Wall clock time and date at job start Tue Mar 31 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 N 1.46901 * 109.47151 * 174.77293 * 3 2 1 5 5 C 1.46903 * 111.00098 * 75.97024 * 4 3 2 6 6 C 1.52998 * 109.46852 * 68.57960 * 5 4 3 7 7 C 1.53004 * 109.46902 * 176.29868 * 6 5 4 8 8 C 1.50709 * 109.46769 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00232 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99555 * 180.28041 * 8 7 6 11 11 N 1.31515 * 119.99962 * 359.71915 * 10 8 7 12 12 Si 1.86795 * 119.99778 * 179.72744 * 10 8 7 13 13 H 1.48493 * 109.47626 * 89.99414 * 12 10 8 14 14 H 1.48500 * 109.47070 * 209.99960 * 12 10 8 15 15 H 1.48500 * 109.47175 * 329.99241 * 12 10 8 16 16 C 1.46902 * 111.00302 * 199.92618 * 4 3 2 17 17 H 1.08998 * 110.53936 * 297.43803 * 16 4 3 18 18 C 1.54234 * 110.60367 * 60.45766 * 16 4 3 19 19 C 1.51312 * 103.55330 * 118.51982 * 18 16 4 20 20 O 1.21232 * 125.39404 * 179.97438 * 19 18 16 21 21 N 1.33869 * 109.21201 * 359.97438 * 19 18 16 22 22 C 1.46497 * 122.76456 * 179.97438 * 21 19 18 23 23 C 1.33880 * 114.47194 * 0.02562 * 21 19 18 24 24 O 1.21229 * 125.39542 * 180.02562 * 23 21 19 25 25 H 1.08998 * 109.47670 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46895 * 300.00284 * 1 2 3 27 27 H 1.08997 * 109.47293 * 59.99385 * 1 2 3 28 28 H 1.08998 * 109.46992 * 239.99909 * 2 1 3 29 29 H 1.08997 * 109.47293 * 120.00615 * 2 1 3 30 30 H 1.09002 * 109.47288 * 54.77580 * 3 2 1 31 31 H 1.09001 * 109.47474 * 294.76857 * 3 2 1 32 32 H 1.08998 * 109.47122 * 308.58138 * 5 4 3 33 33 H 1.09003 * 109.47103 * 188.57683 * 5 4 3 34 34 H 1.09005 * 109.47048 * 56.30206 * 6 5 4 35 35 H 1.09003 * 109.47369 * 296.30200 * 6 5 4 36 36 H 1.08996 * 109.46721 * 60.00382 * 7 6 5 37 37 H 1.08993 * 109.47143 * 299.99801 * 7 6 5 38 38 H 0.97006 * 119.99770 * 180.02562 * 11 10 8 39 39 H 1.09004 * 110.60062 * 237.03521 * 18 16 4 40 40 H 1.09002 * 110.60482 * 359.97438 * 18 16 4 41 41 H 1.09004 * 109.47440 * 270.00226 * 22 21 19 42 42 H 1.08998 * 109.46831 * 30.00249 * 22 21 19 43 43 H 1.09005 * 109.47154 * 150.00125 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5036 1.4443 0.1262 5 6 4.1419 1.0723 -1.1435 6 6 3.9189 2.1835 -2.1713 7 6 4.6610 1.8389 -3.4641 8 6 4.4418 2.9338 -4.4762 9 1 3.8343 3.7900 -4.2226 10 6 5.0125 2.8399 -5.7279 11 7 5.7527 1.7975 -6.0365 12 14 4.7346 4.1933 -6.9850 13 1 5.7981 5.2207 -6.8497 14 1 4.7759 3.6150 -8.3521 15 1 3.4085 4.8200 -6.7526 16 6 3.9897 2.7479 0.5977 17 1 3.7476 3.5296 -0.1223 18 6 3.3981 3.0791 1.9830 19 6 4.6171 3.1840 2.8733 20 8 4.6009 3.4348 4.0593 21 7 5.7162 2.9558 2.1440 22 6 7.0657 2.9848 2.7134 23 6 5.4807 2.7001 0.8511 24 8 6.3277 2.4664 0.0159 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6023 1.9826 0.8395 31 1 1.7552 1.9286 -0.9331 32 1 3.7050 0.1440 -1.5115 33 1 5.2114 0.9330 -0.9854 34 1 4.2973 3.1260 -1.7753 35 1 2.8529 2.2783 -2.3784 36 1 4.2826 0.8965 -3.8600 37 1 5.7269 1.7442 -3.2570 38 1 6.1545 1.7317 -6.9170 39 1 2.8614 4.0274 1.9541 40 1 2.7427 2.2768 2.3220 41 1 7.4682 3.9954 2.6429 42 1 7.0251 2.6820 3.7596 43 1 7.7079 2.2987 2.1611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338331966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:38 Heat of formation + Delta-G solvation = -68.023349 kcal Electronic energy + Delta-G solvation = -23115.790808 eV Core-core repulsion = 19775.173885 eV Total energy + Delta-G solvation = -3340.616923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01580 -38.88851 -37.92090 -35.84784 -33.95755 -33.57764 -32.19636 -30.40664 -27.37598 -26.70107 -26.23557 -24.46615 -22.93398 -21.97277 -21.18363 -19.69794 -19.21802 -17.42889 -17.27634 -16.40104 -16.23123 -15.66390 -15.35461 -14.67866 -14.60461 -14.38340 -14.19561 -14.11821 -13.67561 -13.51520 -13.07765 -12.71461 -12.59910 -12.37370 -12.29717 -11.95174 -11.80230 -11.65926 -11.18214 -11.09151 -10.89540 -10.81042 -10.59508 -10.50776 -10.49342 -9.95621 -9.84120 -9.58252 -9.41054 -9.16605 -8.32025 -8.13153 -5.97061 -3.99439 1.44911 2.42158 2.62915 3.32293 3.38442 3.40956 3.77371 4.00942 4.17190 4.40412 4.47289 4.91352 4.94115 5.03767 5.11304 5.17714 5.28466 5.34306 5.35535 5.38503 5.44424 5.48205 5.52120 5.66177 5.75282 5.79330 5.95876 6.03340 6.16361 6.26640 6.30604 6.54708 6.69965 6.74798 6.98102 7.08546 7.23146 7.26353 7.69500 7.75006 7.87097 8.03220 8.45122 9.07284 9.64100 11.14098 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.004848 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.259860 B = 5774.477835 C = 7059.272652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.044 3.956 4 N -0.521 5.521 5 C 0.041 3.959 6 C -0.139 4.139 7 C 0.028 3.972 8 C -0.519 4.519 9 H 0.052 0.948 10 C 0.057 3.943 11 N -0.894 5.894 12 Si 0.890 3.110 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.043 3.957 17 H 0.105 0.895 18 C -0.155 4.155 19 C 0.535 3.465 20 O -0.493 6.493 21 N -0.575 5.575 22 C 0.068 3.932 23 C 0.535 3.465 24 O -0.452 6.452 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.014 0.986 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -0.085 17.715 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.084 4.084 4 N -0.246 5.246 5 C -0.086 4.086 6 C -0.177 4.177 7 C -0.010 4.010 8 C -0.557 4.557 9 H 0.070 0.930 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.718 3.282 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.069 4.069 17 H 0.122 0.878 18 C -0.194 4.194 19 C 0.325 3.675 20 O -0.365 6.365 21 N -0.319 5.319 22 C -0.073 4.073 23 C 0.322 3.678 24 O -0.319 6.319 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.138 0.862 40 H 0.147 0.853 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.559 -0.517 18.102 18.944 hybrid contribution -0.160 1.363 -1.453 1.999 sum -5.719 0.847 16.649 17.624 Atomic orbital electron populations 1.21732 0.95756 1.01638 1.01689 1.21471 0.95056 0.96194 1.02850 1.22318 0.86653 0.97923 1.01459 1.62495 1.06524 1.23826 1.31792 1.22590 1.00574 0.99164 0.86230 1.22149 1.00150 0.97289 0.98160 1.18973 0.95559 0.96598 0.89883 1.21230 1.30854 1.05867 0.97790 0.93018 1.25011 0.95289 0.95686 0.98403 1.69968 1.33295 1.28835 1.21251 0.86637 0.78503 0.82212 0.80894 1.20705 1.21213 1.19979 1.22397 0.91583 0.95821 0.97065 0.87766 1.22682 0.97212 1.06296 0.93257 1.20727 0.85805 0.73706 0.87275 1.90752 1.86660 1.45191 1.13943 1.46611 1.09772 1.63754 1.11793 1.21910 0.81459 1.03672 1.00266 1.20622 0.91867 0.74496 0.80850 1.90842 1.51866 1.42123 1.47062 0.92682 0.92935 0.92637 0.91560 0.91423 0.90976 0.92906 0.90477 0.89472 0.93378 0.93483 0.96756 0.96235 0.93048 0.86224 0.85276 0.91062 0.89658 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.24 5.97 -26.73 -0.16 -1.39 16 3 C 0.04 0.49 4.61 -3.83 -0.02 0.47 16 4 N -0.52 -6.87 4.47 -226.90 -1.01 -7.89 16 5 C 0.04 0.69 4.80 -3.82 -0.02 0.67 16 6 C -0.14 -2.78 4.51 -26.73 -0.12 -2.90 16 7 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 8 C -0.52 -14.83 9.11 -34.43 -0.31 -15.14 16 9 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 12 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 C 0.04 0.53 2.21 -67.92 -0.15 0.38 16 17 H 0.10 1.33 6.30 -51.93 -0.33 1.00 16 18 C -0.15 -1.42 5.89 -26.94 -0.16 -1.58 16 19 C 0.54 6.25 8.07 -11.09 -0.09 6.16 16 20 O -0.49 -6.86 17.48 5.60 0.10 -6.76 16 21 N -0.58 -7.03 2.95 -122.73 -0.36 -7.40 16 22 C 0.07 0.69 10.58 59.85 0.63 1.32 16 23 C 0.53 7.71 7.36 -11.09 -0.08 7.63 16 24 O -0.45 -8.24 15.31 5.60 0.09 -8.16 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.79 6.99 -51.93 -0.36 0.43 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.63 6.09 -51.93 -0.32 0.31 16 31 H 0.05 0.66 6.15 -51.93 -0.32 0.34 16 32 H 0.08 1.28 6.76 -51.93 -0.35 0.93 16 33 H 0.09 1.66 6.08 -51.93 -0.32 1.34 16 34 H 0.05 0.97 6.16 -51.93 -0.32 0.65 16 35 H 0.05 0.91 6.53 -51.93 -0.34 0.57 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.13 1.05 6.73 -51.93 -0.35 0.70 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.77 7.83 -51.93 -0.41 0.36 16 43 H 0.09 0.89 7.83 -51.93 -0.41 0.49 16 LS Contribution 342.44 15.07 5.16 5.16 Total: -1.00 -33.32 342.44 -7.40 -40.72 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -6.74 Total: -2.78 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.34 Total: -3.21 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: -0.64 Total: -41.80 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.18 Total: -14.92 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.32 -7.40 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338331966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.302 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds