Wall clock time and date at job start Tue Mar 31 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47170 * 2 1 4 4 H 1.08998 * 109.47309 * 305.00089 * 3 2 1 5 5 C 1.50703 * 109.46977 * 184.99963 * 3 2 1 6 6 H 1.08002 * 120.00196 * 239.99635 * 5 3 2 7 7 C 1.37884 * 119.99823 * 60.00464 * 5 3 2 8 8 N 1.31510 * 119.99608 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99743 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47516 * 59.99951 * 9 7 5 11 11 H 1.48499 * 109.47083 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47308 * 299.99545 * 9 7 5 13 13 N 1.46505 * 109.47009 * 65.00211 * 3 2 1 14 14 C 1.34769 * 119.99848 * 274.99914 * 13 3 2 15 15 O 1.21281 * 120.00304 * 0.02562 * 14 13 3 16 16 C 1.50709 * 119.99797 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.46898 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47015 * 180.02562 * 17 16 14 19 19 C 1.53002 * 110.28752 * 63.02318 * 18 17 16 20 20 C 1.54479 * 110.24874 * 185.00300 * 18 17 16 21 21 C 1.54623 * 101.76734 * 144.41829 * 20 18 17 22 22 C 1.51282 * 104.31101 * 335.13584 * 21 20 18 23 23 O 1.21286 * 124.94199 * 196.27917 * 22 21 20 24 24 N 1.34735 * 109.93792 * 16.31290 * 22 21 20 25 25 H 1.09001 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46923 * 299.99895 * 1 2 3 27 27 H 1.09000 * 109.47161 * 59.99451 * 1 2 3 28 28 H 1.09003 * 109.46923 * 240.00104 * 2 1 3 29 29 H 1.09001 * 109.47207 * 119.99996 * 2 1 3 30 30 H 0.97008 * 119.99486 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99749 * 95.00081 * 13 3 2 32 32 H 1.08997 * 109.46451 * 60.00183 * 16 14 13 33 33 H 1.08999 * 109.47079 * 300.00299 * 16 14 13 34 34 H 1.08999 * 109.46799 * 60.00353 * 17 16 14 35 35 H 1.08999 * 109.47507 * 300.00045 * 17 16 14 36 36 H 1.08996 * 109.47665 * 181.97357 * 19 18 17 37 37 H 1.09001 * 109.47000 * 301.97934 * 19 18 17 38 38 H 1.09005 * 109.46793 * 61.97434 * 19 18 17 39 39 H 1.08994 * 110.96846 * 26.29266 * 20 18 17 40 40 H 1.09004 * 110.96814 * 262.53912 * 20 18 17 41 41 H 1.09002 * 110.48860 * 93.88058 * 21 20 18 42 42 H 1.08998 * 110.48497 * 216.38951 * 21 20 18 43 43 H 0.97003 * 124.30433 * 180.38606 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8889 0.6523 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5975 0.1472 -0.2350 11 1 6.3977 0.2178 -2.6510 12 1 6.4995 2.2815 -1.3822 13 7 1.6525 2.0975 1.2519 14 6 0.4352 2.6644 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0364 3.3376 2.6550 17 6 -1.3824 3.8946 2.5212 18 6 -1.7871 4.5786 3.8286 19 6 -0.8730 5.7735 4.1072 20 6 -3.2604 5.0376 3.7580 21 6 -3.7327 4.8066 5.2121 22 6 -2.8074 3.7322 5.7396 23 8 -3.0093 3.0686 6.7345 24 7 -1.7275 3.6234 4.9413 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0617 -2.9496 31 1 2.2720 2.1231 1.9978 32 1 0.7278 4.1528 2.8680 33 1 0.0674 2.6129 3.4686 34 1 -2.0740 3.0796 2.3079 35 1 -1.4130 4.6194 1.7078 36 1 -1.1502 6.2293 5.0576 37 1 0.1623 5.4358 4.1543 38 1 -0.9799 6.5068 3.3077 39 1 -3.8280 4.4212 3.0609 40 1 -3.3282 6.0916 3.4886 41 1 -3.6285 5.7206 5.7969 42 1 -4.7663 4.4610 5.2272 43 1 -1.0035 2.9937 5.0837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330885052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:22 Heat of formation + Delta-G solvation = -96.751637 kcal Electronic energy + Delta-G solvation = -22709.803144 eV Core-core repulsion = 19367.940468 eV Total energy + Delta-G solvation = -3341.862675 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84271 -39.06409 -37.35739 -35.14103 -33.03909 -32.36011 -31.56663 -30.96386 -29.36170 -27.13018 -25.96061 -23.69280 -22.75067 -21.01141 -20.57936 -19.78224 -19.29007 -17.40000 -16.82466 -16.32148 -15.85388 -15.30098 -15.28020 -14.92423 -14.43018 -14.17827 -13.90709 -13.63422 -13.29399 -13.07180 -12.82224 -12.70969 -12.48106 -12.39430 -11.92060 -11.67110 -11.49487 -11.29220 -11.19476 -11.06051 -10.95432 -10.84335 -10.72333 -10.35020 -10.17899 -10.02220 -9.65293 -9.30319 -9.08689 -8.97999 -8.51870 -7.83689 -6.14676 -4.24379 2.43956 3.15990 3.23163 3.28905 3.29558 3.39569 3.94828 4.09977 4.22561 4.33915 4.53495 4.72376 4.81723 5.05957 5.12558 5.16652 5.26593 5.27963 5.42637 5.44302 5.59146 5.62519 5.70291 5.74758 5.91738 6.06141 6.21708 6.37215 6.43331 6.64020 6.67343 6.87333 7.01740 7.17371 7.34736 7.44232 7.59433 7.71150 7.87956 8.09810 8.16311 8.65597 8.75377 9.12701 9.43308 10.90516 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030213 B = 0.003377 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.526212 B = 8289.033265 C = 8497.476468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.710 5.710 14 C 0.499 3.501 15 O -0.550 6.550 16 C -0.146 4.146 17 C -0.102 4.102 18 C 0.154 3.846 19 C -0.159 4.159 20 C -0.123 4.123 21 C -0.157 4.157 22 C 0.519 3.481 23 O -0.541 6.541 24 N -0.721 5.721 25 H 0.022 0.978 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.414 10.322 11.377 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.284 3.716 15 O -0.429 6.429 16 C -0.187 4.187 17 C -0.140 4.140 18 C 0.068 3.932 19 C -0.218 4.218 20 C -0.161 4.161 21 C -0.197 4.197 22 C 0.306 3.694 23 O -0.418 6.418 24 N -0.377 5.377 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.137 9.916 10.997 17.945 hybrid contribution 1.790 -0.350 0.282 1.846 sum -8.346 9.567 11.279 16.983 Atomic orbital electron populations 1.21831 0.98363 0.97989 1.01168 1.21935 0.92595 0.99895 1.02234 1.18761 0.94108 0.89155 0.81127 0.93370 1.21206 0.90791 1.39156 1.06277 0.92201 1.24888 0.98588 0.94793 0.95395 1.69886 1.35220 1.37473 1.09352 0.86523 0.84881 0.78302 0.77473 1.20170 1.21121 1.20198 1.46519 1.14761 1.55971 1.18475 1.20321 0.82745 0.79427 0.89111 1.90669 1.51409 1.60064 1.40802 1.21760 0.98300 1.01132 0.97489 1.21634 0.95933 1.01221 0.95226 1.21147 0.96027 0.89167 0.86897 1.22246 1.00078 0.97140 1.02292 1.22714 0.93986 1.03302 0.96124 1.22352 1.00655 0.99391 0.97282 1.20961 0.82659 0.83472 0.82323 1.90755 1.76344 1.48786 1.25922 1.46557 1.23801 1.39182 1.28142 0.95928 0.94331 0.93172 0.88334 0.95123 0.92498 0.78074 0.89173 0.90108 0.90351 0.89446 0.92256 0.91516 0.90825 0.89461 0.88973 0.87978 0.88154 0.75199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.61 2.24 -69.08 -0.15 6.46 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.86 8.73 -34.44 -0.30 -14.16 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.41 11.29 55.43 0.63 -23.79 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.71 -13.83 5.02 -54.93 -0.28 -14.11 16 14 C 0.50 8.92 6.40 -10.98 -0.07 8.85 16 15 O -0.55 -11.82 13.12 5.56 0.07 -11.75 16 16 C -0.15 -1.74 5.25 -27.88 -0.15 -1.88 16 17 C -0.10 -1.08 3.71 -26.73 -0.10 -1.18 16 18 C 0.15 1.26 0.87 -130.90 -0.11 1.14 16 19 C -0.16 -1.11 8.55 37.16 0.32 -0.79 16 20 C -0.12 -0.83 6.21 -25.10 -0.16 -0.99 16 21 C -0.16 -1.18 6.85 -26.74 -0.18 -1.37 16 22 C 0.52 5.92 8.46 -10.72 -0.09 5.83 16 23 O -0.54 -8.54 18.03 5.55 0.10 -8.44 16 24 N -0.72 -6.94 5.37 -46.53 -0.25 -7.19 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 27 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 28 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 6.54 8.54 -40.82 -0.35 6.19 16 32 H 0.09 0.91 6.53 -51.93 -0.34 0.57 16 33 H 0.08 0.84 6.74 -51.93 -0.35 0.49 16 34 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 35 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.48 6.49 -51.93 -0.34 0.14 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.61 7.88 -51.93 -0.41 0.20 16 40 H 0.09 0.45 7.89 -51.93 -0.41 0.04 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.41 3.84 7.51 -40.82 -0.31 3.53 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -32.02 339.85 -7.37 -39.38 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.82 Total: 7.79 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.92 Total: -2.30 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.10 Total: -45.08 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.17 Total: -20.19 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.02 -7.37 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330885052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.369 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds