Wall clock time and date at job start Tue Mar 31 2020 06:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47111 * 2 1 4 4 H 1.09006 * 109.60733 * 313.85538 * 3 2 1 5 5 C 1.53377 * 109.61102 * 193.51986 * 3 2 1 6 6 N 1.46968 * 108.63415 * 190.65914 * 5 3 2 7 7 C 1.34778 * 120.59322 * 235.24534 * 6 5 3 8 8 O 1.21683 * 120.00006 * 174.73080 * 7 6 5 9 9 C 1.46374 * 119.99693 * 354.73260 * 7 6 5 10 10 H 1.07998 * 120.00459 * 5.01650 * 9 7 6 11 11 C 1.40055 * 119.99786 * 185.01616 * 9 7 6 12 12 N 1.30679 * 119.99882 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 120.00069 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47010 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46790 * 120.00151 * 13 11 9 16 16 H 1.48499 * 109.47255 * 240.00150 * 13 11 9 17 17 C 1.46960 * 118.80980 * 55.22355 * 6 5 3 18 18 H 1.09000 * 109.60637 * 184.85640 * 17 6 5 19 19 C 1.52998 * 109.61151 * 64.52020 * 17 6 5 20 20 C 1.53005 * 109.47335 * 65.33715 * 19 17 6 21 21 C 1.53371 * 108.78110 * 304.68415 * 17 6 5 22 22 N 1.46964 * 109.75340 * 74.28691 * 3 2 1 23 23 C 1.34776 * 120.59066 * 355.04420 * 22 3 2 24 24 C 1.50694 * 119.99795 * 185.68929 * 23 22 3 25 25 O 1.21279 * 120.00164 * 5.67982 * 23 22 3 26 26 H 1.09000 * 109.46730 * 186.86968 * 1 2 3 27 27 H 1.08998 * 109.46957 * 306.86972 * 1 2 3 28 28 H 1.08999 * 109.46987 * 66.87002 * 1 2 3 29 29 H 1.09002 * 109.46933 * 240.00106 * 2 1 3 30 30 H 1.08993 * 109.47417 * 119.99724 * 2 1 3 31 31 H 1.09001 * 109.60844 * 70.91182 * 5 3 2 32 32 H 1.08999 * 109.60773 * 310.39974 * 5 3 2 33 33 H 0.96996 * 119.99817 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.47163 * 185.33711 * 19 17 6 35 35 H 1.09001 * 109.47188 * 305.33691 * 19 17 6 36 36 H 1.09001 * 109.47002 * 59.99862 * 20 19 17 37 37 H 1.08997 * 109.47162 * 180.02562 * 20 19 17 38 38 H 1.09003 * 109.46991 * 300.00100 * 20 19 17 39 39 H 1.09001 * 109.61023 * 169.25187 * 21 17 6 40 40 H 1.09000 * 109.60802 * 289.77141 * 21 17 6 41 41 H 1.09006 * 109.47479 * 84.53270 * 24 23 22 42 42 H 1.09003 * 109.47495 * 204.53519 * 24 23 22 43 43 H 1.09003 * 109.47452 * 324.53472 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4912 2.0245 -0.7405 5 6 3.5360 1.4596 -0.3378 6 7 4.0595 2.8091 -0.0833 7 6 4.6998 3.4907 -1.0539 8 8 5.0441 4.6421 -0.8630 9 6 4.9810 2.8459 -2.3375 10 1 4.6051 1.8533 -2.5371 11 6 5.7375 3.5162 -3.3070 12 7 6.1927 4.7171 -3.0654 13 14 6.0969 2.6931 -4.9449 14 1 5.4739 1.3453 -4.9688 15 1 5.5364 3.5167 -6.0462 16 1 7.5656 2.5633 -5.1219 17 6 3.8718 3.4022 1.2481 18 1 4.2373 4.4291 1.2459 19 6 4.6422 2.5853 2.2874 20 6 6.1433 2.6962 2.0127 21 6 2.3764 3.3888 1.5883 22 7 1.8524 2.0357 1.3315 23 6 1.2116 1.3543 2.3018 24 6 0.9133 2.0213 3.6197 25 8 0.8748 0.2044 2.1142 26 1 -0.3633 -1.0203 0.1229 27 1 -0.3633 0.6166 0.8221 28 1 -0.3633 0.4037 -0.9451 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 3.6768 1.2045 -1.3881 32 1 4.0609 0.7393 0.2897 33 1 6.7169 5.1812 -3.7367 34 1 4.4259 2.9692 3.2844 35 1 4.3379 1.5404 2.2265 36 1 6.4476 3.7411 2.0736 37 1 6.6921 2.1138 2.7528 38 1 6.3596 2.3122 1.0157 39 1 2.2378 3.6456 2.6385 40 1 1.8520 4.1092 0.9605 41 1 -0.0148 2.5873 3.5387 42 1 0.8098 1.2629 4.3957 43 1 1.7291 2.6965 3.8781 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335759534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:14 Heat of formation + Delta-G solvation = -40.726644 kcal Electronic energy + Delta-G solvation = -24365.495609 eV Core-core repulsion = 21026.062360 eV Total energy + Delta-G solvation = -3339.433249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59073 -38.26325 -35.93190 -34.47380 -33.45992 -32.49703 -31.81398 -29.41115 -28.91882 -27.03168 -26.02150 -23.64542 -22.89082 -21.61578 -20.84215 -19.52465 -18.10280 -16.97299 -16.34260 -16.00178 -15.52314 -15.35644 -14.79607 -14.32751 -14.17646 -13.76077 -13.56837 -13.30408 -13.18770 -13.03332 -12.60634 -12.41576 -12.21949 -12.17234 -11.59028 -11.58254 -11.30657 -11.24493 -11.12106 -10.98967 -10.75504 -10.63305 -10.48964 -10.35561 -10.24555 -10.13385 -10.03712 -8.93639 -8.76864 -8.41123 -7.63773 -7.20206 -6.25745 -4.70511 2.78890 3.09181 3.17357 3.19633 3.22363 4.02950 4.39152 4.49696 4.70910 5.10000 5.12834 5.20573 5.31137 5.39370 5.40919 5.50310 5.57347 5.61077 5.75623 5.79072 5.80916 5.86207 5.99220 6.06269 6.15092 6.20375 6.24063 6.33074 6.33380 6.39879 6.49736 6.55752 6.69384 6.72400 6.84917 7.01913 7.40414 7.51810 7.67789 8.07114 8.28588 8.40235 8.97053 9.35264 10.50783 10.69333 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.006129 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.790350 B = 4567.490437 C = 5457.213908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.120 4.120 3 C 0.131 3.869 4 H 0.071 0.929 5 C 0.114 3.886 6 N -0.633 5.633 7 C 0.562 3.438 8 O -0.575 6.575 9 C -0.544 4.544 10 H 0.073 0.927 11 C 0.089 3.911 12 N -0.767 5.767 13 Si 0.904 3.096 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.131 3.869 18 H 0.103 0.897 19 C -0.125 4.125 20 C -0.142 4.142 21 C 0.096 3.904 22 N -0.597 5.597 23 C 0.501 3.499 24 C -0.179 4.179 25 O -0.536 6.536 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.030 0.970 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.268 0.732 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 -5.187 9.498 13.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C 0.027 3.973 4 H 0.089 0.911 5 C -0.011 4.011 6 N -0.371 5.371 7 C 0.368 3.632 8 O -0.458 6.458 9 C -0.580 4.580 10 H 0.091 0.909 11 C -0.131 4.131 12 N -0.395 5.395 13 Si 0.729 3.271 14 H -0.187 1.187 15 H -0.201 1.201 16 H -0.202 1.202 17 C 0.025 3.975 18 H 0.121 0.879 19 C -0.164 4.164 20 C -0.200 4.200 21 C -0.028 4.028 22 N -0.331 5.331 23 C 0.291 3.709 24 C -0.238 4.238 25 O -0.416 6.416 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.377 -4.955 9.409 12.942 hybrid contribution 0.186 -0.297 -0.844 0.913 sum -7.191 -5.252 8.566 12.356 Atomic orbital electron populations 1.21873 0.95741 1.01323 0.99555 1.22019 0.96565 0.94629 1.02597 1.21877 0.97576 0.94847 0.82987 0.91055 1.21862 0.90709 0.85928 1.02650 1.48177 1.61989 1.16324 1.10572 1.18225 0.76449 0.85264 0.83213 1.90592 1.56078 1.17855 1.81239 1.21005 1.35544 1.02899 0.98587 0.90938 1.25708 0.93938 0.94198 0.99249 1.70016 1.25538 1.10724 1.33250 0.86367 0.78600 0.80158 0.82001 1.18692 1.20143 1.20155 1.21172 0.91848 0.99615 0.84837 0.87906 1.21786 0.96443 1.00533 0.97645 1.21623 0.95075 1.01484 1.01770 1.22413 0.95787 0.83132 1.01434 1.48137 1.55630 1.17057 1.12243 1.20587 0.77845 0.86694 0.85780 1.22033 1.03490 1.02643 0.95648 1.90722 1.52895 1.17366 1.80586 0.93637 0.91924 0.95135 0.93006 0.88242 0.88016 0.93429 0.92133 0.92582 0.92414 0.92875 0.94017 0.91894 0.89423 0.91053 0.89438 0.89464 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.62 37.16 0.32 -1.55 16 2 C -0.12 -1.83 4.90 -26.73 -0.13 -1.96 16 3 C 0.13 2.12 3.03 -67.48 -0.20 1.91 16 4 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 5 C 0.11 2.08 5.32 -3.59 -0.02 2.06 16 6 N -0.63 -13.29 2.15 -166.59 -0.36 -13.64 16 7 C 0.56 15.00 7.62 -12.99 -0.10 14.90 16 8 O -0.58 -17.50 14.45 5.20 0.08 -17.42 16 9 C -0.54 -14.59 8.86 -35.63 -0.32 -14.90 16 10 H 0.07 1.79 5.67 -52.49 -0.30 1.50 16 11 C 0.09 2.39 5.50 -17.36 -0.10 2.30 16 12 N -0.77 -22.21 11.84 55.55 0.66 -21.55 16 13 Si 0.90 19.61 29.56 -169.99 -5.02 14.59 16 14 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 15 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 C 0.13 2.31 2.61 -67.49 -0.18 2.13 16 18 H 0.10 2.06 6.99 -51.93 -0.36 1.70 16 19 C -0.13 -1.93 5.27 -26.73 -0.14 -2.07 16 20 C -0.14 -2.41 9.80 37.16 0.36 -2.05 16 21 C 0.10 1.35 5.87 -3.38 -0.02 1.34 16 22 N -0.60 -8.69 2.69 -164.63 -0.44 -9.14 16 23 C 0.50 6.87 6.80 -10.99 -0.07 6.80 16 24 C -0.18 -1.72 9.57 36.00 0.34 -1.37 16 25 O -0.54 -8.57 10.44 5.56 0.06 -8.52 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.97 5.39 -51.93 -0.28 0.69 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.10 1.64 5.78 -52.77 -0.31 1.34 16 31 H 0.10 1.97 5.34 -51.93 -0.28 1.69 16 32 H 0.05 0.85 7.24 -51.93 -0.38 0.47 16 33 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 34 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 35 H 0.06 0.91 6.90 -51.93 -0.36 0.56 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 1.27 7.77 -51.93 -0.40 0.86 16 39 H 0.09 0.94 5.35 -51.93 -0.28 0.66 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.68 6.05 -51.93 -0.31 0.37 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -32.17 328.27 -6.94 -39.11 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.61 Total: 4.09 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.25 Total: 7.53 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.14 Total: -44.33 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: 0.13 Total: -25.94 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.17 -6.94 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335759534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.617 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds