Wall clock time and date at job start Tue Mar 31 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47102 * 2 1 4 4 H 1.08997 * 109.74633 * 60.88258 * 3 2 1 5 5 C 1.52928 * 109.52901 * 300.69010 * 3 2 1 6 6 N 1.46961 * 108.69101 * 190.95525 * 5 3 2 7 7 C 1.34782 * 120.59440 * 235.11883 * 6 5 3 8 8 O 1.21690 * 119.99777 * 185.51381 * 7 6 5 9 9 C 1.46371 * 119.99830 * 5.51282 * 7 6 5 10 10 H 1.08002 * 120.00213 * 5.40043 * 9 7 6 11 11 C 1.40051 * 120.00230 * 185.40088 * 9 7 6 12 12 N 1.30673 * 119.99559 * 0.02562 * 11 9 7 13 13 Si 1.86793 * 120.00142 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47501 * 59.99914 * 13 11 9 15 15 H 1.48505 * 109.47176 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47135 * 299.99735 * 13 11 9 17 17 C 1.46968 * 118.81316 * 55.09580 * 6 5 3 18 18 H 1.09007 * 109.60426 * 64.52123 * 17 6 5 19 19 C 1.53003 * 109.60884 * 185.02791 * 17 6 5 20 20 C 1.53000 * 109.46691 * 178.39794 * 19 17 6 21 21 C 1.53366 * 108.63682 * 304.77694 * 17 6 5 22 22 N 1.46961 * 108.63533 * 49.42091 * 21 17 6 23 23 C 1.34774 * 120.59629 * 124.75297 * 22 21 17 24 24 C 1.50703 * 119.99807 * 354.38221 * 23 22 21 25 25 O 1.21279 * 120.00504 * 174.65504 * 23 22 21 26 26 H 1.09005 * 109.46871 * 305.05757 * 1 2 3 27 27 H 1.09003 * 109.47207 * 65.05611 * 1 2 3 28 28 H 1.09003 * 109.47471 * 185.06023 * 1 2 3 29 29 H 1.09003 * 109.46360 * 240.00082 * 2 1 3 30 30 H 1.08997 * 109.47284 * 120.00665 * 2 1 3 31 31 H 1.09002 * 109.68664 * 71.13037 * 5 3 2 32 32 H 1.09004 * 109.61479 * 310.73542 * 5 3 2 33 33 H 0.96998 * 119.99637 * 180.02562 * 12 11 9 34 34 H 1.08996 * 109.47136 * 298.39586 * 19 17 6 35 35 H 1.08993 * 109.46877 * 58.39908 * 19 17 6 36 36 H 1.09006 * 109.46784 * 184.88419 * 20 19 17 37 37 H 1.09004 * 109.47260 * 304.88402 * 20 19 17 38 38 H 1.08996 * 109.47310 * 64.88725 * 20 19 17 39 39 H 1.09005 * 109.60794 * 289.67810 * 21 17 6 40 40 H 1.08998 * 109.61398 * 169.17009 * 21 17 6 41 41 H 1.08999 * 109.47260 * 180.27896 * 24 23 22 42 42 H 1.09003 * 109.47109 * 300.27771 * 24 23 22 43 43 H 1.09000 * 109.47325 * 60.27158 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6921 1.9560 0.8962 5 6 1.5168 2.1696 -1.2394 6 7 2.2194 3.4545 -1.3633 7 6 1.5288 4.6093 -1.4409 8 8 2.1149 5.6562 -1.6438 9 6 0.0738 4.6040 -1.2812 10 1 -0.4369 3.6904 -1.0150 11 6 -0.6561 5.7837 -1.4737 12 7 -0.0382 6.8889 -1.7964 13 14 -2.5128 5.7771 -1.2692 14 1 -2.8569 5.3642 0.1151 15 1 -3.0439 7.1398 -1.5263 16 1 -3.1137 4.8219 -2.2345 17 6 3.6886 3.4576 -1.4004 18 1 4.0330 2.9419 -2.2969 19 6 4.1990 4.9000 -1.4057 20 6 5.7290 4.8995 -1.4040 21 6 4.2120 2.7309 -0.1554 22 7 3.5094 1.4461 -0.0315 23 6 4.1999 0.2913 0.0461 24 6 5.6977 0.2964 -0.1207 25 8 3.6155 -0.7526 0.2452 26 1 -0.3633 0.5903 0.8413 27 1 -0.3634 0.4334 -0.9318 28 1 -0.3634 -1.0237 0.0906 29 1 1.8932 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 0.4462 2.3465 -1.1368 32 1 1.7042 1.5633 -2.1257 33 1 -0.5436 7.7061 -1.9293 34 1 3.8368 5.4103 -2.2981 35 1 3.8349 5.4174 -0.5182 36 1 6.0926 5.9238 -1.3202 37 1 6.0913 4.3150 -0.5582 38 1 6.0932 4.4595 -2.3323 39 1 4.0222 3.3384 0.7296 40 1 5.2826 2.5540 -0.2579 41 1 6.0766 -0.7218 -0.0319 42 1 5.9525 0.6945 -1.1029 43 1 6.1472 0.9202 0.6518 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335759526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:03 Heat of formation + Delta-G solvation = -45.135007 kcal Electronic energy + Delta-G solvation = -24206.828757 eV Core-core repulsion = 20867.204347 eV Total energy + Delta-G solvation = -3339.624410 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40284 -38.36884 -35.99401 -34.85204 -33.30501 -32.43186 -32.22302 -29.69323 -28.22760 -26.74701 -25.91383 -24.34215 -22.83932 -21.16540 -20.85383 -19.41064 -18.55623 -16.62993 -16.35033 -16.11880 -15.45963 -15.19266 -14.99755 -14.39570 -13.92112 -13.71938 -13.53059 -13.33467 -13.12031 -12.77281 -12.70705 -12.41746 -12.26402 -12.08713 -11.79211 -11.70987 -11.43618 -11.30569 -11.16748 -11.06753 -10.98502 -10.53272 -10.51797 -10.42705 -10.29116 -9.99823 -9.94084 -8.93464 -8.85119 -8.55071 -7.24390 -7.17772 -6.20908 -4.71752 2.76990 3.11208 3.16041 3.17233 3.19448 4.01936 4.36745 4.48585 4.69815 5.12992 5.20516 5.25661 5.34239 5.38203 5.44623 5.48175 5.57081 5.65882 5.66376 5.77978 5.82457 5.85647 5.91372 6.00050 6.06813 6.14991 6.23069 6.28265 6.37871 6.42443 6.51866 6.61970 6.63443 6.94029 7.01808 7.32571 7.38789 7.52119 7.66520 8.06845 8.25974 8.36638 8.95784 9.33378 10.49476 10.67941 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.006812 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.075024 B = 4109.204714 C = 5653.289992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.107 4.107 3 C 0.128 3.872 4 H 0.074 0.926 5 C 0.113 3.887 6 N -0.641 5.641 7 C 0.560 3.440 8 O -0.565 6.565 9 C -0.545 4.545 10 H 0.071 0.929 11 C 0.090 3.910 12 N -0.766 5.766 13 Si 0.904 3.096 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.267 1.267 17 C 0.144 3.856 18 H 0.050 0.950 19 C -0.103 4.103 20 C -0.163 4.163 21 C 0.094 3.906 22 N -0.604 5.604 23 C 0.509 3.491 24 C -0.176 4.176 25 O -0.548 6.548 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.269 0.731 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 -9.050 2.729 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.145 4.145 3 C 0.025 3.975 4 H 0.092 0.908 5 C -0.012 4.012 6 N -0.379 5.379 7 C 0.367 3.633 8 O -0.448 6.448 9 C -0.581 4.581 10 H 0.089 0.911 11 C -0.130 4.130 12 N -0.395 5.395 13 Si 0.728 3.272 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.192 1.192 17 C 0.038 3.962 18 H 0.068 0.932 19 C -0.141 4.141 20 C -0.221 4.221 21 C -0.030 4.030 22 N -0.337 5.337 23 C 0.298 3.702 24 C -0.235 4.235 25 O -0.428 6.428 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.187 -8.780 2.667 11.655 hybrid contribution -0.862 0.016 0.097 0.868 sum 6.325 -8.764 2.764 11.156 Atomic orbital electron populations 1.21984 0.96701 1.01212 1.02058 1.21993 0.93959 0.94036 1.04550 1.21819 0.78424 0.97547 0.99736 0.90830 1.21866 0.99204 0.85221 0.94890 1.48250 1.03292 1.06710 1.79599 1.18177 0.87914 0.80774 0.76466 1.90597 1.69437 1.30884 1.53872 1.20957 0.90515 0.96120 1.50554 0.91129 1.25681 0.99755 0.94898 0.92652 1.69980 1.36545 0.99731 1.33208 0.86490 0.83162 0.77963 0.79556 1.19220 1.20531 1.19230 1.21263 0.83247 0.96991 0.94687 0.93219 1.22010 0.91327 0.94098 1.06626 1.22116 0.98769 1.01026 1.00212 1.22444 0.96317 0.84063 1.00154 1.48212 1.07099 1.06457 1.71888 1.20723 0.90019 0.83209 0.76258 1.21983 0.92890 1.04793 1.03865 1.90713 1.70328 1.32022 1.49702 0.92787 0.92516 0.92951 0.91544 0.89423 0.87539 0.93705 0.91998 0.88146 0.90906 0.93018 0.93875 0.93679 0.91038 0.89549 0.89383 0.89574 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.42 37.16 0.35 -1.88 16 2 C -0.11 -1.66 3.86 -26.73 -0.10 -1.77 16 3 C 0.13 2.14 3.17 -67.71 -0.21 1.93 16 4 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 5 C 0.11 2.11 5.08 -3.83 -0.02 2.10 16 6 N -0.64 -13.76 2.95 -166.86 -0.49 -14.25 16 7 C 0.56 14.79 7.47 -12.99 -0.10 14.69 16 8 O -0.56 -16.36 10.54 5.20 0.05 -16.30 16 9 C -0.55 -14.49 8.84 -35.63 -0.32 -14.80 16 10 H 0.07 1.73 5.69 -52.49 -0.30 1.43 16 11 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 12 N -0.77 -21.81 11.84 55.55 0.66 -21.16 16 13 Si 0.90 19.44 29.56 -169.99 -5.02 14.41 16 14 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 17 C 0.14 2.60 3.18 -67.48 -0.21 2.38 16 18 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 19 C -0.10 -1.95 3.87 -26.73 -0.10 -2.05 16 20 C -0.16 -2.31 9.69 37.16 0.36 -1.95 16 21 C 0.09 1.39 5.10 -3.60 -0.02 1.37 16 22 N -0.60 -9.34 2.95 -165.21 -0.49 -9.82 16 23 C 0.51 7.45 7.65 -10.99 -0.08 7.37 16 24 C -0.18 -1.79 8.67 36.01 0.31 -1.48 16 25 O -0.55 -9.44 12.59 5.56 0.07 -9.37 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.78 6.97 -51.93 -0.36 0.42 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.10 7.17 -51.93 -0.37 0.73 16 30 H 0.09 1.46 6.30 -51.93 -0.33 1.13 16 31 H 0.11 2.07 4.36 -51.93 -0.23 1.84 16 32 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 33 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 34 H 0.10 2.29 6.32 -51.93 -0.33 1.97 16 35 H 0.07 1.59 7.14 -51.93 -0.37 1.22 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.51 6.43 -51.93 -0.33 0.18 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 40 H 0.09 1.00 4.74 -51.93 -0.25 0.75 16 41 H 0.09 0.83 8.12 -51.93 -0.42 0.41 16 42 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 43 H 0.08 0.72 7.69 -51.93 -0.40 0.32 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -31.30 325.51 -7.17 -38.48 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.61 Total: 4.90 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.24 Total: 8.22 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.32 Total: -45.23 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: 0.12 Total: -25.67 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.30 -7.17 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335759526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.658 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds