Wall clock time and date at job start Tue Mar 31 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46904 * 2 1 4 4 H 1.08998 * 109.61336 * 59.43317 * 3 2 1 5 5 C 1.53379 * 109.60756 * 298.92669 * 3 2 1 6 6 N 1.46965 * 108.63545 * 190.83492 * 5 3 2 7 7 C 1.34771 * 120.59248 * 235.24680 * 6 5 3 8 8 C 1.50703 * 119.99985 * 5.86216 * 7 6 5 9 9 O 1.21280 * 120.00168 * 185.85971 * 7 6 5 10 10 C 1.46968 * 118.81285 * 55.22462 * 6 5 3 11 11 H 1.08998 * 109.74915 * 64.60346 * 10 6 5 12 12 C 1.52999 * 109.60654 * 185.03217 * 10 6 5 13 13 C 1.53001 * 109.46670 * 178.80033 * 12 10 6 14 14 C 1.53373 * 108.63248 * 304.77698 * 10 6 5 15 15 N 1.46959 * 109.60864 * 179.78410 * 3 2 1 16 16 C 1.34774 * 120.59650 * 354.94598 * 15 3 2 17 17 O 1.21686 * 119.99921 * 5.61617 * 16 15 3 18 18 C 1.46376 * 119.99999 * 185.62225 * 16 15 3 19 19 H 1.07998 * 120.00403 * 354.98591 * 18 16 15 20 20 C 1.40053 * 119.99737 * 174.98145 * 18 16 15 21 21 N 1.30670 * 120.00077 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99573 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47381 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46835 * 120.00482 * 22 20 18 25 25 H 1.48496 * 109.46896 * 240.00105 * 22 20 18 26 26 H 1.09005 * 109.46952 * 65.03899 * 1 2 3 27 27 H 1.08999 * 109.46832 * 185.02777 * 1 2 3 28 28 H 1.08995 * 109.47427 * 305.03763 * 1 2 3 29 29 H 1.09001 * 109.47715 * 239.99838 * 2 1 3 30 30 H 1.09003 * 109.47041 * 119.99146 * 2 1 3 31 31 H 1.09004 * 109.60495 * 310.57682 * 5 3 2 32 32 H 1.09000 * 109.61134 * 70.91677 * 5 3 2 33 33 H 1.09001 * 109.47287 * 5.43182 * 8 7 6 34 34 H 1.08992 * 109.47314 * 125.44279 * 8 7 6 35 35 H 1.09008 * 109.46857 * 245.44240 * 8 7 6 36 36 H 1.09001 * 109.46778 * 298.79518 * 12 10 6 37 37 H 1.08999 * 109.47370 * 58.80190 * 12 10 6 38 38 H 1.09000 * 109.46674 * 184.93835 * 13 12 10 39 39 H 1.08995 * 109.47414 * 304.93997 * 13 12 10 40 40 H 1.09001 * 109.47463 * 64.93935 * 13 12 10 41 41 H 1.08996 * 109.60743 * 169.17128 * 14 10 6 42 42 H 1.09004 * 109.60454 * 289.67887 * 14 10 6 43 43 H 0.97002 * 119.99664 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6696 1.9615 0.8841 5 6 1.5526 2.1608 -1.2646 6 7 2.2581 3.4451 -1.3767 7 6 1.5698 4.5989 -1.4820 8 6 0.0683 4.5950 -1.3530 9 8 2.1586 5.6404 -1.6804 10 6 3.7278 3.4487 -1.3714 11 1 4.1006 2.9289 -2.2540 12 6 4.2377 4.8912 -1.3715 13 6 5.7673 4.8914 -1.3358 14 6 4.2151 2.7305 -0.1069 15 7 3.5095 1.4461 0.0052 16 6 4.1979 0.2924 0.1113 17 8 3.6075 -0.7716 0.1010 18 6 5.6559 0.3191 0.2391 19 1 6.1872 1.2566 0.1672 20 6 6.3618 -0.8711 0.4548 21 7 5.7190 -2.0055 0.5414 22 14 8.2225 -0.8370 0.6171 23 1 8.7057 0.5606 0.4821 24 1 8.6130 -1.3690 1.9474 25 1 8.8277 -1.6757 -0.4485 26 1 -0.3633 0.4337 -0.9317 27 1 -0.3633 -1.0237 0.0901 28 1 -0.3634 0.5900 0.8414 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.7680 1.5474 -2.1396 32 1 0.4789 2.3351 -1.1955 33 1 -0.2707 3.5948 -1.0831 34 1 -0.2318 5.3015 -0.5792 35 1 -0.3788 4.8858 -2.3037 36 1 3.8952 5.3975 -2.2740 37 1 3.8537 5.4124 -0.4945 38 1 6.1285 5.9160 -1.2473 39 1 6.1108 4.3099 -0.4803 40 1 6.1522 4.4484 -2.2543 41 1 5.2882 2.5534 -0.1773 42 1 3.9996 3.3438 0.7681 43 1 6.2080 -2.8298 0.6912 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335759529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:07 Heat of formation + Delta-G solvation = -39.075036 kcal Electronic energy + Delta-G solvation = -24195.339217 eV Core-core repulsion = 20855.977586 eV Total energy + Delta-G solvation = -3339.361630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41073 -38.36685 -35.98703 -34.85821 -33.32319 -32.43387 -32.21851 -29.70475 -28.23226 -26.74324 -25.92052 -24.33151 -22.85496 -21.14469 -20.86891 -19.40375 -18.57359 -16.67308 -16.37026 -16.12133 -15.46468 -15.19300 -14.94633 -14.47953 -13.99130 -13.73961 -13.53483 -13.35837 -13.17049 -12.79465 -12.72420 -12.41198 -12.20625 -11.99951 -11.75377 -11.65136 -11.40229 -11.32838 -11.14505 -11.05477 -11.01998 -10.53298 -10.48923 -10.42291 -10.25914 -9.98446 -9.92646 -8.94861 -8.83101 -8.54949 -7.27768 -7.13667 -6.21277 -4.71658 2.77351 3.08184 3.16176 3.18342 3.21231 4.01601 4.35770 4.48228 4.70152 5.01718 5.17554 5.23722 5.35472 5.41371 5.46352 5.51589 5.56395 5.65269 5.66974 5.77184 5.82036 5.90803 5.94084 5.97937 6.06472 6.15966 6.23210 6.28122 6.37919 6.43057 6.51671 6.61938 6.63310 6.93793 7.03865 7.32191 7.38709 7.52612 7.66500 8.06804 8.26214 8.36993 8.95900 9.33125 10.49058 10.67574 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.006735 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.146464 B = 4156.151568 C = 5692.265279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C 0.143 3.857 4 H 0.050 0.950 5 C 0.089 3.911 6 N -0.602 5.602 7 C 0.509 3.491 8 C -0.182 4.182 9 O -0.550 6.550 10 C 0.128 3.872 11 H 0.073 0.927 12 C -0.107 4.107 13 C -0.163 4.163 14 C 0.114 3.886 15 N -0.640 5.640 16 C 0.559 3.441 17 O -0.564 6.564 18 C -0.544 4.544 19 H 0.071 0.929 20 C 0.090 3.910 21 N -0.766 5.766 22 Si 0.903 3.097 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.106 0.894 42 H 0.046 0.954 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 9.111 -2.653 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.137 4.137 3 C 0.038 3.962 4 H 0.068 0.932 5 C -0.034 4.034 6 N -0.335 5.335 7 C 0.298 3.702 8 C -0.242 4.242 9 O -0.429 6.429 10 C 0.024 3.976 11 H 0.091 0.909 12 C -0.145 4.145 13 C -0.220 4.220 14 C -0.011 4.011 15 N -0.378 5.378 16 C 0.365 3.635 17 O -0.447 6.447 18 C -0.581 4.581 19 H 0.089 0.911 20 C -0.130 4.130 21 N -0.395 5.395 22 Si 0.728 3.272 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.201 1.201 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.124 0.876 42 H 0.064 0.936 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.108 8.833 -2.729 11.662 hybrid contribution 0.867 0.003 0.116 0.874 sum -6.242 8.836 -2.613 11.129 Atomic orbital electron populations 1.22120 0.98884 1.01090 1.00095 1.21985 0.91179 0.94000 1.06517 1.21305 0.83305 0.97037 0.94586 0.93178 1.22560 0.96683 0.84020 1.00171 1.48234 1.07075 1.06555 1.71638 1.20711 0.90086 0.83226 0.76146 1.22072 0.92949 1.04522 1.04617 1.90712 1.70091 1.32215 1.49895 1.21902 0.78430 0.97619 0.99616 0.90873 1.21997 0.93952 0.94011 1.04582 1.21999 0.96696 1.01312 1.02039 1.21951 0.99183 0.85322 0.94678 1.48244 1.03253 1.06791 1.79533 1.18195 0.88047 0.80979 0.76235 1.90619 1.69427 1.29499 1.55192 1.21039 0.90277 0.94117 1.52632 0.91054 1.25688 0.99708 0.94942 0.92680 1.70002 1.36399 0.98451 1.34605 0.86376 0.83284 0.79210 0.78319 1.18699 1.20154 1.20130 0.93887 0.92999 0.93748 0.90196 0.89022 0.90997 0.89084 0.89969 0.89075 0.89167 0.89373 0.91568 0.92932 0.92319 0.92937 0.87591 0.93623 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.47 37.16 0.35 -1.97 16 2 C -0.10 -1.88 3.83 -26.73 -0.10 -1.98 16 3 C 0.14 2.59 3.16 -67.48 -0.21 2.38 16 4 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 5 C 0.09 1.32 5.16 -3.59 -0.02 1.31 16 6 N -0.60 -9.34 2.95 -164.94 -0.49 -9.83 16 7 C 0.51 7.48 7.65 -10.99 -0.08 7.40 16 8 C -0.18 -1.87 10.08 36.01 0.36 -1.50 16 9 O -0.55 -9.48 12.61 5.56 0.07 -9.41 16 10 C 0.13 2.14 3.18 -67.48 -0.21 1.93 16 11 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 12 C -0.11 -1.67 3.86 -26.73 -0.10 -1.77 16 13 C -0.16 -2.25 9.70 37.16 0.36 -1.89 16 14 C 0.11 2.12 5.08 -3.59 -0.02 2.11 16 15 N -0.64 -13.74 2.95 -166.59 -0.49 -14.24 16 16 C 0.56 14.75 7.53 -12.99 -0.10 14.65 16 17 O -0.56 -16.31 10.42 5.20 0.05 -16.25 16 18 C -0.54 -14.48 8.86 -35.63 -0.32 -14.80 16 19 H 0.07 1.76 5.67 -52.49 -0.30 1.46 16 20 C 0.09 2.39 5.50 -17.37 -0.10 2.29 16 21 N -0.77 -21.80 11.84 55.55 0.66 -21.15 16 22 Si 0.90 19.45 29.56 -169.99 -5.02 14.42 16 23 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 26 H 0.04 0.52 7.00 -51.93 -0.36 0.15 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.74 6.93 -51.93 -0.36 1.38 16 30 H 0.09 2.10 6.54 -51.93 -0.34 1.76 16 31 H 0.07 1.14 8.12 -51.93 -0.42 0.71 16 32 H 0.09 1.06 4.15 -51.93 -0.22 0.84 16 33 H 0.08 0.73 5.18 -51.93 -0.27 0.47 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.09 1.47 6.29 -51.93 -0.33 1.14 16 37 H 0.07 1.10 7.19 -51.93 -0.37 0.72 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.11 2.06 4.18 -51.93 -0.22 1.84 16 42 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 43 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -31.35 323.94 -6.98 -38.34 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.46 Total: 5.10 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -0.19 Total: 8.14 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.32 Total: -45.21 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: 0.12 Total: -25.66 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.35 -6.98 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335759529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.739 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds