Wall clock time and date at job start Tue Mar 31 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47536 * 2 1 4 4 H 1.08995 * 109.46762 * 305.00296 * 3 2 1 5 5 C 1.50698 * 109.47696 * 184.99869 * 3 2 1 6 6 H 1.08001 * 119.99936 * 240.00015 * 5 3 2 7 7 C 1.37878 * 119.99734 * 59.99716 * 5 3 2 8 8 N 1.31513 * 119.99929 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99701 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47135 * 90.00394 * 9 7 5 11 11 H 1.48505 * 109.46885 * 210.00183 * 9 7 5 12 12 H 1.48502 * 109.47145 * 329.99832 * 9 7 5 13 13 N 1.46506 * 109.46710 * 64.99716 * 3 2 1 14 14 C 1.34773 * 119.99968 * 275.00042 * 13 3 2 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 3 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47348 * 179.72561 * 16 14 13 18 18 C 1.52996 * 109.46929 * 179.97438 * 17 16 14 19 19 C 1.53000 * 110.21909 * 300.69892 * 18 17 16 20 20 C 1.54481 * 110.24281 * 178.77427 * 18 17 16 21 21 C 1.54635 * 101.76326 * 215.58377 * 20 18 17 22 22 C 1.51284 * 104.19343 * 24.79678 * 21 20 18 23 23 O 1.21277 * 124.93967 * 163.77626 * 22 21 20 24 24 N 1.34560 * 110.14058 * 343.67432 * 22 21 20 25 25 H 1.08996 * 109.46860 * 60.00376 * 1 2 3 26 26 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47201 * 300.00075 * 1 2 3 28 28 H 1.08997 * 109.47201 * 239.99924 * 2 1 3 29 29 H 1.08999 * 109.47444 * 120.00081 * 2 1 3 30 30 H 0.97001 * 119.99929 * 179.97438 * 8 7 5 31 31 H 0.96998 * 119.99507 * 95.00898 * 13 3 2 32 32 H 1.09001 * 109.46564 * 299.73030 * 16 14 13 33 33 H 1.08998 * 109.47012 * 59.72084 * 16 14 13 34 34 H 1.09000 * 109.46986 * 300.00089 * 17 16 14 35 35 H 1.09002 * 109.46857 * 60.00224 * 17 16 14 36 36 H 1.09002 * 109.47007 * 59.30074 * 19 18 17 37 37 H 1.08993 * 109.47484 * 179.30086 * 19 18 17 38 38 H 1.08999 * 109.47390 * 299.30250 * 19 18 17 39 39 H 1.08994 * 110.97257 * 333.70025 * 20 18 17 40 40 H 1.08999 * 110.97559 * 97.43084 * 20 18 17 41 41 H 1.08996 * 110.48712 * 143.47714 * 21 20 18 42 42 H 1.09004 * 110.48433 * 265.98886 * 21 20 18 43 43 H 0.97004 * 124.43426 * 179.64266 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8800 -1.3810 10 1 6.5539 -0.3520 -0.7597 11 1 6.3836 0.9214 -2.8164 12 1 6.5576 2.0720 -0.6888 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6644 1.3669 15 8 -0.3375 2.6366 0.4326 16 6 0.0366 3.3386 2.6545 17 6 -1.3798 3.9008 2.5186 18 6 -1.7846 4.5847 3.8260 19 6 -1.7364 3.5847 4.9829 20 6 -3.2017 5.1862 3.6981 21 6 -3.0744 6.4754 4.5426 22 6 -1.5965 6.7967 4.5085 23 8 -1.1114 7.8672 4.8078 24 7 -0.8979 5.7216 4.1002 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 2.2720 2.1231 1.9978 32 1 0.0633 2.6133 3.4677 33 1 0.7310 4.1509 2.8693 34 1 -1.4064 4.6260 1.7053 35 1 -2.0741 3.0884 2.3039 36 1 -0.7267 3.1846 5.0755 37 1 -2.0146 4.0870 5.9093 38 1 -2.4336 2.7697 4.7880 39 1 -3.4333 5.4217 2.6594 40 1 -3.9499 4.5152 4.1200 41 1 -3.6511 7.2840 4.0936 42 1 -3.4042 6.2952 5.5658 43 1 0.0666 5.7003 3.9988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330885053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:25 Heat of formation + Delta-G solvation = -96.856723 kcal Electronic energy + Delta-G solvation = -22687.633958 eV Core-core repulsion = 19345.766726 eV Total energy + Delta-G solvation = -3341.867232 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85243 -39.06671 -37.35416 -35.14459 -33.05655 -32.35966 -31.57290 -30.97070 -29.32459 -27.14218 -25.98586 -23.68518 -22.75311 -20.99779 -20.58294 -19.79276 -19.29521 -17.39070 -16.83678 -16.32882 -15.74922 -15.50637 -15.23262 -14.84788 -14.42889 -14.13681 -13.96964 -13.69744 -13.24599 -12.92280 -12.86950 -12.69706 -12.59003 -12.41912 -11.89067 -11.69205 -11.49880 -11.29666 -11.18164 -11.04980 -10.93466 -10.85314 -10.74584 -10.34082 -10.18200 -10.01661 -9.66490 -9.30295 -9.07874 -8.97820 -8.52412 -7.83829 -6.14801 -4.24332 2.45014 3.16839 3.22167 3.29515 3.31373 3.39545 3.95075 4.10031 4.22393 4.33890 4.53534 4.72548 4.81279 5.05919 5.12676 5.16671 5.26541 5.27802 5.43055 5.43949 5.59171 5.62203 5.69847 5.73835 5.92362 6.05373 6.21970 6.35677 6.41989 6.62685 6.67167 6.89071 7.00197 7.16733 7.34032 7.44046 7.59417 7.70916 7.88006 8.10584 8.16029 8.65604 8.75647 9.12756 9.43474 10.90456 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026663 B = 0.003495 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.906789 B = 8009.227068 C = 8647.656929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.499 3.501 15 O -0.550 6.550 16 C -0.147 4.147 17 C -0.102 4.102 18 C 0.154 3.846 19 C -0.160 4.160 20 C -0.124 4.124 21 C -0.156 4.156 22 C 0.519 3.481 23 O -0.542 6.542 24 N -0.720 5.720 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.610 4.809 13.611 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.284 3.716 15 O -0.430 6.430 16 C -0.187 4.187 17 C -0.140 4.140 18 C 0.067 3.933 19 C -0.218 4.218 20 C -0.161 4.161 21 C -0.196 4.196 22 C 0.305 3.695 23 O -0.419 6.419 24 N -0.376 5.376 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -11.998 5.248 12.896 18.380 hybrid contribution 1.856 -0.196 0.202 1.877 sum -10.143 5.053 13.099 17.320 Atomic orbital electron populations 1.21828 0.98365 0.97971 1.01181 1.21930 0.92604 0.99873 1.02230 1.18766 0.94138 0.89159 0.81149 0.93383 1.21241 0.90798 1.39025 1.06283 0.92156 1.24886 0.98592 0.94814 0.95380 1.69892 1.35119 1.37600 1.09330 0.86468 0.84908 0.78438 0.77410 1.20548 1.21056 1.19874 1.46518 1.14708 1.56032 1.18469 1.20330 0.82756 0.79404 0.89126 1.90669 1.51569 1.60099 1.40627 1.21772 0.98057 1.01051 0.97810 1.21634 0.96161 1.01004 0.95243 1.21148 0.89817 0.86561 0.95773 1.22251 1.03298 0.98867 0.97369 1.22711 0.95656 0.96173 1.01600 1.22350 0.94637 0.99756 1.02888 1.20927 0.90043 0.83178 0.75312 1.90753 1.76291 1.25017 1.49825 1.46501 1.10139 1.12766 1.68170 0.93186 0.95916 0.94299 0.88348 0.95116 0.92561 0.78074 0.89198 0.90038 0.90311 0.89482 0.91495 0.92260 0.90835 0.89455 0.88974 0.88141 0.87961 0.75136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.52 37.16 0.32 -2.61 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.59 2.24 -69.08 -0.15 6.44 16 4 H 0.05 1.38 7.57 -51.93 -0.39 0.98 16 5 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.43 11.29 55.43 0.63 -23.80 16 9 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.71 -13.81 5.02 -54.93 -0.28 -14.09 16 14 C 0.50 8.90 6.39 -10.98 -0.07 8.83 16 15 O -0.55 -11.82 13.14 5.56 0.07 -11.75 16 16 C -0.15 -1.73 5.21 -27.88 -0.15 -1.88 16 17 C -0.10 -1.09 3.70 -26.73 -0.10 -1.19 16 18 C 0.15 1.25 0.87 -130.90 -0.11 1.14 16 19 C -0.16 -1.10 8.43 37.16 0.31 -0.78 16 20 C -0.12 -0.83 6.21 -25.09 -0.16 -0.99 16 21 C -0.16 -1.18 6.86 -26.74 -0.18 -1.37 16 22 C 0.52 5.96 8.43 -10.80 -0.09 5.87 16 23 O -0.54 -8.62 18.03 5.56 0.10 -8.52 16 24 N -0.72 -6.99 5.40 -46.58 -0.25 -7.24 16 25 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.79 5.65 -51.93 -0.29 0.50 16 28 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.39 6.53 8.54 -40.82 -0.35 6.18 16 32 H 0.09 0.89 6.46 -51.93 -0.34 0.55 16 33 H 0.08 0.86 6.89 -51.93 -0.36 0.50 16 34 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.07 0.47 6.45 -51.93 -0.34 0.14 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.61 7.91 -51.93 -0.41 0.20 16 40 H 0.09 0.45 7.89 -51.93 -0.41 0.04 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.41 3.90 7.69 -40.82 -0.31 3.58 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -32.13 340.03 -7.38 -39.51 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.83 Total: 7.60 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.92 Total: -2.20 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.10 Total: -45.14 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.17 Total: -20.27 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.13 -7.38 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330885053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.346 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds