Wall clock time and date at job start Tue Mar 31 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46748 * 2 1 4 4 N 1.46501 * 109.46898 * 179.97438 * 3 2 1 5 5 C 1.36119 * 120.00125 * 260.44068 * 4 3 2 6 6 H 1.08006 * 119.99947 * 198.41667 * 5 4 3 7 7 C 1.39586 * 120.00045 * 18.41257 * 5 4 3 8 8 N 1.31013 * 119.99585 * 14.80608 * 7 5 4 9 9 Si 1.86804 * 120.00200 * 194.80578 * 7 5 4 10 10 H 1.48503 * 109.46618 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47007 * 120.00051 * 9 7 5 12 12 H 1.48499 * 109.46785 * 240.00231 * 9 7 5 13 13 C 1.34786 * 120.00055 * 80.43685 * 4 3 2 14 14 O 1.21497 * 120.00059 * 187.54188 * 13 4 3 15 15 C 1.48828 * 119.99986 * 7.54348 * 13 4 3 16 16 O 1.21446 * 119.99670 * 5.91271 * 15 13 4 17 17 N 1.34769 * 120.00326 * 185.90900 * 15 13 4 18 18 C 1.46926 * 120.62791 * 7.03129 * 17 15 13 19 19 C 1.53190 * 108.78054 * 126.36841 * 18 17 15 20 20 C 1.53042 * 109.31195 * 54.62986 * 19 18 17 21 21 C 1.53041 * 109.54102 * 298.64398 * 20 19 18 22 22 H 1.09004 * 109.49231 * 301.41165 * 21 20 19 23 23 C 1.52999 * 109.49747 * 181.31514 * 21 20 19 24 24 C 1.46921 * 120.63484 * 186.74769 * 17 15 13 25 25 H 1.09000 * 109.47136 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47542 * 300.00351 * 1 2 3 27 27 H 1.09000 * 109.47480 * 60.00493 * 1 2 3 28 28 H 1.09000 * 109.47263 * 240.00369 * 2 1 3 29 29 H 1.08998 * 109.47385 * 120.00041 * 2 1 3 30 30 H 1.08998 * 109.47460 * 299.99405 * 3 2 1 31 31 H 1.08994 * 109.47369 * 60.00080 * 3 2 1 32 32 H 0.97002 * 119.99777 * 180.02562 * 8 7 5 33 33 H 1.09008 * 109.58631 * 246.15715 * 18 17 15 34 34 H 1.09002 * 109.59067 * 6.57398 * 18 17 15 35 35 H 1.08991 * 109.50078 * 174.58706 * 19 18 17 36 36 H 1.09003 * 109.49409 * 294.65181 * 19 18 17 37 37 H 1.09001 * 109.45436 * 58.65943 * 20 19 18 38 38 H 1.09003 * 109.46018 * 178.61598 * 20 19 18 39 39 H 1.09006 * 109.47305 * 59.99758 * 23 21 20 40 40 H 1.08997 * 109.47005 * 179.97438 * 23 21 20 41 41 H 1.08990 * 109.47234 * 299.99849 * 23 21 20 42 42 H 1.09004 * 109.58452 * 353.42314 * 24 17 15 43 43 H 1.09004 * 109.58510 * 113.84248 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1850 1.6385 1.1633 6 1 5.2236 1.9339 1.1382 7 6 3.5402 1.4578 2.3881 8 7 2.3915 0.8297 2.4371 9 14 4.3151 2.1114 3.9571 10 1 5.6024 2.7773 3.6331 11 1 3.3973 3.0913 4.5915 12 1 4.5615 0.9856 4.8936 13 6 4.1793 1.2485 -1.1501 14 8 5.3864 1.1116 -1.1311 15 6 3.4454 1.2019 -2.4440 16 8 2.2560 1.4451 -2.4765 17 7 4.1007 0.8900 -3.5796 18 6 5.5002 0.4447 -3.5381 19 6 5.6153 -0.8898 -4.2815 20 6 5.0473 -0.7329 -5.6939 21 6 3.5673 -0.3521 -5.6111 22 1 3.0238 -1.1218 -5.0629 23 6 2.9922 -0.2276 -7.0234 24 6 3.4273 0.9830 -4.8821 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.9432 0.7044 3.2881 33 1 6.1347 1.1879 -4.0210 34 1 5.8114 0.3136 -2.5017 35 1 6.6632 -1.1837 -4.3414 36 1 5.0530 -1.6545 -3.7456 37 1 5.5944 0.0490 -6.2205 38 1 5.1504 -1.6744 -6.2335 39 1 3.0934 -1.1809 -7.5423 40 1 1.9381 0.0431 -6.9638 41 1 3.5353 0.5430 -7.5702 42 1 2.3711 1.2070 -4.7323 43 1 3.8893 1.7710 -5.4769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331004093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:16 Heat of formation + Delta-G solvation = -48.917036 kcal Electronic energy + Delta-G solvation = -23932.525339 eV Core-core repulsion = 20592.736928 eV Total energy + Delta-G solvation = -3339.788411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09546 -38.22049 -36.80045 -35.58258 -33.22387 -32.32226 -31.54646 -31.36441 -27.02234 -26.10838 -25.66806 -24.45392 -22.11239 -21.99915 -20.55927 -19.96276 -18.67223 -17.18858 -16.06638 -16.03321 -15.29277 -15.08072 -14.75666 -14.25630 -14.14853 -13.89940 -13.63179 -13.45833 -13.18616 -12.92395 -12.59394 -12.36069 -12.14664 -12.01499 -11.77606 -11.56431 -11.41407 -11.04527 -10.89222 -10.82661 -10.72862 -10.66526 -10.37745 -10.34890 -10.29611 -10.24989 -9.83703 -9.26017 -8.83431 -8.18926 -7.92877 -7.55446 -6.46241 -3.98492 2.48960 3.12512 3.15997 3.21780 3.38995 4.04304 4.27498 4.73473 4.86898 4.92043 5.02640 5.05881 5.28683 5.48092 5.52122 5.59950 5.63065 5.73553 5.83436 5.89362 5.96730 6.06480 6.12699 6.17044 6.19932 6.25077 6.29699 6.45557 6.55086 6.62791 6.78865 6.92723 6.99359 7.06141 7.14635 7.27806 7.47654 7.73295 7.82167 7.96524 8.36118 8.69220 9.05533 9.25860 9.83491 10.44668 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.005280 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.279850 B = 5301.487915 C = 6061.162305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C 0.099 3.901 4 N -0.376 5.376 5 C -0.306 4.306 6 H 0.108 0.892 7 C 0.036 3.964 8 N -0.841 5.841 9 Si 0.931 3.069 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.394 3.606 14 O -0.584 6.584 15 C 0.515 3.485 16 O -0.538 6.538 17 N -0.594 5.594 18 C 0.064 3.936 19 C -0.135 4.135 20 C -0.114 4.114 21 C -0.107 4.107 22 H 0.073 0.927 23 C -0.143 4.143 24 C 0.114 3.886 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.040 0.960 28 H 0.026 0.974 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.272 0.728 33 H 0.053 0.947 34 H 0.159 0.841 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 -2.121 -10.887 11.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C -0.023 4.023 4 N -0.090 5.090 5 C -0.436 4.436 6 H 0.125 0.875 7 C -0.171 4.171 8 N -0.478 5.478 9 Si 0.757 3.243 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.182 3.818 14 O -0.474 6.474 15 C 0.302 3.698 16 O -0.416 6.416 17 N -0.328 5.328 18 C -0.057 4.057 19 C -0.173 4.173 20 C -0.152 4.152 21 C -0.126 4.126 22 H 0.091 0.909 23 C -0.201 4.201 24 C -0.009 4.009 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.175 0.825 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.176 -2.082 -10.717 10.919 hybrid contribution 0.192 0.118 0.555 0.599 sum 0.015 -1.963 -10.163 10.350 Atomic orbital electron populations 1.21535 0.97316 0.99652 1.00560 1.21716 0.94130 0.97903 1.01248 1.22187 0.79013 0.97991 1.03138 1.43549 1.06764 1.53141 1.05534 1.19933 0.98185 1.43376 0.82058 0.87465 1.25543 0.96216 0.95548 0.99832 1.69938 1.15677 1.35261 1.26957 0.85783 0.79468 0.78731 0.80317 1.18906 1.20336 1.20453 1.19089 0.87800 0.90194 0.84730 1.90184 1.14210 1.58209 1.84828 1.20655 0.86793 0.76662 0.85696 1.90539 1.15147 1.49861 1.86070 1.47883 1.13680 1.66056 1.05139 1.23048 0.80765 0.93676 1.08237 1.21958 1.00947 0.98823 0.95601 1.21605 0.95207 1.01014 0.97325 1.21416 0.96755 0.98201 0.96260 0.90903 1.21754 1.00869 1.01643 0.95785 1.21508 0.99333 0.96260 0.83787 0.94453 0.93078 0.94041 0.95535 0.88919 0.89578 0.89206 0.91660 0.92853 0.82493 0.91142 0.91907 0.92106 0.92301 0.92598 0.92507 0.92667 0.89303 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.91 37.16 0.37 -2.19 16 2 C -0.11 -2.55 5.36 -26.73 -0.14 -2.69 16 3 C 0.10 2.40 4.15 -4.04 -0.02 2.38 16 4 N -0.38 -9.82 2.63 -115.58 -0.30 -10.13 16 5 C -0.31 -8.22 9.31 -15.15 -0.14 -8.36 16 6 H 0.11 2.96 7.42 -52.48 -0.39 2.57 16 7 C 0.04 0.89 5.04 -17.40 -0.09 0.80 16 8 N -0.84 -20.82 8.36 55.53 0.46 -20.36 16 9 Si 0.93 19.47 29.58 -169.99 -5.03 14.44 16 10 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.39 9.98 7.43 -11.87 -0.09 9.89 16 14 O -0.58 -15.30 12.81 5.37 0.07 -15.23 16 15 C 0.51 11.54 7.24 -11.88 -0.09 11.46 16 16 O -0.54 -12.43 11.94 5.41 0.06 -12.37 16 17 N -0.59 -11.10 2.98 -173.77 -0.52 -11.62 16 18 C 0.06 1.11 6.03 -3.71 -0.02 1.08 16 19 C -0.13 -1.88 6.08 -26.61 -0.16 -2.05 16 20 C -0.11 -1.35 5.17 -26.69 -0.14 -1.49 16 21 C -0.11 -1.36 2.86 -90.72 -0.26 -1.61 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 23 C -0.14 -1.42 9.20 37.16 0.34 -1.08 16 24 C 0.11 1.73 5.70 -3.94 -0.02 1.71 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.62 7.36 -51.93 -0.38 0.24 16 29 H 0.09 2.31 6.16 -51.93 -0.32 1.99 16 30 H 0.09 2.09 5.07 -52.39 -0.27 1.83 16 31 H 0.09 2.26 6.01 -51.93 -0.31 1.95 16 32 H 0.27 6.31 8.30 -40.82 -0.34 5.97 16 33 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 34 H 0.16 3.26 4.18 -55.57 -0.23 3.03 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -27.77 330.42 -7.62 -35.39 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.90 Total: 7.04 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -0.46 Total: 7.85 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.36 Total: -42.11 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: 0.13 Total: -27.60 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.77 -7.62 -35.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331004093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.527 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds