formation + Delta-G solvation = -100.916957 kcal Electronic energy + Delta-G solvation = -22467.226482 eV Core-core repulsion = 19125.183185 eV Total energy + Delta-G solvation = -3342.043297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.80377 -38.66988 -36.27828 -34.72014 -34.31420 -32.62409 -31.90056 -30.74670 -28.33221 -26.78478 -25.21426 -24.22510 -22.21633 -21.31899 -20.63489 -19.89381 -18.93863 -17.07411 -16.42066 -16.00118 -15.83969 -15.77418 -15.02956 -14.50067 -14.14447 -14.00697 -13.91044 -13.70162 -13.19049 -13.10251 -12.74418 -12.67086 -12.36638 -12.01233 -11.86989 -11.70110 -11.52555 -11.30022 -11.13761 -11.02326 -10.85589 -10.73486 -10.71964 -10.49956 -10.27228 -10.09597 -9.89451 -9.70228 -8.96971 -8.90265 -7.64382 -7.27054 -6.25207 -4.69820 2.71504 3.09924 3.17317 3.20041 3.28371 4.03702 4.44408 4.51397 4.72880 4.80747 4.89278 4.96759 5.05363 5.13375 5.32548 5.37985 5.42378 5.53417 5.58044 5.63677 5.68671 5.72559 5.86324 5.88491 5.94435 5.95812 6.03162 6.09145 6.17544 6.19039 6.36884 6.41731 6.47710 6.51151 6.57286 6.76114 7.40811 7.55850 7.59407 8.08705 8.29286 8.30341 8.97236 9.37666 10.51635 10.70191 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019771 B = 0.003800 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.870856 B = 7367.481264 C = 8642.054581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.144 4.144 4 C 0.511 3.489 5 O -0.551 6.551 6 N -0.728 5.728 7 C 0.128 3.872 8 C -0.116 4.116 9 H 0.078 0.922 10 C -0.105 4.105 11 C -0.134 4.134 12 C 0.121 3.879 13 N -0.642 5.642 14 C 0.559 3.441 15 O -0.580 6.580 16 C -0.544 4.544 17 H 0.073 0.927 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.265 1.265 24 C 0.127 3.873 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.406 0.594 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.092 0.908 41 H 0.268 0.732 42 H 0.082 0.918 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 -11.462 -4.975 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.184 4.184 4 C 0.298 3.702 5 O -0.429 6.429 6 N -0.380 5.380 7 C 0.004 3.996 8 C -0.136 4.136 9 H 0.096 0.904 10 C -0.143 4.143 11 C -0.173 4.173 12 C -0.004 4.004 13 N -0.380 5.380 14 C 0.366 3.634 15 O -0.463 6.463 16 C -0.581 4.581 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.396 5.396 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.189 1.189 24 C 0.003 3.997 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.242 0.758 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.384 -12.157 -4.871 13.102 hybrid contribution 0.321 1.295 0.069 1.336 sum 0.705 -10.862 -4.802 11.897 Atomic orbital electron populations 1.21801 0.95577 1.01777 1.01929 1.21259 0.95164 0.94793 1.03356 1.21742 0.91886 1.00051 1.04705 1.20755 0.90365 0.83517 0.75573 1.90671 1.70702 1.31432 1.50097 1.46160 1.07751 1.09033 1.75059 1.21371 0.79418 0.96886 1.01915 1.21833 0.96763 0.94203 1.00752 0.90381 1.21418 0.94106 0.97395 1.01419 1.21944 0.99978 0.95570 0.99790 1.21428 0.82831 1.01663 0.94455 1.48171 1.06594 1.05465 1.77754 1.18244 0.85934 0.83146 0.76106 1.90576 1.14267 1.85442 1.55990 1.20984 0.94922 0.91359 1.50789 0.90912 1.25729 0.94440 1.00175 0.92875 1.70011 1.05409 1.30557 1.33655 0.86395 0.79990 0.81957 0.78586 1.19715 1.20442 1.18872 1.21127 0.99807 0.84994 0.93814 0.92677 0.92553 0.92570 0.91428 0.91331 0.88666 0.88897 0.75847 0.91722 0.91565 0.91959 0.92349 0.91738 0.91740 0.94052 0.88964 0.92087 0.90006 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.88 16 2 C -0.11 -1.09 5.22 -26.73 -0.14 -1.23 16 3 C -0.14 -1.49 5.70 -27.89 -0.16 -1.65 16 4 C 0.51 7.00 7.83 -10.98 -0.09 6.92 16 5 O -0.55 -9.36 15.98 5.56 0.09 -9.27 16 6 N -0.73 -9.64 5.33 -60.29 -0.32 -9.97 16 7 C 0.13 1.73 5.07 -4.04 -0.02 1.71 16 8 C -0.12 -1.69 2.38 -90.50 -0.22 -1.91 16 9 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 10 C -0.11 -1.38 5.17 -26.69 -0.14 -1.51 16 11 C -0.13 -1.92 6.08 -26.61 -0.16 -2.08 16 12 C 0.12 2.15 6.31 -3.69 -0.02 2.13 16 13 N -0.64 -13.98 2.98 -174.40 -0.52 -14.50 16 14 C 0.56 15.38 7.62 -12.99 -0.10 15.28 16 15 O -0.58 -18.00 14.45 5.20 0.08 -17.93 16 16 C -0.54 -14.80 8.86 -35.64 -0.32 -15.12 16 17 H 0.07 1.80 5.69 -52.48 -0.30 1.50 16 18 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 19 N -0.77 -22.39 11.84 55.55 0.66 -21.74 16 20 Si 0.91 19.58 29.56 -169.99 -5.02 14.55 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 24 C 0.13 2.35 5.52 -3.71 -0.02 2.33 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.41 5.16 7.70 -40.82 -0.31 4.85 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.74 5.39 -51.93 -0.28 1.46 16 41 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 42 H 0.08 1.67 6.19 -51.93 -0.32 1.34 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 346.08 15.07 5.22 5.22 Total: -1.00 -34.04 346.08 -8.04 -42.08 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.11 Total: 5.30 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -1.11 Total: 6.26 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.18 Total: -46.20 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: 0.16 Total: -27.20 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.04 -8.04 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330878738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.839 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds