Wall clock time and date at job start Tue Mar 31 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47450 * 2 1 4 4 C 1.50707 * 109.47298 * 120.00100 * 2 1 3 5 5 O 1.21277 * 119.99567 * 352.74246 * 4 2 1 6 6 N 1.34769 * 120.00159 * 172.74817 * 4 2 1 7 7 C 1.46928 * 120.63041 * 6.28089 * 6 4 2 8 8 C 1.53196 * 108.77659 * 233.62874 * 7 6 4 9 9 C 1.53031 * 109.31359 * 305.37025 * 8 7 6 10 10 C 1.53042 * 109.54127 * 61.36426 * 9 8 7 11 11 C 1.46923 * 120.63316 * 186.30533 * 6 4 2 12 12 H 1.08995 * 109.58870 * 246.29901 * 11 6 4 13 13 C 1.50705 * 109.58326 * 6.58477 * 11 6 4 14 14 O 1.21291 * 120.00691 * 65.17093 * 13 11 6 15 15 N 1.34782 * 119.99482 * 245.17590 * 13 11 6 16 16 C 1.46493 * 120.00006 * 5.15186 * 15 13 11 17 17 C 1.37094 * 119.99590 * 185.15007 * 15 13 11 18 18 H 1.08006 * 120.00536 * 335.12184 * 17 15 13 19 19 C 1.38949 * 119.99974 * 155.12921 * 17 15 13 20 20 N 1.31416 * 119.99887 * 354.16817 * 19 17 15 21 21 Si 1.86804 * 120.00244 * 174.17387 * 19 17 15 22 22 H 1.48497 * 109.46884 * 269.99393 * 21 19 17 23 23 H 1.48504 * 109.47136 * 29.99838 * 21 19 17 24 24 H 1.48504 * 109.47102 * 149.99264 * 21 19 17 25 25 H 1.08997 * 109.47179 * 299.99929 * 1 2 3 26 26 H 1.09001 * 109.46597 * 59.99757 * 1 2 3 27 27 H 1.08990 * 109.47122 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47179 * 240.00071 * 2 1 3 29 29 H 1.09001 * 109.46909 * 304.94326 * 3 2 1 30 30 H 1.09001 * 109.47067 * 64.93327 * 3 2 1 31 31 H 1.08993 * 109.47507 * 184.93426 * 3 2 1 32 32 H 1.08991 * 109.58896 * 353.42253 * 7 6 4 33 33 H 1.09003 * 109.58301 * 113.70388 * 7 6 4 34 34 H 1.09010 * 109.49379 * 65.31917 * 8 7 6 35 35 H 1.09000 * 109.50108 * 185.41329 * 8 7 6 36 36 H 1.09008 * 109.45916 * 181.38461 * 9 8 7 37 37 H 1.09002 * 109.46505 * 301.35213 * 9 8 7 38 38 H 1.09002 * 109.49458 * 178.68372 * 10 9 8 39 39 H 1.08994 * 109.49588 * 58.58454 * 10 9 8 40 40 H 1.09007 * 109.47148 * 265.99550 * 16 15 13 41 41 H 1.08997 * 109.47863 * 25.99736 * 16 15 13 42 42 H 1.09004 * 109.47172 * 145.99871 * 16 15 13 43 43 H 0.96998 * 119.99888 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 1.2522 -1.0550 2.0927 6 7 3.3486 -0.9627 1.3728 7 6 4.3210 -0.4329 0.4072 8 6 5.1713 -1.5918 -0.1228 9 6 5.7991 -2.3392 1.0558 10 6 4.6938 -2.9172 1.9426 11 6 3.8383 -1.7733 2.4961 12 1 4.4399 -1.1523 3.1598 13 6 2.6681 -2.3405 3.2577 14 8 1.9283 -3.1407 2.7252 15 7 2.4436 -1.9584 4.5306 16 6 3.2673 -0.9095 5.1366 17 6 1.4442 -2.5514 5.2580 18 1 0.6028 -3.0021 4.7526 19 6 1.5138 -2.5726 6.6456 20 7 2.5890 -2.1279 7.2564 21 14 0.0791 -3.2335 7.6428 22 1 -0.8590 -2.1254 7.9547 23 1 -0.6300 -4.2765 6.8588 24 1 0.5857 -3.8241 8.9077 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6062 1.9813 -0.8424 30 1 1.7507 1.9302 0.9309 31 1 3.1264 1.4438 -0.0884 32 1 3.7933 0.0413 -0.4201 33 1 4.9625 0.2987 0.8987 34 1 4.5408 -2.2747 -0.6925 35 1 5.9589 -1.2005 -0.7666 36 1 6.4244 -3.1494 0.6804 37 1 6.4095 -1.6500 1.6393 38 1 5.1418 -3.4692 2.7689 39 1 4.0680 -3.5875 1.3536 40 1 4.0962 -1.3658 5.6780 41 1 3.6585 -0.2578 4.3555 42 1 2.6602 -0.3246 5.8276 43 1 2.6377 -2.1430 8.2251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334397433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:03 Heat of formation + Delta-G solvation = -52.611165 kcal Electronic energy + Delta-G solvation = -24463.058595 eV Core-core repulsion = 21123.109994 eV Total energy + Delta-G solvation = -3339.948601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.42190 -37.82327 -36.93363 -34.61669 -34.07146 -32.44337 -31.52249 -30.66328 -27.08814 -26.44846 -25.60057 -24.30834 -23.30516 -22.61346 -20.23535 -19.54422 -18.00220 -16.98711 -16.47430 -15.83871 -15.52970 -15.11175 -14.62350 -14.31582 -14.01781 -13.92348 -13.69162 -13.56549 -13.21359 -12.83370 -12.60267 -12.18015 -12.16343 -12.04018 -11.79471 -11.49661 -11.27016 -11.17460 -11.04963 -10.94020 -10.91466 -10.82816 -10.69655 -10.55013 -10.37833 -10.20258 -10.02053 -8.91265 -8.73919 -8.22922 -7.99514 -7.37749 -6.08368 -3.64407 3.14002 3.22623 3.33698 3.36082 3.43605 4.27360 4.36170 4.63343 4.82246 4.89607 4.94605 5.02680 5.10602 5.13462 5.29591 5.40352 5.45592 5.50324 5.55152 5.63646 5.74170 5.79289 5.85046 5.93166 5.93955 5.98029 6.06172 6.07843 6.21226 6.24305 6.27006 6.46487 6.49012 6.62285 6.91253 7.08285 7.39172 7.77921 7.84439 8.40156 8.71130 8.82051 9.47225 9.70645 10.29641 10.95501 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019082 B = 0.006345 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.994082 B = 4411.859664 C = 5240.716246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.110 4.110 3 C -0.151 4.151 4 C 0.501 3.499 5 O -0.476 6.476 6 N -0.607 5.607 7 C 0.103 3.897 8 C -0.136 4.136 9 C -0.117 4.117 10 C -0.118 4.118 11 C 0.125 3.875 12 H 0.081 0.919 13 C 0.486 3.514 14 O -0.577 6.577 15 N -0.449 5.449 16 C 0.119 3.881 17 C -0.281 4.281 18 H 0.094 0.906 19 C 0.022 3.978 20 N -0.896 5.896 21 Si 0.925 3.075 22 H -0.280 1.280 23 H -0.271 1.271 24 H -0.286 1.286 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.065 0.935 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.997 7.356 -14.435 17.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.132 4.132 3 C -0.208 4.208 4 C 0.288 3.712 5 O -0.347 6.347 6 N -0.344 5.344 7 C -0.020 4.020 8 C -0.174 4.174 9 C -0.155 4.155 10 C -0.156 4.156 11 C 0.019 3.981 12 H 0.099 0.901 13 C 0.273 3.727 14 O -0.460 6.460 15 N -0.169 5.169 16 C -0.025 4.025 17 C -0.409 4.409 18 H 0.112 0.888 19 C -0.179 4.179 20 N -0.538 5.538 21 Si 0.753 3.247 22 H -0.207 1.207 23 H -0.195 1.195 24 H -0.211 1.211 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.083 0.917 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.199 6.793 -13.985 16.738 hybrid contribution -0.349 -0.154 0.658 0.761 sum 5.850 6.639 -13.327 15.997 Atomic orbital electron populations 1.21585 0.92656 1.02918 1.01676 1.21246 0.98228 0.96861 0.96842 1.22015 1.01463 0.94553 1.02810 1.20666 0.81854 0.80039 0.88648 1.90887 1.53876 1.48610 1.41286 1.48003 1.06096 1.52983 1.27311 1.21927 0.91655 0.95817 0.92606 1.21943 0.99310 0.98037 0.98124 1.21515 0.97589 0.99790 0.96564 1.21735 0.96587 0.97391 0.99925 1.21410 0.96364 0.92592 0.87771 0.90082 1.19245 0.85998 0.84225 0.83191 1.90480 1.48423 1.38961 1.68184 1.43274 1.30661 1.32507 1.10461 1.21451 0.96008 0.90037 0.94968 1.19604 1.00139 1.33140 0.88052 0.88778 1.25328 0.97672 0.97731 0.97123 1.69980 1.26767 1.47783 1.09250 0.85937 0.80939 0.79069 0.78801 1.20665 1.19549 1.21134 0.91766 0.92591 0.91958 0.89356 0.91767 0.91992 0.91532 0.89125 0.91629 0.91449 0.91077 0.91724 0.91857 0.90776 0.90636 0.92632 0.96404 0.91656 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.52 37.16 0.32 -1.52 16 2 C -0.11 -1.50 2.42 -91.77 -0.22 -1.72 16 3 C -0.15 -1.59 8.75 37.16 0.32 -1.26 16 4 C 0.50 9.57 6.77 -10.99 -0.07 9.49 16 5 O -0.48 -11.90 11.91 -18.66 -0.22 -12.12 16 6 N -0.61 -10.31 2.97 -166.53 -0.49 -10.80 16 7 C 0.10 1.18 5.27 -3.71 -0.02 1.16 16 8 C -0.14 -1.42 6.08 -26.61 -0.16 -1.58 16 9 C -0.12 -1.40 5.88 -26.69 -0.16 -1.55 16 10 C -0.12 -1.98 5.30 -26.61 -0.14 -2.12 16 11 C 0.12 2.46 2.82 -68.75 -0.19 2.27 16 12 H 0.08 1.53 5.63 -51.93 -0.29 1.24 16 13 C 0.49 12.74 3.99 -10.98 -0.04 12.69 16 14 O -0.58 -17.25 14.55 -18.67 -0.27 -17.52 16 15 N -0.45 -12.52 3.02 -122.19 -0.37 -12.89 16 16 C 0.12 2.92 8.19 59.84 0.49 3.42 16 17 C -0.28 -8.52 9.28 -14.94 -0.14 -8.66 16 18 H 0.09 3.05 7.39 -52.48 -0.39 2.66 16 19 C 0.02 0.63 5.23 -17.47 -0.09 0.54 16 20 N -0.90 -25.32 10.46 55.50 0.58 -24.74 16 21 Si 0.92 22.46 29.56 -169.99 -5.02 17.44 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 25 H 0.06 1.00 8.02 -51.93 -0.42 0.58 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.03 7.61 -51.93 -0.40 0.64 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.59 5.25 -51.93 -0.27 0.32 16 32 H 0.09 0.84 4.28 -51.93 -0.22 0.62 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16 40 H 0.06 1.38 7.41 -51.92 -0.38 0.99 16 41 H 0.02 0.37 6.06 -51.93 -0.31 0.06 16 42 H 0.06 1.70 7.20 -51.93 -0.37 1.33 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -36.21 328.74 -7.79 -44.00 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.83 Total: 0.54 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -0.11 Total: 11.14 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.28 Total: -48.43 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.49 Total: -29.65 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.21 -7.79 -44.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334397433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.611 kcal (2) G-P(sol) polarization free energy of solvation -36.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds