Wall clock time and date at job start Tue Mar 31 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47689 * 2 1 4 4 C 1.50703 * 109.47412 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99426 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99869 * 179.97438 * 4 3 2 7 7 C 1.46959 * 120.65599 * 3.84333 * 6 4 3 8 8 C 1.53197 * 108.88785 * 126.46222 * 7 6 4 9 9 C 1.53045 * 109.31455 * 54.55606 * 8 7 6 10 10 C 1.53044 * 109.53848 * 298.63902 * 9 8 7 11 11 C 1.46932 * 120.62829 * 183.65583 * 6 4 3 12 12 H 1.08997 * 109.58046 * 113.68187 * 11 6 4 13 13 C 1.50703 * 109.58491 * 353.40128 * 11 6 4 14 14 O 1.21277 * 119.99934 * 294.58152 * 13 11 6 15 15 N 1.34776 * 119.99898 * 114.58347 * 13 11 6 16 16 C 1.46503 * 120.00026 * 179.97438 * 15 13 11 17 17 C 1.50699 * 109.47223 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99666 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00262 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99859 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00343 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46822 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46964 * 239.99831 * 21 19 17 24 24 H 1.48497 * 109.47113 * 119.99677 * 21 19 17 25 25 H 1.09004 * 109.46976 * 59.99663 * 1 2 3 26 26 H 1.08991 * 109.47787 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47253 * 300.00418 * 1 2 3 28 28 H 1.09000 * 109.46772 * 239.99799 * 2 1 3 29 29 H 1.09004 * 109.46976 * 120.00337 * 2 1 3 30 30 H 1.09000 * 109.47177 * 60.00048 * 3 2 1 31 31 H 1.09004 * 109.47186 * 300.00208 * 3 2 1 32 32 H 1.08996 * 109.59606 * 6.60726 * 7 6 4 33 33 H 1.08996 * 109.46719 * 246.24531 * 7 6 4 34 34 H 1.09000 * 109.49892 * 294.60703 * 8 7 6 35 35 H 1.08997 * 109.52616 * 174.52253 * 8 7 6 36 36 H 1.08988 * 109.46228 * 178.61483 * 9 8 7 37 37 H 1.08999 * 109.45589 * 58.65325 * 9 8 7 38 38 H 1.09003 * 109.49442 * 301.41057 * 10 9 8 39 39 H 1.08995 * 109.52231 * 181.33246 * 10 9 8 40 40 H 0.97006 * 120.00254 * 0.02562 * 15 13 11 41 41 H 1.08996 * 109.46767 * 60.00263 * 16 15 13 42 42 H 1.08998 * 109.46819 * 299.99950 * 16 15 13 43 43 H 0.96999 * 120.00333 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 -0.0006 5 8 4.1534 0.3919 -0.0006 6 7 4.2210 2.6095 -0.0013 7 6 3.5033 3.8891 0.0834 8 6 4.0794 4.7048 1.2452 9 6 5.5928 4.8436 1.0649 10 6 6.2395 3.4566 1.0810 11 6 5.6880 2.6268 -0.0825 12 1 5.9962 3.0730 -1.0280 13 6 6.2155 1.2180 0.0070 14 8 6.0709 0.5800 1.0282 15 7 6.8481 0.6670 -1.0479 16 6 7.3615 -0.7024 -0.9607 17 6 8.0206 -1.0756 -2.2635 18 1 8.0534 -0.3641 -3.0754 19 6 8.5808 -2.3257 -2.4194 20 7 8.5404 -3.1922 -1.4310 21 14 9.3972 -2.7887 -4.0345 22 1 9.3094 -1.6460 -4.9789 23 1 8.7070 -3.9668 -4.6182 24 1 10.8237 -3.1213 -3.7906 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 2.4436 3.7031 0.2577 33 1 3.6314 4.4397 -0.8485 34 1 3.8703 4.1957 2.1860 35 1 3.6223 5.6942 1.2575 36 1 6.0017 5.4444 1.8771 37 1 5.8018 5.3306 0.1124 38 1 6.0101 2.9592 2.0235 39 1 7.3198 3.5572 0.9763 40 1 6.9641 1.1774 -1.8646 41 1 6.5374 -1.3872 -0.7607 42 1 8.0911 -0.7661 -0.1535 43 1 8.1168 -2.9518 -0.5921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331188243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:00 Heat of formation + Delta-G solvation = -88.483077 kcal Electronic energy + Delta-G solvation = -23386.041630 eV Core-core repulsion = 20044.537506 eV Total energy + Delta-G solvation = -3341.504124 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67356 -38.02554 -37.29321 -34.42683 -34.09351 -32.93433 -32.27177 -31.36321 -28.15112 -26.87681 -25.26622 -23.83895 -22.56549 -21.96902 -20.66761 -19.86957 -18.79295 -17.55047 -16.73254 -16.13436 -15.94025 -15.58532 -14.85266 -14.59460 -14.26983 -14.09836 -13.87344 -13.71923 -13.66817 -13.25929 -12.95943 -12.79457 -12.52491 -12.08030 -12.03824 -11.78729 -11.58542 -11.54730 -11.26519 -11.13108 -10.98436 -10.85907 -10.80942 -10.73934 -10.68594 -10.13112 -9.19770 -8.87382 -8.63785 -8.57861 -8.49632 -7.71583 -6.39936 -4.11489 2.77328 2.85172 3.42792 3.48332 3.60154 3.83862 4.05172 4.51602 4.54951 4.59717 4.70038 4.81571 4.84984 4.96475 4.99434 5.11426 5.23902 5.30532 5.37931 5.39233 5.41526 5.51393 5.54630 5.60696 5.65527 5.72226 5.74414 5.89306 5.93142 5.99120 6.14585 6.25018 6.34715 6.51186 7.22550 7.44434 7.47297 7.60363 7.83914 8.39500 8.43741 8.66861 8.88526 9.32505 9.63201 11.00519 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.004946 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.657512 B = 5659.510660 C = 6887.600167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.132 4.132 4 C 0.495 3.505 5 O -0.480 6.480 6 N -0.609 5.609 7 C 0.111 3.889 8 C -0.137 4.137 9 C -0.117 4.117 10 C -0.121 4.121 11 C 0.127 3.873 12 H 0.080 0.920 13 C 0.521 3.479 14 O -0.539 6.539 15 N -0.708 5.708 16 C 0.248 3.752 17 C -0.619 4.619 18 H 0.055 0.945 19 C 0.021 3.979 20 N -0.906 5.906 21 Si 1.081 2.919 22 H -0.289 1.289 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.386 0.614 41 H 0.018 0.982 42 H 0.011 0.989 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.927 18.880 2.291 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.172 4.172 4 C 0.282 3.718 5 O -0.351 6.351 6 N -0.347 5.347 7 C -0.012 4.012 8 C -0.175 4.175 9 C -0.155 4.155 10 C -0.160 4.160 11 C 0.020 3.980 12 H 0.098 0.902 13 C 0.306 3.694 14 O -0.416 6.416 15 N -0.357 5.357 16 C 0.127 3.873 17 C -0.657 4.657 18 H 0.073 0.927 19 C -0.185 4.185 20 N -0.541 5.541 21 Si 0.909 3.091 22 H -0.215 1.215 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.218 0.782 41 H 0.036 0.964 42 H 0.028 0.972 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.906 16.540 2.246 21.099 hybrid contribution -0.779 1.719 0.368 1.923 sum -13.685 18.259 2.614 22.968 Atomic orbital electron populations 1.21773 0.95633 1.01914 1.01386 1.21307 0.94974 0.94732 1.04058 1.21689 0.91804 1.00112 1.03557 1.20928 0.90437 0.83552 0.76856 1.90951 1.68011 1.30345 1.45842 1.48024 1.05100 1.06255 1.75337 1.21723 0.96494 0.84220 0.98750 1.21940 0.96428 1.00114 0.99015 1.21507 0.95021 0.96665 1.02260 1.21798 1.00331 0.95002 0.98877 1.21236 0.80874 0.96382 0.99520 0.90201 1.19614 0.78325 0.86658 0.84813 1.90620 1.57453 1.62324 1.31252 1.46090 1.57651 1.17496 1.14413 1.19037 0.93407 0.77698 0.97173 1.22145 1.41637 1.02647 0.99308 0.92694 1.25845 0.95940 0.92495 1.04201 1.70669 1.41508 1.37029 1.04887 0.83383 0.76370 0.75471 0.73860 1.21537 1.21229 1.21218 0.92858 0.92408 0.92903 0.91036 0.91070 0.89395 0.89283 0.89569 0.91343 0.91292 0.90664 0.91336 0.91649 0.90269 0.90506 0.78240 0.96378 0.97158 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.04 16 2 C -0.11 -1.44 5.22 -26.74 -0.14 -1.58 16 3 C -0.13 -1.51 4.08 -27.88 -0.11 -1.63 16 4 C 0.49 8.19 7.56 -10.99 -0.08 8.11 16 5 O -0.48 -10.89 11.51 -19.29 -0.22 -11.11 16 6 N -0.61 -8.48 2.98 -166.51 -0.50 -8.98 16 7 C 0.11 0.97 6.33 -3.69 -0.02 0.95 16 8 C -0.14 -1.09 6.08 -26.61 -0.16 -1.25 16 9 C -0.12 -1.05 5.88 -26.69 -0.16 -1.21 16 10 C -0.12 -1.60 5.30 -26.61 -0.14 -1.74 16 11 C 0.13 1.99 3.31 -68.75 -0.23 1.76 16 12 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 13 C 0.52 11.54 4.39 -10.98 -0.05 11.50 16 14 O -0.54 -14.27 14.51 -19.28 -0.28 -14.55 16 15 N -0.71 -16.74 5.55 -61.47 -0.34 -17.09 16 16 C 0.25 7.17 4.74 -5.19 -0.02 7.14 16 17 C -0.62 -18.15 9.28 -34.44 -0.32 -18.47 16 18 H 0.05 1.53 7.60 -52.48 -0.40 1.13 16 19 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 20 N -0.91 -28.87 13.65 55.43 0.76 -28.12 16 21 Si 1.08 25.70 29.90 -169.99 -5.08 20.61 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 29 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 30 H 0.09 0.81 7.53 -51.93 -0.39 0.42 16 31 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.09 0.58 5.96 -51.93 -0.31 0.27 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.54 8.14 -51.94 -0.42 0.12 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.23 7.87 -51.93 -0.41 0.82 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.39 8.04 8.17 -40.82 -0.33 7.70 16 41 H 0.02 0.59 8.01 -51.93 -0.42 0.17 16 42 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 43 H 0.27 8.92 7.22 -40.82 -0.29 8.63 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -38.05 342.82 -8.91 -46.96 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.24 Total: 4.04 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.17 Total: 3.06 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.08 Total: -54.18 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.50 Total: -25.66 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -38.05 -8.91 -46.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331188243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.521 kcal (2) G-P(sol) polarization free energy of solvation -38.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds