Wall clock time and date at job start Tue Mar 31 2020 06:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 N 1.46499 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.36127 * 119.99739 * 273.92884 * 4 3 2 6 6 H 1.07998 * 120.00133 * 134.76376 * 5 4 3 7 7 C 1.39590 * 119.99801 * 314.76248 * 5 4 3 8 8 N 1.31012 * 119.99526 * 1.72419 * 7 5 4 9 9 Si 1.86797 * 119.99921 * 181.72634 * 7 5 4 10 10 H 1.48501 * 109.46962 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47098 * 120.00101 * 9 7 5 12 12 H 1.48502 * 109.47032 * 239.99806 * 9 7 5 13 13 C 1.34774 * 120.00413 * 93.91966 * 4 3 2 14 14 O 1.21508 * 120.00275 * 185.10943 * 13 4 3 15 15 C 1.48833 * 119.99999 * 5.11302 * 13 4 3 16 16 O 1.21437 * 119.99870 * 275.75955 * 15 13 4 17 17 N 1.34773 * 119.99837 * 95.75753 * 15 13 4 18 18 C 1.46931 * 120.63214 * 354.21879 * 17 15 13 19 19 C 1.53629 * 108.53855 * 126.37050 * 18 17 15 20 20 C 1.53046 * 109.24236 * 54.85787 * 19 18 17 21 21 C 1.52996 * 109.44723 * 178.49335 * 20 19 18 22 22 C 1.53040 * 109.53922 * 298.50934 * 20 19 18 23 23 C 1.46928 * 120.62830 * 174.50541 * 17 15 13 24 24 H 1.09005 * 109.46836 * 299.99945 * 1 2 3 25 25 H 1.08998 * 109.47355 * 60.00231 * 1 2 3 26 26 H 1.09004 * 109.46944 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47309 * 239.99864 * 2 1 3 28 28 H 1.08998 * 109.47355 * 119.99769 * 2 1 3 29 29 H 1.08996 * 109.47565 * 59.99801 * 3 2 1 30 30 H 1.09004 * 109.47027 * 299.99663 * 3 2 1 31 31 H 0.97007 * 119.99338 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.58928 * 246.20193 * 18 17 15 33 33 H 1.08997 * 109.58315 * 6.63165 * 18 17 15 34 34 H 1.08994 * 109.63314 * 294.86446 * 19 18 17 35 35 H 1.09000 * 109.42745 * 174.72555 * 19 18 17 36 36 H 1.09001 * 109.45815 * 58.52714 * 20 19 18 37 37 H 1.09000 * 109.47050 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47679 * 300.06492 * 21 20 19 39 39 H 1.09004 * 109.46801 * 60.06276 * 21 20 19 40 40 H 1.08999 * 109.49587 * 301.41533 * 22 20 19 41 41 H 1.08998 * 109.49718 * 181.31352 * 22 20 19 42 42 H 1.08998 * 109.58831 * 353.37113 * 23 17 15 43 43 H 1.09001 * 109.58681 * 113.65627 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1860 1.3617 1.1752 6 1 5.0265 0.6898 1.2674 7 6 3.7981 2.1473 2.2619 8 7 2.7580 2.9374 2.1608 9 14 4.7621 2.0720 3.8602 10 1 5.8843 1.1101 3.7165 11 1 5.3024 3.4186 4.1763 12 1 3.8663 1.6279 4.9581 13 6 4.1784 1.5226 -1.1653 14 8 5.3899 1.4293 -1.1743 15 6 3.4382 1.7253 -2.4405 16 8 2.9643 0.7725 -3.0255 17 7 3.2939 2.9663 -2.9459 18 6 3.7498 4.1405 -2.1894 19 6 4.6899 4.9630 -3.0838 20 6 3.9737 5.2991 -4.3939 21 6 4.8923 6.1502 -5.2728 22 6 3.6191 4.0050 -5.1300 23 6 2.6720 3.1712 -4.2612 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 2.4882 3.4830 2.9161 32 1 2.8905 4.7467 -1.9027 33 1 4.2841 3.8151 -1.2969 34 1 5.5891 4.3857 -3.2984 35 1 4.9628 5.8854 -2.5713 36 1 3.0615 5.8549 -4.1768 37 1 4.3824 6.3901 -6.2058 38 1 5.1450 7.0719 -4.7487 39 1 5.8043 5.5942 -5.4903 40 1 4.5285 3.4368 -5.3254 41 1 3.1300 4.2457 -6.0738 42 1 2.4950 2.2062 -4.7361 43 1 1.7254 3.6978 -4.1398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331006558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:09 Heat of formation + Delta-G solvation = -82.125953 kcal Electronic energy + Delta-G solvation = -23901.722778 eV Core-core repulsion = 20560.494319 eV Total energy + Delta-G solvation = -3341.228458 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13671 -38.22377 -36.96809 -35.35734 -33.67503 -32.73145 -31.33360 -30.97042 -28.30850 -26.22966 -25.29040 -23.67787 -23.15782 -21.81051 -20.79863 -20.04762 -18.42446 -17.27031 -16.72621 -16.13088 -15.43557 -14.85236 -14.56178 -14.28338 -14.24326 -14.01326 -13.77202 -13.59641 -13.35119 -13.07070 -12.73182 -12.53218 -12.28178 -11.81377 -11.79343 -11.64301 -11.46968 -11.27732 -11.11864 -11.03424 -10.86495 -10.71481 -10.45493 -10.34829 -10.33376 -10.31121 -10.17969 -9.77239 -9.04914 -8.39293 -8.34930 -7.57720 -6.35835 -4.20119 2.97410 3.04547 3.14762 3.22401 3.30982 3.80157 4.08903 4.62271 4.78891 4.81322 4.90427 4.93991 5.21289 5.36467 5.46356 5.51533 5.57952 5.65991 5.67946 5.77275 5.82910 5.84053 5.93223 5.99239 6.08195 6.12013 6.17394 6.18143 6.19866 6.29156 6.49193 6.55129 6.61358 6.77442 6.83474 7.02691 7.30818 7.58402 7.66311 8.15945 8.37729 8.51026 8.97035 9.19235 9.78041 10.59300 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.006154 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.058433 B = 4548.583315 C = 5446.226669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.088 3.912 4 N -0.415 5.415 5 C -0.311 4.311 6 H 0.091 0.909 7 C 0.045 3.955 8 N -0.872 5.872 9 Si 0.926 3.074 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.456 3.544 14 O -0.559 6.559 15 C 0.524 3.476 16 O -0.539 6.539 17 N -0.600 5.600 18 C 0.110 3.890 19 C -0.129 4.129 20 C -0.093 4.093 21 C -0.145 4.145 22 C -0.128 4.128 23 C 0.110 3.890 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.135 0.865 30 H 0.039 0.961 31 H 0.271 0.729 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.253 6.448 -8.329 11.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C -0.035 4.035 4 N -0.134 5.134 5 C -0.440 4.440 6 H 0.108 0.892 7 C -0.159 4.159 8 N -0.510 5.510 9 Si 0.753 3.247 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.239 3.761 14 O -0.441 6.441 15 C 0.309 3.691 16 O -0.415 6.415 17 N -0.336 5.336 18 C -0.013 4.013 19 C -0.167 4.167 20 C -0.111 4.111 21 C -0.202 4.202 22 C -0.166 4.166 23 C -0.013 4.013 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.003 6.004 -8.488 10.822 hybrid contribution 0.284 0.069 0.688 0.747 sum -2.719 6.073 -7.801 10.253 Atomic orbital electron populations 1.21633 0.96436 1.00571 1.01223 1.21873 0.94836 0.98916 1.01903 1.22099 0.81417 0.95624 1.04377 1.43168 1.05140 1.61083 1.03966 1.19423 1.14258 1.22676 0.87594 0.89161 1.25610 0.96098 0.94050 1.00171 1.69355 1.24199 1.25120 1.32285 0.85861 0.79797 0.78489 0.80597 1.19011 1.20435 1.20590 1.19875 0.87852 0.83894 0.84441 1.90664 1.12975 1.54869 1.85640 1.21018 0.78294 0.82528 0.87244 1.90678 1.48173 1.40451 1.62246 1.48072 1.60227 1.06128 1.19160 1.21851 0.98087 0.86389 0.94987 1.22054 0.98944 1.00162 0.95522 1.21139 0.98896 0.95840 0.95271 1.21815 0.99595 0.99555 0.99267 1.21980 1.00255 0.96232 0.98156 1.21565 0.95220 1.01169 0.83299 0.92811 0.93439 0.93521 0.92809 0.91719 0.84816 0.94224 0.91795 0.91127 0.88546 0.91180 0.90759 0.91058 0.92875 0.92680 0.92711 0.91460 0.90968 0.89186 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.14 -2.84 6.24 -26.73 -0.17 -3.01 16 3 C 0.09 2.02 4.99 -4.04 -0.02 2.00 16 4 N -0.41 -10.64 2.50 -115.57 -0.29 -10.93 16 5 C -0.31 -8.39 8.81 -15.14 -0.13 -8.52 16 6 H 0.09 2.55 7.78 -52.49 -0.41 2.14 16 7 C 0.05 1.15 5.39 -17.40 -0.09 1.05 16 8 N -0.87 -21.83 10.74 55.53 0.60 -21.24 16 9 Si 0.93 19.94 29.56 -169.99 -5.02 14.92 16 10 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 13 C 0.46 11.80 5.37 -11.88 -0.06 11.73 16 14 O -0.56 -16.01 17.04 5.36 0.09 -15.92 16 15 C 0.52 11.95 5.51 -11.88 -0.07 11.88 16 16 O -0.54 -13.06 16.51 5.42 0.09 -12.97 16 17 N -0.60 -11.05 2.97 -173.23 -0.51 -11.56 16 18 C 0.11 1.86 6.38 -3.48 -0.02 1.84 16 19 C -0.13 -1.77 5.38 -26.38 -0.14 -1.91 16 20 C -0.09 -1.05 2.68 -90.58 -0.24 -1.29 16 21 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16 22 C -0.13 -1.53 5.36 -26.61 -0.14 -1.67 16 23 C 0.11 1.60 6.41 -3.71 -0.02 1.58 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 1.18 8.11 -51.93 -0.42 0.76 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.13 3.25 5.15 -51.93 -0.27 2.98 16 30 H 0.04 0.88 6.64 -51.93 -0.34 0.53 16 31 H 0.27 6.38 8.30 -40.82 -0.34 6.04 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.10 2.00 6.32 -51.93 -0.33 1.67 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.41 7.04 -51.93 -0.37 1.04 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -30.15 345.61 -7.44 -37.59 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.19 Total: 4.26 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -0.41 Total: 10.64 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.21 Total: -43.73 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: 0.18 Total: -28.88 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.15 -7.44 -37.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331006558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.540 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds