Wall clock time and date at job start Tue Mar 31 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47466 * 2 1 4 4 C 1.50700 * 109.47008 * 120.00170 * 2 1 3 5 5 O 1.21283 * 119.99997 * 248.83712 * 4 2 1 6 6 N 1.34778 * 120.00150 * 68.84180 * 4 2 1 7 7 C 1.46927 * 120.62979 * 2.89815 * 6 4 2 8 8 C 1.53189 * 108.77519 * 126.37123 * 7 6 4 9 9 C 1.53040 * 109.31683 * 54.63266 * 8 7 6 10 10 C 1.53072 * 109.65814 * 298.70099 * 9 8 7 11 11 C 1.46926 * 120.62905 * 182.87114 * 6 4 2 12 12 H 1.09004 * 109.58515 * 113.70562 * 11 6 4 13 13 C 1.50694 * 109.58952 * 353.42252 * 11 6 4 14 14 O 1.21305 * 119.99742 * 291.14084 * 13 11 6 15 15 N 1.34772 * 120.00566 * 111.42105 * 13 11 6 16 16 C 1.46504 * 119.99543 * 4.93761 * 15 13 11 17 17 C 1.37093 * 120.00445 * 184.94798 * 15 13 11 18 18 H 1.07997 * 119.99994 * 31.99373 * 17 15 13 19 19 C 1.38953 * 120.00303 * 212.00006 * 17 15 13 20 20 N 1.31414 * 119.99421 * 6.25825 * 19 17 15 21 21 Si 1.86798 * 120.00376 * 186.25825 * 19 17 15 22 22 H 1.48501 * 109.46825 * 89.99672 * 21 19 17 23 23 H 1.48499 * 109.46959 * 209.99991 * 21 19 17 24 24 H 1.48492 * 109.47084 * 329.99728 * 21 19 17 25 25 H 1.08999 * 109.47301 * 185.44828 * 1 2 3 26 26 H 1.09004 * 109.47175 * 305.44824 * 1 2 3 27 27 H 1.09000 * 109.47518 * 65.44393 * 1 2 3 28 28 H 1.09005 * 109.47022 * 239.99557 * 2 1 3 29 29 H 1.09005 * 109.47195 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47255 * 299.99846 * 3 2 1 31 31 H 1.08996 * 109.47431 * 60.00031 * 3 2 1 32 32 H 1.09001 * 109.58728 * 246.15534 * 7 6 4 33 33 H 1.08996 * 109.58485 * 6.57888 * 7 6 4 34 34 H 1.09001 * 109.49618 * 174.58581 * 8 7 6 35 35 H 1.08998 * 109.49699 * 294.64557 * 8 7 6 36 36 H 1.09004 * 109.45946 * 58.65395 * 9 8 7 37 37 H 1.08997 * 109.45991 * 178.62673 * 9 8 7 38 38 H 1.09003 * 109.38940 * 301.28058 * 10 9 8 39 39 H 1.08993 * 109.62298 * 181.16844 * 10 9 8 40 40 H 1.09006 * 109.46970 * 90.52566 * 16 15 13 41 41 H 1.09004 * 109.46919 * 210.51961 * 16 15 13 42 42 H 1.08996 * 109.47281 * 330.52572 * 16 15 13 43 43 H 0.97006 * 119.99813 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.5919 -0.0849 2.1059 6 7 1.8597 -2.0410 1.3580 7 6 1.2407 -2.8225 0.2787 8 6 2.1722 -3.9824 -0.0868 9 6 2.4907 -4.7920 1.1723 10 6 3.2061 -3.9005 2.1904 11 6 2.2875 -2.7377 2.5788 12 1 1.4139 -3.1224 3.1052 13 6 3.0342 -1.7804 3.4715 14 8 4.1255 -1.3676 3.1398 15 7 2.4921 -1.3873 4.6411 16 6 1.2283 -1.9723 5.0959 17 6 3.1231 -0.4399 5.4051 18 1 3.7007 0.3395 4.9305 19 6 3.0195 -0.4824 6.7901 20 7 2.4218 -1.4970 7.3734 21 14 3.7300 0.9025 7.8229 22 1 2.6962 1.9490 8.0260 23 1 4.1587 0.3678 9.1403 24 1 4.8999 1.4916 7.1234 25 1 -0.3634 -1.0230 0.0976 26 1 -0.3634 0.5960 0.8372 27 1 -0.3634 0.4271 -0.9347 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4423 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 0.2820 -3.2162 0.6161 33 1 1.0902 -2.1860 -0.5932 34 1 1.6828 -4.6253 -0.8185 35 1 3.0961 -3.5878 -0.5096 36 1 1.5639 -5.1657 1.6078 37 1 3.1337 -5.6323 0.9107 38 1 4.1218 -3.5085 1.7477 39 1 3.4511 -4.4829 3.0785 40 1 1.4338 -2.8522 5.7057 41 1 0.6811 -1.2392 5.6887 42 1 0.6297 -2.2608 4.2319 43 1 2.3491 -1.5265 8.3403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334397434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:06 Heat of formation + Delta-G solvation = -56.954597 kcal Electronic energy + Delta-G solvation = -24482.814039 eV Core-core repulsion = 21142.677092 eV Total energy + Delta-G solvation = -3340.136946 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40588 -37.79772 -36.92194 -34.55766 -34.02186 -32.45495 -31.53772 -30.66497 -27.04985 -26.40688 -25.57581 -24.32780 -23.38570 -22.59206 -20.26529 -19.47775 -17.97981 -17.02504 -16.41330 -15.81328 -15.48242 -15.11673 -14.61373 -14.32704 -14.05089 -13.89735 -13.63664 -13.60457 -13.18360 -12.83484 -12.59762 -12.19851 -12.14822 -12.07623 -11.76082 -11.46634 -11.29812 -11.15292 -11.08139 -10.97799 -10.93452 -10.82954 -10.71357 -10.56453 -10.43467 -10.17931 -10.04565 -8.86602 -8.67288 -8.24244 -7.95765 -7.27270 -6.07494 -3.67744 3.15569 3.19130 3.33834 3.36945 3.45187 4.30280 4.39277 4.65148 4.81403 4.91483 4.94737 5.01488 5.12265 5.13715 5.29795 5.37219 5.44887 5.50085 5.57404 5.65462 5.75743 5.79121 5.83840 5.92402 5.94193 5.97219 6.05403 6.08270 6.20974 6.24548 6.26272 6.45862 6.47463 6.63489 6.90701 6.99618 7.32670 7.80020 7.83410 8.47752 8.72275 8.83918 9.50551 9.70705 10.33371 10.98135 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.006550 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.777312 B = 4273.942677 C = 5155.467359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.131 4.131 4 C 0.498 3.502 5 O -0.472 6.472 6 N -0.606 5.606 7 C 0.109 3.891 8 C -0.136 4.136 9 C -0.117 4.117 10 C -0.118 4.118 11 C 0.122 3.878 12 H 0.082 0.918 13 C 0.489 3.511 14 O -0.570 6.570 15 N -0.451 5.451 16 C 0.113 3.887 17 C -0.279 4.279 18 H 0.091 0.909 19 C 0.025 3.975 20 N -0.894 5.894 21 Si 0.922 3.078 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.271 1.271 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.021 0.979 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.478 -4.714 -15.479 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.189 4.189 4 C 0.284 3.716 5 O -0.343 6.343 6 N -0.343 5.343 7 C -0.015 4.015 8 C -0.174 4.174 9 C -0.155 4.155 10 C -0.157 4.157 11 C 0.016 3.984 12 H 0.100 0.900 13 C 0.276 3.724 14 O -0.452 6.452 15 N -0.172 5.172 16 C -0.031 4.031 17 C -0.407 4.407 18 H 0.108 0.892 19 C -0.176 4.176 20 N -0.535 5.535 21 Si 0.750 3.250 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.195 1.195 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.656 -4.160 -14.932 16.870 hybrid contribution 0.077 0.374 0.635 0.741 sum -6.579 -3.786 -14.297 16.187 Atomic orbital electron populations 1.21847 0.93221 1.02586 1.02578 1.21258 0.97268 0.97903 0.96754 1.21598 1.01805 0.93686 1.01811 1.20733 0.79867 0.81942 0.89066 1.90929 1.38497 1.64227 1.40598 1.48014 1.62117 1.06844 1.17335 1.21764 0.95766 0.93513 0.90414 1.21933 1.00316 0.97137 0.98000 1.21518 1.00623 0.97825 0.95485 1.21746 0.99072 0.95446 0.99419 1.21449 0.97929 0.93419 0.85578 0.89987 1.19306 0.86510 0.83087 0.83465 1.90487 1.22311 1.58300 1.74110 1.43239 1.19086 1.36540 1.18332 1.21468 0.86186 0.99587 0.95833 1.19515 1.29009 1.04895 0.87331 0.89154 1.25406 0.97525 0.97506 0.97211 1.69933 1.44124 1.29351 1.10064 0.85980 0.79400 0.80757 0.78874 1.20695 1.21144 1.19519 0.92017 0.91908 0.91832 0.89440 0.92091 0.92572 0.91622 0.91647 0.89695 0.91047 0.91456 0.91888 0.91726 0.90595 0.90794 0.92667 0.92110 0.96090 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.81 37.16 0.33 -1.24 16 2 C -0.11 -1.49 2.40 -91.78 -0.22 -1.71 16 3 C -0.13 -1.83 8.53 37.15 0.32 -1.51 16 4 C 0.50 9.44 6.87 -10.98 -0.08 9.37 16 5 O -0.47 -11.80 11.68 -18.88 -0.22 -12.02 16 6 N -0.61 -10.22 2.97 -166.54 -0.50 -10.72 16 7 C 0.11 1.23 5.00 -3.71 -0.02 1.21 16 8 C -0.14 -1.42 6.08 -26.61 -0.16 -1.58 16 9 C -0.12 -1.39 5.88 -26.67 -0.16 -1.55 16 10 C -0.12 -1.99 5.28 -26.59 -0.14 -2.13 16 11 C 0.12 2.40 2.90 -68.75 -0.20 2.20 16 12 H 0.08 1.52 5.46 -51.93 -0.28 1.24 16 13 C 0.49 12.81 4.01 -10.99 -0.04 12.77 16 14 O -0.57 -17.18 14.59 -18.90 -0.28 -17.45 16 15 N -0.45 -12.52 2.99 -122.19 -0.37 -12.88 16 16 C 0.11 2.73 8.39 59.85 0.50 3.23 16 17 C -0.28 -8.47 9.05 -14.93 -0.14 -8.61 16 18 H 0.09 2.94 7.63 -52.49 -0.40 2.54 16 19 C 0.02 0.71 5.20 -17.47 -0.09 0.62 16 20 N -0.89 -25.51 10.97 55.50 0.61 -24.90 16 21 Si 0.92 22.56 29.56 -169.99 -5.02 17.53 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.06 0.61 6.11 -51.93 -0.32 0.29 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.98 7.08 -51.93 -0.37 0.62 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.03 8.00 -51.93 -0.42 0.62 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.79 5.02 -51.93 -0.26 0.53 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.45 7.81 -51.93 -0.41 1.04 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.05 1.36 7.47 -51.93 -0.39 0.97 16 41 H 0.06 1.54 7.47 -51.93 -0.39 1.15 16 42 H 0.02 0.43 5.84 -51.93 -0.30 0.12 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -36.54 330.11 -7.79 -44.33 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.89 Total: 0.08 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -0.10 Total: 11.06 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.25 Total: -48.50 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.50 Total: -29.47 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.54 -7.79 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334397434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.629 kcal (2) G-P(sol) polarization free energy of solvation -36.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds