Wall clock time and date at job start Tue Mar 31 2020 06:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47214 * 2 1 4 4 N 1.46907 * 109.47356 * 180.68103 * 3 2 1 5 5 C 1.46900 * 111.00022 * 288.07963 * 4 3 2 6 6 C 1.53010 * 109.46737 * 294.79790 * 5 4 3 7 7 C 1.53006 * 109.46499 * 181.46840 * 6 5 4 8 8 C 1.50704 * 109.46766 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99619 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99857 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00250 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99652 * 180.02562 * 10 8 7 13 13 H 1.48491 * 109.47491 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47444 * 120.00115 * 12 10 8 15 15 H 1.48503 * 109.47116 * 239.99646 * 12 10 8 16 16 C 1.46899 * 110.99913 * 164.12440 * 4 3 2 17 17 H 1.09001 * 110.66703 * 66.88737 * 16 4 3 18 18 C 1.54234 * 110.60648 * 303.95399 * 16 4 3 19 19 C 1.51310 * 103.55286 * 241.48612 * 18 16 4 20 20 O 1.21232 * 125.39513 * 179.97438 * 19 18 16 21 21 N 1.33873 * 109.21252 * 359.97438 * 19 18 16 22 22 C 1.46500 * 122.76522 * 179.97438 * 21 19 18 23 23 C 1.33881 * 114.47352 * 0.02562 * 21 19 18 24 24 O 1.21222 * 125.39727 * 180.02562 * 23 21 19 25 25 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47014 * 299.99976 * 1 2 3 27 27 H 1.08999 * 109.46886 * 60.00122 * 1 2 3 28 28 H 1.09001 * 109.47468 * 240.00163 * 2 1 3 29 29 H 1.09000 * 109.47411 * 119.99868 * 2 1 3 30 30 H 1.09006 * 109.47351 * 60.67918 * 3 2 1 31 31 H 1.08998 * 109.47273 * 300.68367 * 3 2 1 32 32 H 1.09000 * 109.47314 * 54.79373 * 5 4 3 33 33 H 1.08994 * 109.47091 * 174.79889 * 5 4 3 34 34 H 1.08998 * 109.46778 * 301.46411 * 6 5 4 35 35 H 1.08998 * 109.47160 * 61.47256 * 6 5 4 36 36 H 1.08998 * 109.47255 * 299.99279 * 7 6 5 37 37 H 1.08998 * 109.47075 * 60.00364 * 7 6 5 38 38 H 0.97001 * 119.99926 * 179.97438 * 11 10 8 39 39 H 1.09001 * 110.60125 * 0.02562 * 18 16 4 40 40 H 1.08999 * 110.60345 * 122.96788 * 18 16 4 41 41 H 1.08996 * 109.47098 * 359.97438 * 22 21 19 42 42 H 1.08996 * 109.47049 * 119.97933 * 22 21 19 43 43 H 1.09006 * 109.46725 * 239.97781 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4425 -0.0165 5 6 4.0500 1.0118 1.2796 6 6 3.6798 2.0374 2.3530 7 6 4.2744 1.6075 3.6956 8 6 3.9104 2.6180 4.7528 9 1 3.3149 3.4807 4.4928 10 6 4.3384 2.4416 6.0515 11 7 5.0639 1.3913 6.3679 12 14 3.8865 3.6938 7.3619 13 1 3.0700 4.7745 6.7534 14 1 3.1058 3.0275 8.4351 15 1 5.1251 4.2751 7.9391 16 6 4.0311 2.7631 -0.3923 17 1 3.8038 3.5001 0.3780 18 6 3.4576 3.2063 -1.7537 19 6 4.6849 3.3421 -2.6282 20 8 4.6831 3.6754 -3.7938 21 7 5.7730 3.0359 -1.9110 22 6 7.1266 3.0693 -2.4704 23 6 5.5222 2.6955 -0.6407 24 8 6.3575 2.3834 0.1806 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6867 1.9528 0.8960 31 1 1.6667 1.9598 -0.8838 32 1 3.6301 0.0413 1.5442 33 1 5.1349 0.9320 1.2120 34 1 4.0776 3.0135 2.0753 35 1 2.5949 2.0981 2.4388 36 1 3.8766 0.6314 3.9733 37 1 5.3593 1.5468 3.6098 38 1 5.3653 1.2674 7.2815 39 1 2.7845 2.4470 -2.1518 40 1 2.9450 4.1637 -1.6606 41 1 7.0800 3.3717 -3.5165 42 1 7.7328 3.7829 -1.9124 43 1 7.5740 2.0779 -2.3984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338331964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:34 Heat of formation + Delta-G solvation = -67.287796 kcal Electronic energy + Delta-G solvation = -23076.995764 eV Core-core repulsion = 19736.410737 eV Total energy + Delta-G solvation = -3340.585027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02995 -38.89119 -37.98696 -35.86374 -33.92836 -33.60859 -32.20527 -30.40777 -27.41072 -26.70721 -26.25917 -24.48250 -22.94225 -21.99614 -21.19013 -19.67688 -19.22465 -17.45503 -17.31384 -16.41511 -16.26246 -15.69360 -15.34332 -14.69147 -14.63795 -14.40290 -14.24147 -14.12361 -13.66526 -13.50846 -13.08702 -12.73566 -12.61337 -12.36721 -12.29849 -11.98620 -11.80050 -11.64290 -11.20076 -11.08316 -10.90676 -10.82958 -10.59525 -10.51825 -10.46239 -9.96774 -9.86752 -9.58916 -9.43293 -9.16883 -8.33718 -8.12522 -5.98442 -4.00972 1.42753 2.39737 2.61243 3.30532 3.38048 3.41364 3.75860 4.00210 4.15560 4.38218 4.46275 4.89311 4.95469 5.00923 5.11441 5.16635 5.28301 5.32349 5.37132 5.37774 5.42539 5.47444 5.50501 5.66950 5.75902 5.80023 5.95165 6.05681 6.17179 6.27484 6.30693 6.54026 6.67646 6.74709 6.97417 7.07892 7.21130 7.24790 7.68257 7.72505 7.84577 8.01479 8.43538 9.06010 9.62885 11.12714 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.004706 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.187044 B = 5948.108566 C = 7133.604542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.042 3.958 4 N -0.521 5.521 5 C 0.039 3.961 6 C -0.140 4.140 7 C 0.026 3.974 8 C -0.519 4.519 9 H 0.052 0.948 10 C 0.057 3.943 11 N -0.894 5.894 12 Si 0.889 3.111 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.042 3.958 17 H 0.106 0.894 18 C -0.157 4.157 19 C 0.536 3.464 20 O -0.493 6.493 21 N -0.575 5.575 22 C 0.067 3.933 23 C 0.537 3.463 24 O -0.455 6.455 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.015 0.985 37 H 0.018 0.982 38 H 0.259 0.741 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 1.190 -18.250 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.085 4.085 4 N -0.246 5.246 5 C -0.087 4.087 6 C -0.179 4.179 7 C -0.011 4.011 8 C -0.557 4.557 9 H 0.071 0.929 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.717 3.283 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.069 4.069 17 H 0.123 0.877 18 C -0.196 4.196 19 C 0.325 3.675 20 O -0.366 6.366 21 N -0.319 5.319 22 C -0.074 4.074 23 C 0.324 3.676 24 O -0.323 6.323 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.033 0.967 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.148 0.852 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.726 0.772 -18.641 19.025 hybrid contribution -0.303 1.238 1.509 1.975 sum -4.029 2.010 -17.132 17.714 Atomic orbital electron populations 1.21729 0.95719 1.01666 1.01701 1.21480 0.95133 0.96144 1.02891 1.22352 0.86526 0.98038 1.01579 1.62468 1.07969 1.21507 1.32649 1.22603 1.01526 0.99219 0.85354 1.22163 0.99964 0.97818 0.97966 1.18987 0.96271 0.96488 0.89369 1.21265 1.32809 1.08102 0.93558 0.92927 1.25014 0.95209 0.95511 0.98669 1.69975 1.36482 1.27926 1.18937 0.86582 0.78210 0.81578 0.81893 1.19844 1.21015 1.21020 1.22401 0.91516 0.95317 0.97706 0.87692 1.22728 0.97222 1.05855 0.93839 1.20736 0.85925 0.74005 0.86805 1.90751 1.86501 1.44302 1.15025 1.46613 1.09990 1.61695 1.13638 1.21917 0.81101 1.03822 1.00528 1.20627 0.91753 0.74677 0.80530 1.90813 1.52797 1.41603 1.47074 0.92666 0.92571 0.92965 0.91523 0.91369 0.92888 0.90870 0.90309 0.89376 0.93483 0.93258 0.96669 0.96313 0.93081 0.85189 0.86129 0.89051 0.90510 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.27 5.97 -26.73 -0.16 -1.43 16 3 C 0.04 0.47 4.59 -3.82 -0.02 0.45 16 4 N -0.52 -6.88 4.51 -226.89 -1.02 -7.91 16 5 C 0.04 0.66 4.96 -3.82 -0.02 0.65 16 6 C -0.14 -2.79 4.52 -26.72 -0.12 -2.91 16 7 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 8 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 9 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 12 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 C 0.04 0.52 2.42 -67.92 -0.16 0.36 16 17 H 0.11 1.34 6.18 -51.93 -0.32 1.02 16 18 C -0.16 -1.43 5.96 -26.94 -0.16 -1.59 16 19 C 0.54 6.16 8.08 -11.09 -0.09 6.07 16 20 O -0.49 -6.76 17.23 5.60 0.10 -6.67 16 21 N -0.58 -6.92 2.95 -122.73 -0.36 -7.28 16 22 C 0.07 0.66 10.65 59.85 0.64 1.30 16 23 C 0.54 7.64 7.44 -11.08 -0.08 7.56 16 24 O -0.46 -8.17 15.63 5.61 0.09 -8.08 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.84 6.70 -51.93 -0.35 0.50 16 30 H 0.05 0.66 6.01 -51.93 -0.31 0.35 16 31 H 0.07 0.64 5.78 -51.93 -0.30 0.34 16 32 H 0.08 1.31 6.54 -51.93 -0.34 0.97 16 33 H 0.09 1.67 6.03 -51.93 -0.31 1.36 16 34 H 0.05 0.94 6.25 -51.93 -0.32 0.61 16 35 H 0.05 0.94 6.37 -51.93 -0.33 0.61 16 36 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.13 1.05 6.33 -51.93 -0.33 0.72 16 40 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.80 7.41 -51.93 -0.38 0.42 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 341.42 15.07 5.15 5.15 Total: -1.00 -33.15 341.42 -7.35 -40.50 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.65 Total: -2.55 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -0.36 Total: -3.50 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -0.65 Total: -41.58 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.18 Total: -14.75 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.15 -7.35 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338331964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.785 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds